TCONS_00070380 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070380
Unique NameTCONS_00070380
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1952

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070380 ID=TCONS_00070380|Name=TCONS_00070380|organism=Clytia hemisphaerica|type=transcript|length=1952bp
GTTTCAGTTGGGGATTGCGAAATGGCAATTTACTAGTATTGCAAGTAAAA
CCGGTTTTCTCGAAACCAAAAGAGTGGCTTGTGCATCGCAACATAATCTC
AAACTACAACACACTTGGACTTTGTCAACTACACAATTAAACTCATATCA
AGATGTCTCGCGGTATTACCGATAAGAAAGTATGTCTCATCGGGGCGGGC
CCATGCGGTATCACCCTTCTCTCCGCCTTCAGTGACGCCAAATCACGTGG
TGAAGCTATTCCACAAGTAGTATGTTTCGAAAAACAAGAACAAATCAGTG
GTTTATGGAACTACACATGGCGTACTGGCCTCACAGCCCATGGTGATGCT
TTACCAAACAGTATGTACCGCCATCTCTGGTCAAACGGACCTAAAGAATG
CTTAGAATTTCCAGACTACACTTTCATGGATCATTTCAAGAAACCAATCC
CTTCCTTCCCTCCAAGAGCTGTCCTTCAAGACTACATTCTCGGAAAAGCC
AACAAATACAACGTCGGACAATTCGTCAAAACAAGTCACGCCGTACGTCA
CGTCGAAGAAAAAGGTACACAATTCTTGGTCACTTATGAAGATTTAGTCA
ACCACCAAACCTATAACGAAGTTTTTGATTATGTTGTATGCGCCACCGGT
CATTACACCGTGCCACACTTCCCACAATATCCCggattagacaaatttga
cgGCCGTGTCATGCACGCGCATGATTTCCGAAGTGCAgaagaatttaaaa
acaaaaccattgTCTTGATTGGATCCAGTTACTCTGCTGAAGACATTTCA
TTGCAATTGTACAAATATGGTGCTAAGAAATGCATCATTTCATACCGTAA
GAATCCTATGGGATACAAATGGCCTGCTGCTATCGTTGAGAAACCAGCCC
TTATCAAGGTTGAAGGAAGCAACAAATTCCATTTCACTGATGGTACAATT
GAAgaagttgatgacgtcatcttttgTACCGGCTACCAGCATTATTTCCC
ATTCATGTCACAGAATTTGCGTTTATTCGCCACCAACATCATGTATCCTG
ACCATCTCTACAAGGGAATCATGTGGCATCGTAATCCAAATTGTTTGTAC
ATGGGAATGTCTGATCAATATTACACTTACACAATGTTCGACACACAAGG
ATTATGGATCCGCGATTACGTCATGGGTAAGATCAATATCGGAGACGTTG
GCAAACGTTCAGAACACATGAAACAATGGTACGATCGTGGCCAAGCACTC
AAGAATGCTGTCGAAGAAATCGAATTCCAACGTGATTATGTACATGATCT
TGTCGCAGACATGCCAAACTACCCAAAGAAACATGACATCAATATCATTG
CTGAACATTTGAAAGTATGGAAAGTGCACAAGAGTGAAGATATCTTGACG
TACCGAGATCACTCTTTCACCTCACCCAATGATGGTCATTTAGCCTGCAA
ACACGTTCTTCCATGGATCAAGTCCTTTGATGATTCACTTGAAGGGTATG
TCAACCAAACCGAAAAATCACAACCTGCATAAAAACCTTTGCCACCAGTT
TACAtcaaaacgtcaaaacaacCTTAAAAGAACGTTGAAACAAGTTTGCG
TGTCAACCGGGTTTTTGCGTCTGTACAGGATCTAGGCTGCTTCGAATATT
GATTATCTTGGTATTTATCAATTATGGAAGTGAGTTTGATAGCTTATTAG
TCGGTTTTAGTCCTTTCGGACCTACATGCGCTTATGTCGGAATTATAATC
GCATTGACTTTAAGAATTTAAATTCTTTATGACTGTTACCGTACACTTTA
CATTTTAAAGGGAAACTTTATGTTTGACAGGCCCGCTAAGGAAATTGTAA
ATACTAAATATTATATTATGTATATCATGTCATGATATGTTTTTATATCT
caagaaacaattaaaaatgaaaaaaaaatcttccagTTGCAACAtaacaa
