TCONS_00070489 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070489
Unique NameTCONS_00070489
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3439

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070489 ID=TCONS_00070489|Name=TCONS_00070489|organism=Clytia hemisphaerica|type=transcript|length=3439bp
gaaaatttcaacttttataaagaatttcttttatcaaaaattcaactgta
atactttttataaaaaattccacgaataAAATAATACTATAAcatattca
aaaaacatttagaGACATCTAAAAATAAATAGTTATCTAAACATTAATTT
AAAATTGAGCCTAAAATATAATAGATCGTAAACTAATCGATCCCTAATAC
ATGCTAAACAACCAAACCATTTATGTAAAATTCTTAATCTACGCACTTAA
ACTTACTAAAGGGTAGtcgtcaaaaactttcaagtttGTGAATCGAGAAA
GCGAGATGGCTGTAAAAAAAACCCTCACAAATAGCAAAAGTGCATGAGGT
AAATATGTAgaaaatggcttaaaaattatttccgtTATAAGTTACACGGT
GTGGCATTAGAATCTCGCTTTTTCTTACTTGAGAAAAGGTCACTAGCAAC
TTGAGTTTTTACTTTATTGGTAGTAGAGGTATAAAACAGAGTGGTTGCAA
GGAATAAGGTAGGCCACATTCTTCAATTCATTACGAGATACAAAAACACT
TTAGTAGGGGGTCAAACATCTTATGAAAAGATCATCAAAGGTGTTCAAAA
ATCAGCAAATGACCAGGCTGGTAAATTTCCCTAtattacaaaataaaatt
cGTTCTCTCTAAAAATCCCACTCACAAAGCACTTTTGTGTTACCAAAAAC
ATAATCGAATGATTGtctgtaaagtttttatttctcattttccaTCGAAT
TTCGAATTTAACCTCTCTGTCGTTCAATTATATCTTTCTTCTGACGTGCA
GCACATCCACTTGGGCAAATATTACCCTGGCAAGGCTGTGGACACATTGG
AGGATAAATGTTCGTTGTTTGAGGGCAGCCACCTGGACAAGATGGCGGCA
TGCAAGGCTGTGGACACATGTTAACGGTCGATTGTACTACGGTGCACCCC
TGTGGACAGATGTGAGGCGGGCAAGGCGTTGGACAGCTGGATGGCGTCAT
TGCAGTTGTGGTAGGACAGTATGCTGGACAACTTGGTGGTTGACATGGCT
GTGGACATGATGGGATAAGACAGTTTGCAGGGCAAAATGGCGGGATACAA
GGAGACGGACAGGCCGGTGCTTGAGGTGCTGGCATCTGCTGTTGAAGTTT
ACTTGGAGAAAAATAAAACCTTGGAGATTCTTGACAGCCAGATGGACAGC
CTGGTGGTTGACAAGGTTGTGGACACATTGTTGGAGCGGAAGCCATGGTT
TGCGGGCAACCCATAGGGCACCCTGGAGCTTGGCAGGGTTGTGGGCACAT
CTGTGGAGCAGCCATCATGGGAGGTTGCATCATCATAGCGGCACCTTGTG
CACATCCTGAGGGGCACGATGGTGGCATGCATGGTCTTGGACACATCGAT
GGAGCTGAAGCCATGGTCTGTGGGCATCCCATTGGACAGGAGGGTGCTTG
ACAAGGTTGTGGACACATTGTTGGAGCGGAAGCCATGGTTTGCGGGCAAC
CCATAGGGCACCCTGGAGCTTGGCAGGGTTGCGGGCACATCTGTGGAGCA
GCCATCATGGGAGGTTGCATCATCATAGCGGCACCTTGTGCACATCCTGA
GGGGCACGATGGTGGCGTGCATGGTCTTGGACACATCGATGGAGCTGAAG
CCATGGTCTGTGGGCATCCCATTGGACAGGAGGGTGCTTGACAAGGTTGT
GGGCACATCTGTGGAGCAGCCATCATTGGAGCGGCTTGCATACAGCCAGT
TGGACAAGATGGAGGCATACAGGGCTGTGGACACATCGAAGGCATAGAAG
CCATGGTCATGGGGCAACCCATTGGGCAACCTGGAGCTTGACAAGGTTGT
GGACACATCATCGGTTGAGGTGGTGACATTTGCTGAAGGAGCTTCTCTGG
CGAGAAATAAAATCGTGGCGACTCTTGACATCCAGAAGGACAGCCTGGTT
GTTGACAGGGCTGTGGACACATTGATGGTGCGGAAGCCATGGTTTGTGGG
CAACCCATTGGACAGGAGGGTGCTTGACAAGGTTGTGGGCACATCTGTGG
AGCAGCCATCATGGGAGGAGGCATCATCATAGCGGCACCTTGTGCACATC
CTGAGGGGCACGATGGTGGCATGCATGGTCTTGGACACATTGATGGTGCG
GAAGCCATGGTTTGTGGGCATCCCATTGGACAGGAGGGTGCTTGACAAGG
