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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070477 ID=TCONS_00070477|Name=TCONS_00070477|organism=Clytia hemisphaerica|type=transcript|length=1769bpRun BLAST on NCBI protein sequence of TCONS_00070477-protein >TCONS_00070477-protein ID=TCONS_00070477-protein|Name=TCONS_00070477-protein|organism=Clytia hemisphaerica|type=polypeptide|length=422bp MKVLKTIFKGSISITAVVLGIKLQHDRLSTNHILTAKETPKYTLEHVQLVRun BLAST on NCBI transcript from alignment at scaffold_56:720326..725825+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070477 ID=TCONS_00070477|Name=TCONS_00070477|organism=Clytia hemisphaerica|type=transcript|length=5500bp|location=Sequence derived from alignment at scaffold_56:720326..725825+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_56:720326..725825+ >TCONS_00070477 ID=TCONS_00070477|Name=TCONS_00070477|organism=Clytia hemisphaerica|type=CDS|length=11421bp|location=Sequence derived from alignment at scaffold_56:720326..725825+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00070477 vs. Swiss-Prot (Human)
Match: PPA6 (Lysophosphatidic acid phosphatase type 6 OS=Homo sapiens GN=ACP6 PE=1 SV=2) HSP 1 Score: 158.688 bits (400), Expect = 2.538e-42 Identity = 113/383 (29.50%), Postives = 201/383 (52.48%), Query Frame = 1
Query: 298 LEHVQLVFRHGARTPVCTYDLPGVEPAVWEPEKFLGDLPHTNVEYTLKLVSTGEEISLESIDPSSWSKRRLKGGMQTGKLTKNGQQMAFDVGQHLQKEYIQERKFISSIYNPNEIRVRTSSFQRTVGTVKSMLAGLYGKDQIREPIEMWTVRSQEEYLYPNFYQCPNLNRHFKVAKKDFINFRPDIREITIDINKKLGLVEKEQMIDVFHLLDLMHTREAHGFKALPDNLTQEDRKKIERAASKLFSFIIQGDNDRNILRLSVGALIEDLCQNIEEKVKN---PKKVHKMEFVSAHDTTLQGLLMVTNQWKDEWPYYVSLFKIELYKD-EASEHYVRLEFNGQTIFLDQSQHEEMVPIRTFLEKMEKFRV--KDYKLECSKEE 1428
L+ VQ+VFRHGAR+P+ LP E W P+ L P T +YT+ ++ G + S S + + LKGGM G+LTK G Q F +G+ L+K Y+++ F+S +NP E+ +R+++ R + + + +LAGL+ + Q PI + T + E LYPN+ C +L + ++ + +P I E + ++G ++ +D F LLD + +AH + P + + + IE+ A +I+ + DR L+++VG + L N+ + V + P K+ K+ +AHD T LLM + +WP + +ELY+ E+ E +V+L ++G+ + + + + P+ FL M + + + Y CS+ +
Sbjct: 50 LKMVQVVFRHGARSPL--KPLPLEEQVEWNPQ-LLEVPPQTQFDYTVTNLAGGPKPY--SPYDSQYHETTLKGGMFAGQLTKVGMQQMFALGERLRKNYVEDIPFLSPTFNPQEVFIRSTNIFRNLESTRCLLAGLF-QCQKEGPIIIHTDEADSEVLYPNYQSCWSLRQR-TRGRRQTASLQPGISEDLKKVKDRMG-IDSSDKVDFFILLDNVAAEQAHNLPSCP--MLKRFARMIEQRAVDTSLYILPKE-DRESLQMAVGPFLHILESNLLKAVDSATAPDKIRKLYLYAAHDVTFIPLLMTLGIFDHKWPPFAVDLTMELYQHLESKEWFVQLYYHGKEQ-VPRGCPDGLCPLDMFLNAMSVYTLSPEKYHALCSQTQ 420 The following BLAST results are available for this feature:
BLAST of TCONS_00070477 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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