aa
Run BLAST on NCBI

protein sequence of TCONS_00070380-protein

>TCONS_00070380-protein ID=TCONS_00070380-protein|Name=TCONS_00070380-protein|organism=Clytia hemisphaerica|type=polypeptide|length=459bp
MSRGITDKKVCLIGAGPCGITLLSAFSDAKSRGEAIPQVVCFEKQEQISG
LWNYTWRTGLTAHGDALPNSMYRHLWSNGPKECLEFPDYTFMDHFKKPIP
SFPPRAVLQDYILGKANKYNVGQFVKTSHAVRHVEEKGTQFLVTYEDLVN
HQTYNEVFDYVVCATGHYTVPHFPQYPGLDKFDGRVMHAHDFRSAEEFKN
KTIVLIGSSYSAEDISLQLYKYGAKKCIISYRKNPMGYKWPAAIVEKPAL
IKVEGSNKFHFTDGTIEEVDDVIFCTGYQHYFPFMSQNLRLFATNIMYPD
HLYKGIMWHRNPNCLYMGMSDQYYTYTMFDTQGLWIRDYVMGKINIGDVG
KRSEHMKQWYDRGQALKNAVEEIEFQRDYVHDLVADMPNYPKKHDINIIA
EHLKVWKVHKSEDILTYRDHSFTSPNDGHLACKHVLPWIKSFDDSLEGYV
NQTEKSQPA
Run BLAST on NCBI

transcript from alignment at scaffold_55:353901..358089+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070380 ID=TCONS_00070380|Name=TCONS_00070380|organism=Clytia hemisphaerica|type=transcript|length=4189bp|location=Sequence derived from alignment at scaffold_55:353901..358089+ (Clytia hemisphaerica)
GTTTCAGTTGGGGATTGCGAAATGGCAATTTACTAGTATTGCAAGTAAAA
CCGGTAAAACCGGTTCAGAATTATTTGCAATGTAGAAGGGTGCCTTCGGT
TCACTAGTAGTAAAATCTCACATCATAACACGGCGACAGTTTGAAGTATC
ATCGTCAGATCTGGGTTCTATTGAAAACTTCCGAACTCTTTTGTCTTGCA
AATGAGAATCACTACCAATCTATTTTTATAAGCGGATGGGTTCATGGTTT
cacaaacaacattacattgtTTAGATTTCCTaatacatatcaaaatttgt
aaTATAGATTTGGGGGATTCCCTTGTACTACACAGATAAATACGAGCTTA
TATTCCTTTGCTTCTCTACACAGGTTTTCTCGAAACCAAAAGAGTGGCTT
GTGCATCGCAACATAATCTCAAACTACAACACACTTGGACTTTGTCAACT
ACACAATTAGTAAGTTATTTGTATTTCTTACTATATTATATTACTGTTAT
TCTCCGTATCTTACACGCGTCCAAAATTCTTTCTGACGcttatttctttt
gttgtgGTGTGGGTGATACACAGTTAATAACCACATTCTGTGTCCCTCAG
ATGTGTATCTGTTTATTATGATTTAATATTATTCTTTAAATGCAATGTTT
ACGCCTCAGTGATATGAAACCTTGGTGATCCCAGAAATAGCTCGGACACG
TTACAATATTTTCATTGAGTCACTAAGATTGTTCCTAAATTGAATGTCCC
CGGAGTCAGATCAGGTCAGATACTGCATTATGAGATCCAAAGTGTCTGTT
TTGTATATCCAAGTTGCTAATTCAAAGGGGttttaaattgagaaatgcAA
GTCCAAGGGGGTCCAGGTCTTGAGggtcaaaacaataaaatgaacCTCTT
CTCTCAACAGGTTCTACAAGTTTTCTTGTTGAATAGTTTGATCCTAGTTT
CTTCTTGAgcatctttgaaaaaaataatgtttttgggaaattttgcaaaa
tatttgCCCTCTGAGGGGAACTTATATGAGATCTTGTATCAGAATATTGA
TGATATCATTTTATCTCCAGAACTCATATCAAGATGTCTCGCGGTATTAC
CGATAAGAAAGTATGTCTCATCGGGGCGGGCCCATGCGGTATCACCCTTC
TCTCCGCCTTCAGTGACGCCAAATCACGTGGTGAAGCTATTCCACAAGTA
GTATGTTTCGAAAAACAAGAACAAATCAGTGGTTTATGGAACTACACATG
GCGTACTGGCCTCACAGCCCATGGTGATGCTTTACCAAACAGTATGTACC