TTGAGGACACATTTGAGGAGCACCCATCATCGGTGCAGCTTGCAAACAGC
CATTTGGACAAGATGGAGGCATACAGGGCTGTGGGCACATTGAAGGCATG
GAAGCCATGGTCATGGGGCAACCCATCGGGCAACCTGGAGCTTGACAAGG
TTGTGGACACGTCTGCATCATTTTTTGAGGTGAAAAGTAAAGTCTTGGTG
TTTGTTGACACCCGATAGGACAAGAAGGTGGTTGGCAGGGTTGTGGACAC
ATAGATGGAGCAGCCATTGAAGTTGCTGGACATCCCATTGGACAAGCTGG
TGGTTGACAGGGTTGTGGACACATTGGTGGTGGAGCCATCATTTGAGTTT
GCATGCACCCAGAAGGACAAGCAGGTGGTTGACATGGTTGTGGGCACATT
GAAGGAGCTGAAGCCATTGTCTGTGGACATCCCATAGGGCAAGAGGCTCC
CTGGCATGGTTGAGGACATTGTTTTTGACATTGAGCTGGGCATGAGCTTG
GAGGACATGGTGTTGGGCAAGCCATAATGTTCACTGTCTGTTGTGTGGCG
ATGCATCCTGGTGGACATGGGTGAGGGCAAGGGTTGGGGCAGCCACCAAG
AGGAGGGGCAGATGCAGCTGAGGGTGGAGGATTAGCTGATGGTCCGTATA
CTGGAATGTCTAAAGTGATGGGGCATCCGGTTGGACAGTTGCTGGATGGA
CAGGGTCTTGGACACATGGCTGGTAAAGCAGACATGGTGAAGGGGCAACC
ACTTGGGCAGGCTGGAGGTTGGCAGGGCTGTGGGCACATTTGTTGTGGTC
GGGCAGCTCCCAAGCAAGAGGATGGGCATGATGGTGGTAGACATGGGTTA
GAGCAGATTGGTGTTGGTGGGATCACAGTGATACCAGTTGTTTGTGGGCA
ACCCATGGGACAACCAGAAGGTGGACACATTGATGGACAGAAAGGAGGTT
GCATAGGCATTGGCATGGGAGCCATCATCTGACTTTGTTGACATGGATAT
GGACATGGAGAGGGGCATTGGAAGGGACATGGTGGTTGACCCATAACTGG
ATCCCAGCTTTGTGCCAACATGTTGTAAATGAAAGGATCAACACCTTTTG
GAGGTTGCTGCTGTTGTCCTGATTGTTGTGAAGCAGGACGTTGGTAGGAG
TTCGATGATGAGGCTGAGGTAAGTGGGGAGCTTCTGGACATGGAGCCTAA
GCGATTCCGTTTTTCAGCGGTAGTGTTGGCATTGTCACC
Run BLAST on NCBI

transcript from alignment at scaffold_56:858684..863222+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070489 ID=TCONS_00070489|Name=TCONS_00070489|organism=Clytia hemisphaerica|type=transcript|length=4539bp|location=Sequence derived from alignment at scaffold_56:858684..863222+ (Clytia hemisphaerica)
gaaaatttcaacttttataaagaatttcttttatcaaaaattcaactgta
atactttttataaaaaattccacgaataAAATAATACTATAAcatattca
aaaaacatttagaGACATCTAAAAATAAATAGTTATCTAAACATTAATTT
AAAATTGAGCCTAAAATATAATAGATCGTAAACTAATCGATCCCTAATAC
ATGCTAAACAACCAAACCATTTATGTAAAATTCTTAATCTACGCACTTAA
ACTTACTAAAGGGTAGtcgtcaaaaactttcaagtttGTGAATCGAGAAA
GCGAGATGGCTGTAAAAAAAACCCTCACAAATAGCAAAAGTGCATGAGGT
AAATATGTAgaaaatggcttaaaaattatttccgtTATAAGTTACACGGT
GTGGCATTAGAATCTCGCTTTTTCTTACTTGAGAAAAGGTCACTAGCAAC
TTGAGTTTTTACTTTATTGGTAGTAGAGGTATAAAACAGAGTGGTTGCAA
GGAATAAGGTAGGCCACATTCTTCAATTCATTACGAGATACAAAAACACT
TTAGTAGGGGGTCAAACATCTTATGAAAAGATCATCAAAGGTGTTCAAAA
ATCAGCAAATGACCAGGCTGGTAAATTTCCCTAtattacaaaataaaatt
cGTTCTCTCTAAAAATCCCACTCACAAAGCACTTTTGTGTTACCAAAAAC
ATAATCGAATGATTGtctgtaaagtttttatttctcattttccaTCGAAT
TTCGAATTTAACCTCTCTGTCGTTCAATTATATCTTTCTTCTGACGTGCA
GCACATCCACTTGGGCAAATATTACCCTGGCAAGGCTGTGGACACATTGG
AGGATAAATGTTCGTTGTTTGAGGGCAGCCACCTGGACAAGATGGCGGCA