GCCATCTCTGGTCAAACGGACCTAAAGAATGCTTAGAATTTCCAGACTAC
ACTTTCATGGATCATTTCAAGAAACCAATCCCTTCCTTCCCTCCAAGAGC
TGTCCTTCAAGACTACATTCTCGGAAAAGCCAACAAATACAACGTCGGAC
AATTCGTCAAAACAAGTCACGCCGTACGTCACGTCGAAGAAAAAGGTACA
CAATTCTTGGTCACTTATGAAGATTTAGTCAACCACCAAACCTATAACGA
AGTTTTTGATTATGTTGTATGCGCCACCGGTCATTACACCGTGCCACACT
TCCCACAATATCCCggattagacaaatttgacgGCCGTGTCATGCACGCG
CATGATTTCCGAAGTGCAgaagaatttaaaaacaaaaccattgTCTTGAT
TGGATCCAGTTACTCTGCTGAAGACATTTCATTGCAATTGTACAAATATG
GTGCTAAGAAATGCATCATTTCATACCGTAAGAATCCTATGGGATACAAA
TGGCCTGCTGCTATCGTTGAGAAACCAGCCCTTATCAAGGTAAAGGAATT
TTCTAAGTTGACCTTCTCTTCCATATAATCTTCCTTAGATAAAAATAATT
AGTTAGTTATACAATATTGCCTATGTACTGACACGACTTTATTGTCTGGT
ATCAGCTCCGACCTAAAAGAAATGCCTTAAATTACGCTTTGATTTTATGG
CTATGCATTGTAGGTTAGTTTTACCTCTAAGCAGACAAAGCTCTCTAaca
acaaaatgttttgaatcCTTTTGACAAATACGATAAAGCTATTAAAAAAT
CATGATGCTCTAGGACCTCTAGCTATAGATTAAAAAGTAGTTACGAAATT
TATATAATCATTAACATTTTCCTCTTTCTTCAAATATTGTAGGTTGAAGG
AAGCAACAAATTCCATTTCACTGATGGTACAATTGAAgaagttgatgacg
tcatcttttgTACCGGCTACCAGCATTATTTCCCATTCATGTCACAGAAT
TTGCGTTTATTCGCCACCAACATCATGTATCCTGACCATCTCTACAAGGG
AATCATGTGGCATCGTAATCCAAATTGTTTGTACATGGGAATGTCTGATC
AATATTACACTTACACAATGTTCGACACACAAGGTTAGCGAGAATTTCGA
CCCCAGCTGCCACACAACGTGGGTTGTTCCAACGTTTATccaatgttcat
aacgtccatttaacgttagatgaacgttgaaacgacgttgtgtgtcagct
gggacgGTTACCAATACCATTAagagttcttccgtctcagacggattttc
gtctcaGTGAAAGTATATAAAGAATTTTCCTTCTCCAAATctctgcataa
ttcaccaaaatttcaaaaatatgtgCTCATTTCCtttgtaaaatccattt
tccactGTCTTATGTAGATAACGAAAGCCATTACGTAGCGTCAGCTCGTC
TTGACTGACAGCTTGAAATACTATACTATTGTTTTAAGGAGAATTGAGAC
TGACATCCCGACTTCTTCAAATATTTGCTTgataaaaaatctacaaaatc
aaCCCCAATGCATCCAAATTATATCCACCTGTAAGCCGCTATCAGTTTGC
GATTTGATTAATTAGCAAATCTAATAATCCCACATAATTCATATTTATCT
TACTTTTTTTCCTAAAGGATTATGGATCCGCGATTACGTCATGGGTAAGA
TCAATATCGGAGACGTTGGCAAACGTTCAGAACACATGAAACAATGGTAC
GATCGTGGCCAAGCACTCAAGAATGCTGTCGAAGAAATCGAATTCCAACG
TGATTATGTACATGATCTTGTCGCAGTAAGTCTTCCATaacttttcattg
aaaaataactaGTTACTTGttactagtttgagtaaagaaaacgatttaag
ttaatttcatactgtcaaagtttcatgccatccaggatggcaatcttcag
tgaaatcttAGTTACTTGTTCCTCCATGTATGTATGTAAACGAGTTGAAG
TAAGAGGAAAGAAAAATCATGTGAGTAGGTAGTTGGTTAGTATTTTCATA
GCCATACACTTAGAAACCCTTAAAAGACAATTTCTCATCCTAAAGGACTT
TCAAACCTGGCACTGAATACAGGGCTCTTAACATTTGGAACGGTTCCTTA
ANAGCGAAACGAAACCGTCACGTGAGAACATGGTCTTAACATTTGGAACG
ATTCCTTCTATTTTTCTTAATTATCGTCTTTTTCGTCTCTCCAGGACATG
CCAAACTACCCAAAGAAACATGACATCAATATCATTGCTGAACATTTGAA
AGTATGGAAAGTGCACAAGAGTGAAGATATCTTGACGTACCGAGATCACT
CTTTCACCTCACCCAATGATGGTCATTTAGCCTGCAAACACGTTCTTCCA
TGGATCAAGTCCTTTGATGATTCACTTGAAGGGTATGTCAACCAAACCGA
AAAATCACAACCTGCATAAAAACCTTTGCCACCAGTTTACAtcaaaacgt
caaaacaacCTTAAAAGAACGTTGAAACAAGTTTGCGTGTCAACCGGGTT
TTTGCGTCTGTACAGGATCTAGGCTGCTTCGAATATTGATTATCTTGGTA
TTTATCAATTATGGAAGTGAGTTTGATAGCTTATTAGTCGGTTTTAGTCC
TTTCGGACCTACATGCGCTTATGTCGGAATTATAATCGCATTGACTTTAA
GAATTTAAATTCTTTATGACTGTTACCGTACACTTTACATTTTAAAGGGA
AACTTTATGTTTGACAGGCCCGCTAAGGAAATTGTAAATACTAAATATTA
TATTATGTATATCATGTCATGATATGTTTTTATATCTcaagaaacaatta
aaaatgaaaaaaaaatcttccagTTGCAACAtaacaaaa

Coding sequence (CDS) from alignment at scaffold_55:353901..358089+

>TCONS_00070380 ID=TCONS_00070380|Name=TCONS_00070380|organism=Clytia hemisphaerica|type=CDS|length=5520bp|location=Sequence derived from alignment at scaffold_55:353901..358089+ (Clytia hemisphaerica)
ATGTCTCGCGGTATTACCGATAAGAAAGTATGTCTCATCGGGGCGGGCCC
ATGCGGTATCACCCTTCTCTCCGCCTTCAGTGACGCCAAATCACGTGGTG
AAGCTATTCCACAAGTAGTATGTTTCGAAAAACAAGAACAAATCAGTGGT
TTATGGAACTACACATGGCGTACTGGCCTCACAGCCCATGGTGATGCTTT
ACCAAACAGTATGTACCGCCATCTCTGGTCAAACGGACCTAAAGAATGCT
TAGAATTTCCAGACTACACTTTCATGGATCATTTCAAGAAACCAATCCCT
TCCTTCCCTCCAAGAGCTGTCCTTCAAGACTACATTCTCGGAAAAGCCAA
CAAATACAACGTCGGACAATTCGTCAAAACAAGTCACGCCGTACGTCACG
TCGAAGAAAAAGGTACACAATTCTTGGTCACTTATGAAGATTTAGTCAAC
CACCAAACCTATAACGAAGTTTTTGATTATGTTGTATGCGCCACCGGTCA
TTACACCGTGCCACACTTCCCACAATATCCCggattagacaaatttgacg
GCCGTGTCATGCACGCGCATGATTTCCGAAGTGCAgaagaatttaaaaac
aaaaccattgTCTTGATTGGATCCAGTTACTCTGCTGAAGACATTTCATT
GCAATTGTACAAATATGGTGCTAAGAAATGCATCATTTCATACCGTAAGA
ATCCTATGGGATACAAATGGCCTGCTGCTATCGTTGAGAAACCAGCCCTT
ATCAAGGTTGAAGGAAGCAACAAATTCCATTTCACTGATGGTACAATTGA
AgaagttgatgacgtcatcttttgTACCGGCTACCAGCATTATTTCCCAT
TCATGTCACAGAATTTGCGTTTATTCGCCACCAACATCATGTATCCTGAC
CATCTCTACAAGGGAATCATGTGGCATCGTAATCCAAATTGTTTGTACAT
GGGAATGTCTGATCAATATTACACTTACACAATGTTCGACACACAAGGAT
TATGGATCCGCGATTACGTCATGGGTAAGATCAATATCGGAGACGTTGGC
AAACGTTCAGAACACATGAAACAATGGTACGATCGTGGCCAAGCACTCAA
GAATGCTGTCGAAGAAATCGAATTCCAACGTGATTATGTACATGATCTTG
TCGCAGACATGCCAAACTACCCAAAGAAACATGACATCAATATCATTGCT
GAACATTTGAAAGTATGGAAAGTGCACAAGAGTGAAGATATCTTGACGTA
CCGAGATCACTCTTTCACCTCACCCAATGATGGTCATTTAGCCTGCAAAC
ACGTTCTTCCATGGATCAAGTCCTTTGATGATTCACTTGAAGGGTATGTC