TGCAAGGCTGTGGACACATGTTAACGGTCGATTGTACTACGGTGCACCCC
TGTGGACAGATGTGAGGCGGGCAAGGCGTTGGACAGCTGGATGGCGTCAT
TGCAGTTGTGGTAGGACAGTATGCTGGACAACTTGGTGGTTGACATGGCT
GTGGACATGATGGGATAAGACAGTTTGCAGGGCAAAATGGCGGGATACAA
GGAGACGGACAGGCCGGTGCTTGAGGTGCTGGCATCTGCTGTTGAAGTTT
ACTTGGAGAAAAATAAAACCTTGGAGATTCTTGACAGCCAGATGGACAGC
CTGGTGGTTGACAAGGTTGTGGACACATTGTTGGAGCGGAAGCCATGGTT
TGCGGGCAACCCATAGGGCACCCTGGAGCTTGGCAGGGTTGTGGGCACAT
CTGTGGAGCAGCCATCATGGGAGGTTGCATCATCATAGCGGCACCTTGTG
CACATCCTGAGGGGCACGATGGTGGCATGCATGGTCTTGGACACATCGAT
GGAGCTGAAGCCATGGTCTGTGGGCATCCCATTGGACAGGAGGGTGCTTG
ACAAGGTTGTGGACACATTGTTGGAGCGGAAGCCATGGTTTGCGGGCAAC
CCATAGGGCACCCTGGAGCTTGGCAGGGTTGCGGGCACATCTGTGGAGCA
GCCATCATGGGAGGTTGCATCATCATAGCGGCACCTTGTGCACATCCTGA
GGGGCACGATGGTGGCGTGCATGGTCTTGGACACATCGATGGAGCTGAAG
CCATGGTCTGTGGGCATCCCATTGGACAGGAGGGTGCTTGACAAGGTTGT
GGGCACATTTGAGGTGCAGGCATCATGGGAGGAGGCATCATCATAGCCGC
GCCCTGTGCACATCCCGTGGGGCATGAGGGAGGCATGCATGGTCTTGGAC
ACATTGATGGTGCCGAAGCCATGGTTTGTGGGCATCCCATTGGACAAGAA
GGTGCCTGACAAGGTTGAGGGCACATCTGTGGAGCAGCCATCATTGGAGC
GGCTTGCATACAGCCAGTTGGACAAGATGGAGGCATACAGGGCTGTGGAC
ACATCGAAGGCATAGAAGCCATGGTCATGGGGCAACCCATTGGGCAACCT
GGAGCTTGACAAGGTTGTGGACACATCATCGGTTGAGGTGGTGACATTTG
CTGAAGGAGCTTCTCTGGCGAGAAATAAAATCGTGGCGACTCTTGACATC
CAGAAGGACAGCCTGGTTGTTGACAGGGCTGTGGACACATTGTTGGAGCT
GAAGCCATGGTTTGCGGGCATCCCATAGGGCACCCTGGAGCTTGGCAAGG
TTGTGGGCACATCTGTGGAGCAGCCATCATGGGAGGTGGCATCATCATAG
CGGCACCCTGGGCACATCCTGAGGGGCACGATGGTGGCATGCATGGTCTT
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNCGTTCTGTGGAGCAGCCATCATGGGAGGTGGCATCATCATAGCGGC
ACCCTGGGCACATCCTGAGGGGCACGATGGTGGCATGCATGGTCTTGGAC
ACATTGTTGGAGCTGAAGCCATGGTCTGCGGGCATCCCATAGGGCACCCT
GGAGCTTGGCAGGGTTGTGGGCACATCTGTGGAGCAGCCATCATGGGAGG
TGGCATCATCATAGCGGCACCCTGGGCACATCCTGAGGGGCACGATGGTG
GCATGCATGGTCTTGGACACATTGATGGTGCGGAAGCCATGGTTTGTGGG
CAACCCATTGGACAGGAGGGTGCTTGACAAGGTTGTGGGCACATCTGTGG
AGCAGCCATCATGGGAGGAGGCATCATCATAGCGGCACCTTGTGCACATC
CTGAGGGGCACGATGGTGGCATGCATGGTCTTGGACACATTGATGGTGCG
GAAGCCATGGTTTGTGGGCATCCCATTGGACAGGAGGGTGCTTGACAAGG
TTGAGGACACATTTGAGGAGCACCCATCATCGGTGCAGCTTGCAAACAGC
CATTTGGACAAGATGGAGGCATACAGGGCTGTGGGCACATTGAAGGCATG
GAAGCCATGGTCATGGGGCAACCCATCGGGCAACCTGGAGCTTGACAAGG
TTGTGGACACGTCTGCATCATTTTTTGAGGTGAAAAGTAAAGTCTTGGTG
TTTGTTGACACCCGATAGGACAAGAAGGTGGTTGGCAGGGTTGTGGACAC
ATAGATGGAGCAGCCATTGAAGTTGCTGGACATCCCATTGGACAAGCTGG
TGGTTGACAGGGTTGTGGACACATTGGTGGTGGAGCCATCATTTGAGTTT
GCATGCACCCAGAAGGACAAGCAGGTGGTTGACATGGTTGTGGGCACATT
GAAGGAGCTGAAGCCATTGTCTGTGGACATCCCATAGGGCAAGAGGCTCC
CTGGCATGGTTGAGGACATTGTTTTTGACATTGAGCTGGGCATGAGCTTG
GAGGACATGGTGTTGGGCAAGCCATAATGTTCACTGTCTGTTGTGTGGCG