AACCAAACCGAAAAATCACAACCTGCATAAATGTCTCGCGGTATTACCGA
TAAGAAAGTATGTCTCATCGGGGCGGGCCCATGCGGTATCACCCTTCTCT
CCGCCTTCAGTGACGCCAAATCACGTGGTGAAGCTATTCCACAAGTAGTA
TGTTTCGAAAAACAAGAACAAATCAGTGGTTTATGGAACTACACATGGCG
TACTGGCCTCACAGCCCATGGTGATGCTTTACCAAACAGTATGTACCGCC
ATCTCTGGTCAAACGGACCTAAAGAATGCTTAGAATTTCCAGACTACACT
TTCATGGATCATTTCAAGAAACCAATCCCTTCCTTCCCTCCAAGAGCTGT
CCTTCAAGACTACATTCTCGGAAAAGCCAACAAATACAACGTCGGACAAT
TCGTCAAAACAAGTCACGCCGTACGTCACGTCGAAGAAAAAGGTACACAA
TTCTTGGTCACTTATGAAGATTTAGTCAACCACCAAACCTATAACGAAGT
TTTTGATTATGTTGTATGCGCCACCGGTCATTACACCGTGCCACACTTCC
CACAATATCCCggattagacaaatttgacgGCCGTGTCATGCACGCGCAT
GATTTCCGAAGTGCAgaagaatttaaaaacaaaaccattgTCTTGATTGG
ATCCAGTTACTCTGCTGAAGACATTTCATTGCAATTGTACAAATATGGTG
CTAAGAAATGCATCATTTCATACCGTAAGAATCCTATGGGATACAAATGG
CCTGCTGCTATCGTTGAGAAACCAGCCCTTATCAAGGTTGAAGGAAGCAA
CAAATTCCATTTCACTGATGGTACAATTGAAgaagttgatgacgtcatct
tttgTACCGGCTACCAGCATTATTTCCCATTCATGTCACAGAATTTGCGT
TTATTCGCCACCAACATCATGTATCCTGACCATCTCTACAAGGGAATCAT
GTGGCATCGTAATCCAAATTGTTTGTACATGGGAATGTCTGATCAATATT
ACACTTACACAATGTTCGACACACAAGGATTATGGATCCGCGATTACGTC
ATGGGTAAGATCAATATCGGAGACGTTGGCAAACGTTCAGAACACATGAA
ACAATGGTACGATCGTGGCCAAGCACTCAAGAATGCTGTCGAAGAAATCG
AATTCCAACGTGATTATGTACATGATCTTGTCGCAGACATGCCAAACTAC
CCAAAGAAACATGACATCAATATCATTGCTGAACATTTGAAAGTATGGAA
AGTGCACAAGAGTGAAGATATCTTGACGTACCGAGATCACTCTTTCACCT
CACCCAATGATGGTCATTTAGCCTGCAAACACGTTCTTCCATGGATCAAG
TCCTTTGATGATTCACTTGAAGGGTATGTCAACCAAACCGAAAAATCACA
ACCTGCATAAATGTCTCGCGGTATTACCGATAAGAAAGTATGTCTCATCG
GGGCGGGCCCATGCGGTATCACCCTTCTCTCCGCCTTCAGTGACGCCAAA
TCACGTGGTGAAGCTATTCCACAAGTAGTATGTTTCGAAAAACAAGAACA
AATCAGTGGTTTATGGAACTACACATGGCGTACTGGCCTCACAGCCCATG
GTGATGCTTTACCAAACAGTATGTACCGCCATCTCTGGTCAAACGGACCT
AAAGAATGCTTAGAATTTCCAGACTACACTTTCATGGATCATTTCAAGAA
ACCAATCCCTTCCTTCCCTCCAAGAGCTGTCCTTCAAGACTACATTCTCG
GAAAAGCCAACAAATACAACGTCGGACAATTCGTCAAAACAAGTCACGCC
GTACGTCACGTCGAAGAAAAAGGTACACAATTCTTGGTCACTTATGAAGA
TTTAGTCAACCACCAAACCTATAACGAAGTTTTTGATTATGTTGTATGCG
CCACCGGTCATTACACCGTGCCACACTTCCCACAATATCCCggattagac
aaatttgacgGCCGTGTCATGCACGCGCATGATTTCCGAAGTGCAgaaga
atttaaaaacaaaaccattgTCTTGATTGGATCCAGTTACTCTGCTGAAG
ACATTTCATTGCAATTGTACAAATATGGTGCTAAGAAATGCATCATTTCA
TACCGTAAGAATCCTATGGGATACAAATGGCCTGCTGCTATCGTTGAGAA
ACCAGCCCTTATCAAGGTTGAAGGAAGCAACAAATTCCATTTCACTGATG
GTACAATTGAAgaagttgatgacgtcatcttttgTACCGGCTACCAGCAT
TATTTCCCATTCATGTCACAGAATTTGCGTTTATTCGCCACCAACATCAT
GTATCCTGACCATCTCTACAAGGGAATCATGTGGCATCGTAATCCAAATT
GTTTGTACATGGGAATGTCTGATCAATATTACACTTACACAATGTTCGAC
ACACAAGGATTATGGATCCGCGATTACGTCATGGGTAAGATCAATATCGG
AGACGTTGGCAAACGTTCAGAACACATGAAACAATGGTACGATCGTGGCC
AAGCACTCAAGAATGCTGTCGAAGAAATCGAATTCCAACGTGATTATGTA
CATGATCTTGTCGCAGACATGCCAAACTACCCAAAGAAACATGACATCAA
TATCATTGCTGAACATTTGAAAGTATGGAAAGTGCACAAGAGTGAAGATA
TCTTGACGTACCGAGATCACTCTTTCACCTCACCCAATGATGGTCATTTA
GCCTGCAAACACGTTCTTCCATGGATCAAGTCCTTTGATGATTCACTTGA
AGGGTATGTCAACCAAACCGAAAAATCACAACCTGCATAAATGTCTCGCG
GTATTACCGATAAGAAAGTATGTCTCATCGGGGCGGGCCCATGCGGTATC
ACCCTTCTCTCCGCCTTCAGTGACGCCAAATCACGTGGTGAAGCTATTCC
ACAAGTAGTATGTTTCGAAAAACAAGAACAAATCAGTGGTTTATGGAACT
ACACATGGCGTACTGGCCTCACAGCCCATGGTGATGCTTTACCAAACAGT
ATGTACCGCCATCTCTGGTCAAACGGACCTAAAGAATGCTTAGAATTTCC
AGACTACACTTTCATGGATCATTTCAAGAAACCAATCCCTTCCTTCCCTC
CAAGAGCTGTCCTTCAAGACTACATTCTCGGAAAAGCCAACAAATACAAC
GTCGGACAATTCGTCAAAACAAGTCACGCCGTACGTCACGTCGAAGAAAA
AGGTACACAATTCTTGGTCACTTATGAAGATTTAGTCAACCACCAAACCT
ATAACGAAGTTTTTGATTATGTTGTATGCGCCACCGGTCATTACACCGTG
CCACACTTCCCACAATATCCCggattagacaaatttgacgGCCGTGTCAT
GCACGCGCATGATTTCCGAAGTGCAgaagaatttaaaaacaaaaccattg
TCTTGATTGGATCCAGTTACTCTGCTGAAGACATTTCATTGCAATTGTAC
AAATATGGTGCTAAGAAATGCATCATTTCATACCGTAAGAATCCTATGGG
ATACAAATGGCCTGCTGCTATCGTTGAGAAACCAGCCCTTATCAAGGTTG
AAGGAAGCAACAAATTCCATTTCACTGATGGTACAATTGAAgaagttgat
gacgtcatcttttgTACCGGCTACCAGCATTATTTCCCATTCATGTCACA
GAATTTGCGTTTATTCGCCACCAACATCATGTATCCTGACCATCTCTACA
AGGGAATCATGTGGCATCGTAATCCAAATTGTTTGTACATGGGAATGTCT
GATCAATATTACACTTACACAATGTTCGACACACAAGGATTATGGATCCG
CGATTACGTCATGGGTAAGATCAATATCGGAGACGTTGGCAAACGTTCAG
AACACATGAAACAATGGTACGATCGTGGCCAAGCACTCAAGAATGCTGTC
GAAGAAATCGAATTCCAACGTGATTATGTACATGATCTTGTCGCAGACAT
GCCAAACTACCCAAAGAAACATGACATCAATATCATTGCTGAACATTTGA
AAGTATGGAAAGTGCACAAGAGTGAAGATATCTTGACGTACCGAGATCAC
TCTTTCACCTCACCCAATGATGGTCATTTAGCCTGCAAACACGTTCTTCC
ATGGATCAAGTCCTTTGATGATTCACTTGAAGGGTATGTCAACCAAACCG
AAAAATCACAACCTGCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043836XLOC_043836Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070380-exon-scaffold_55-1491911889:353901..353953TCONS_00070380-exon-scaffold_55-1491911889:353901..353953Clytia hemisphaericaexon
TCONS_00070380-exon-scaffold_55-1510915933:353901..353953TCONS_00070380-exon-scaffold_55-1510915933:353901..353953Clytia hemisphaericaexon