ATGCATCCTGGTGGACATGGGTGAGGGCAAGGGTTGGGGCAGCCACCAAG
AGGAGGGGCAGATGCAGCTGAGGGTGGAGGATTAGCTGATGGTCCGTATA
CTGGAATGTCTAAAGTGATGGGGCATCCGGTTGGACAGTTGCTGGATGGA
CAGGGTCTTGGACACATGGCTGGTAAAGCAGACATGGTGAAGGGGCAACC
ACTTGGGCAGGCTGGAGGTTGGCAGGGCTGTGGGCACATTTGTTGTGGTC
GGGCAGCTCCCAAGCAAGAGGATGGGCATGATGGTGGTAGACATGGGTTA
GAGCAGATTGGTGTTGGTGGGATCACAGTGATACCAGTTGTTTGTGGGCA
ACCCATGGGACAACCAGAAGGTGGACACATTGATGGACAGAAAGGAGGTT
GCATAGGCATTGGCATGGGAGCCATCATCTGACTTTGTTGACATGGATAT
GGACATGGAGAGGGGCATTGGAAGGGACATGGTGGTTGACCCATAACTGG
ATCCCAGCTTTGTGCCAACATGTTGTAAATGAAAGGATCAACACCTTTTG
GAGGTTGCTGCTGTTGTCCTGATTGTTGTGAAGCAGGACGTTGGTAGGAG
TTCGATGATGAGGCTGAGGTAAGTGGGGAGCTTCTGGACATGGAGCCTAA
GCGATTCCGTTTTTCAGCGGTAGTGTTGGCATTGTCACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043884XLOC_043884Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070489-exon-scaffold_56-1491911889:858684..860389TCONS_00070489-exon-scaffold_56-1491911889:858684..860389Clytia hemisphaericaexon
TCONS_00070489-exon-scaffold_56-1510915933:858684..860389TCONS_00070489-exon-scaffold_56-1510915933:858684..860389Clytia hemisphaericaexon
TCONS_00070489-exon-scaffold_56-1575043694:858684..860389TCONS_00070489-exon-scaffold_56-1575043694:858684..860389Clytia hemisphaericaexon
TCONS_00070489-exon-scaffold_56-1491911889:860558..860821TCONS_00070489-exon-scaffold_56-1491911889:860558..860821Clytia hemisphaericaexon
TCONS_00070489-exon-scaffold_56-1510915933:860558..860821TCONS_00070489-exon-scaffold_56-1510915933:860558..860821Clytia hemisphaericaexon
TCONS_00070489-exon-scaffold_56-1575043694:860558..860821TCONS_00070489-exon-scaffold_56-1575043694:860558..860821Clytia hemisphaericaexon
TCONS_00070489-exon-scaffold_56-1491911889:861754..863222TCONS_00070489-exon-scaffold_56-1491911889:861754..863222Clytia hemisphaericaexon
TCONS_00070489-exon-scaffold_56-1510915933:861754..863222TCONS_00070489-exon-scaffold_56-1510915933:861754..863222Clytia hemisphaericaexon
TCONS_00070489-exon-scaffold_56-1575043694:861754..863222TCONS_00070489-exon-scaffold_56-1575043694:861754..863222Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_56supercontigscaffold_56:858684..863222 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.00377032	0	0	0	0.391189	0.476444	5.76973	5.28782	0.254871	0.395393	3.18385	1.89302	2.96031	2.45766	1.32555	6.00438	3.86002	2.51518	0.0172473	0.129625	1.07937	0.628125	0.917804	0.86558	2.15195	2.22911	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070489 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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