TCONS_00070380-exon-scaffold_55-1575043694:353901..353953TCONS_00070380-exon-scaffold_55-1575043694:353901..353953Clytia hemisphaericaexon
TCONS_00070380-exon-scaffold_55-1491911889:354274..354359TCONS_00070380-exon-scaffold_55-1491911889:354274..354359Clytia hemisphaericaexon
TCONS_00070380-exon-scaffold_55-1510915933:354274..354359TCONS_00070380-exon-scaffold_55-1510915933:354274..354359Clytia hemisphaericaexon
TCONS_00070380-exon-scaffold_55-1575043694:354274..354359TCONS_00070380-exon-scaffold_55-1575043694:354274..354359Clytia hemisphaericaexon
TCONS_00070380-exon-scaffold_55-1491911889:354971..355739TCONS_00070380-exon-scaffold_55-1491911889:354971..355739Clytia hemisphaericaexon
TCONS_00070380-exon-scaffold_55-1510915933:354971..355739TCONS_00070380-exon-scaffold_55-1510915933:354971..355739Clytia hemisphaericaexon
TCONS_00070380-exon-scaffold_55-1575043694:354971..355739TCONS_00070380-exon-scaffold_55-1575043694:354971..355739Clytia hemisphaericaexon
TCONS_00070380-exon-scaffold_55-1491911889:356093..356333TCONS_00070380-exon-scaffold_55-1491911889:356093..356333Clytia hemisphaericaexon
TCONS_00070380-exon-scaffold_55-1510915933:356093..356333TCONS_00070380-exon-scaffold_55-1510915933:356093..356333Clytia hemisphaericaexon
TCONS_00070380-exon-scaffold_55-1575043694:356093..356333TCONS_00070380-exon-scaffold_55-1575043694:356093..356333Clytia hemisphaericaexon
TCONS_00070380-exon-scaffold_55-1491911889:356868..357025TCONS_00070380-exon-scaffold_55-1491911889:356868..357025Clytia hemisphaericaexon
TCONS_00070380-exon-scaffold_55-1510915933:356868..357025TCONS_00070380-exon-scaffold_55-1510915933:356868..357025Clytia hemisphaericaexon
TCONS_00070380-exon-scaffold_55-1575043694:356868..357025TCONS_00070380-exon-scaffold_55-1575043694:356868..357025Clytia hemisphaericaexon
TCONS_00070380-exon-scaffold_55-1491911889:357445..358089TCONS_00070380-exon-scaffold_55-1491911889:357445..358089Clytia hemisphaericaexon
TCONS_00070380-exon-scaffold_55-1510915933:357445..358089TCONS_00070380-exon-scaffold_55-1510915933:357445..358089Clytia hemisphaericaexon
TCONS_00070380-exon-scaffold_55-1575043694:357445..358089TCONS_00070380-exon-scaffold_55-1575043694:357445..358089Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070380-proteinTCONS_00070380-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_55supercontigscaffold_55:353901..358089 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.27098	5.29456e-09	1.36103e-07	5.99739	216.051	202.345	128.869	184.415	1.3657	6.82647	1.7253e-06	10.6272	32.0267	5.51145	168.694	121.519	255.9	168.457	110.191	248.041	249.532	323.201	153.095	162.591	14.737	7.7789	29.1252	75.8991	321.44	276.602
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR023753FAD/NAD-binding_dom
IPR020946Flavin_mOase-like
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO:0004499N,N-dimethylaniline monooxygenase activity
GO:0050661NADP binding
GO:0050660flavin adenine dinucleotide binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0050660 flavin adenine dinucleotide binding
molecular_function GO:0050661 NADP binding
molecular_function GO:0004499 N,N-dimethylaniline monooxygenase activity
molecular_function GO:0016491 oxidoreductase activity
Blast
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BLAST of TCONS_00070380 vs. Swiss-Prot (Human)
Match: FMO6 (Putative dimethylaniline monooxygenase [N-oxide-forming] 6 OS=Homo sapiens GN=FMO6P PE=5 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.125e-23
Identity = 70/231 (30.30%), Postives = 126/231 (54.55%), Query Frame = 3 
Query:  174 KKVCLIGAGPCGITLLSAFSDAKSRGEAIPQVVCFEKQEQISGLWNYTWRTGLTAHGDALPNSMYRHLWSNGPKECLEFPDYTFMDHFKKPIPSFPPRAVLQDYILGKANKYNVGQFVKTSHAVRHVEEKGTQFLVTYEDLV----NHQTYNEVFDYVVCATGHYTVPHFP--QYPGLDKFDGRVMHAHDFRSAEEFKNKTIVLIGSSYSAEDISLQLYKYGAKKCIISYR 848
            K+V +IGAG  G   L+A       G    +  CFE+ + + GLW ++       H +    S+Y+ +++N  KE + FPD+ + D +    P++   + LQ+YI   A K ++ ++++    V  ++ K   FLVT + +V    + +  + +FD V+  +GH+  P+ P   +PGLD+F G  +H+ D+++ E FK K +++IG   S  DI+++L +  A + IIS R
Sbjct:    3 KRVGIIGAGVSG---LAAIWCCLEEGL---EPTCFERSDDVGGLWKFS------DHTEEGRASIYQSVFTNSSKEMMCFPDFPYPDDY----PNYIHHSKLQEYIKTYAQKKDLLRYIQFETLVSGIK-KCPSFLVTGQWVVVTEKDGKQESTIFDAVMICSGHHVYPNLPTDSFPGLDQFRGNYLHSRDYKNPEAFKGKRVLVIGLGNSGSDIAVELSRL-ATQVIISTR 215
The following BLAST results are available for this feature:
BLAST of TCONS_00070380 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FMO61.125e-2330.30Putative dimethylaniline monooxygenase [N-oxide-fo... [more]
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