XLOC_043836 (gene) - C. hemisphaerica

Overview
NameXLOC_043836
Unique NameXLOC_043836
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_55:352270..358089+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_043836 ID=XLOC_043836|Name=XLOC_043836|organism=Clytia hemisphaerica|type=gene|length=5820bp|location=Sequence derived from alignment at scaffold_55:352270..358089+ (Clytia hemisphaerica)
CTAAATTttggttattggattttttGGTGAGGTCAGTGTGatttttgtat
tatttcttTTAGGTTTTTAATCTATTTCATCTTAGTTACAGAGTACAATC
GGCAGACATTGATCCAGTTTGATAATGACCGATGGAGCTCTGTTGAGTTC
GATTAATTTGAGAACGTCGGTTCAATTGCATAGCATTGTTTCTGACTAAC
TACTTCATGGGTATAGAAAGATTCGCGGGGTAAAAAGTTCATGAAAGTTG
GCGAAATCCTCTTAAAAGAACTTTCACTAAAAGATATTCCTTTTCGATAT
GAATTTGATAAAAAGTAGAAGAAGGAGAGAAAGGGAACACTAAAGTTGCG
GTGAAAAAGGCTTTAGATTTTATTTCTTACTTGCTAGAAAGTTTCGCCCA
GAAGGCgctgaaatcaagaaaatttgaaagtccAAAGGTGTTACTGATCG
GAGCAGAATTAATTTGTGATGCCTATGAGAATTTGAATCACCGGGAAGGA
ATCGGACTAACAGTAATTACAATTAttatgatacacgttttttttataag
aacaaactatataagaacataaggcttcgaggcccaaaaatttaagaaca
ttctaagaacattctaaggctttgaagacttaaaaacatgcattttctta
agaaattacatcaaaatgctaaagaaatgctgaaaataaaaacattataa
gaacatttttaggcttcaaatccaaaaaactaagaacatccgaaggcttt
gaaaatttttgacgttcttataaaaaaaaaacgtgtaattaatGATAATA
ATAGTAATTATGAAAGAATGTTAACACATCAGTTCGGCAAATTGCACAGA
TCGGCAACACTGCGAAATTCTGCATCTTTAGCGTTGCGATATTCCGCAAC
GTTGCGAAATTCCGCAGCTTTACTGCTGCATAATTTCGCAGCTCTGGCCT
TTGGACCAAAATCGGCATCGCAGGGCCTGGACCGGGGTCCcaaaatattg
agaattttgaagaacaacccaaaaggaaacttttcaccCTAGCATTTTTA
TTTCCTACCTAGCGATTATTCACAATCATTCTTGGAAGAAATGCTACTTC
GTTCAAAAAAGCGCTACTTTTTTCAAGAAAGCAAGTTTTTGGCTGATTTT
GCATGTGTTTGGAAGAAAATTGGTAGGcgctcataatttttaaaatcaca
agCTTCAATTGGAAGCGTTGCGTAAAGTAGCAGCGCAACCCTGGGGAAAC
GAGATTAGATTGAAAGAAGTGTTTATCgccagttttttttatttgctaca
gaataaaaaaaacacgcTGTTTTCTCTCATCCACGTTTGCAATTTACTGT
AACAAATGAATCACTATATCTCGGTTAGGAAAGGTTAAAGATCATTTTTT
TAGGCTTTACTAAATTAAACTTAGTCCTCTATCCGCTCGTACGATTTTGA
TATGTCAATATCATTGATGTAAATCGACGCTCTTTTAATTTATATTGCCC
GTTACTGTAGGATAGAAATTATACAATATTTCATAAAACTATATAACTTT
TTTGACCCCGGTTACGTTGTTATAAAAGATACAATATTATGGAAGGGTCA
AAATTCCGTAAAATTAGAAACGTAGATTTCTGTTTCAGTTGGGGATTGCG
AAATGGCAATTTACTAGTATTGCAAGTAAAACCGGTAAAACCGGTTCAGA
ATTATTTGCAATGTAGAAGGGTGCCTTCGGTTCACTAGTAGTAAAATCTC
ACATCATAACACGGCGACAGTTTGAAGTATCATCGTCAGATCTGGGTTCT
ATTGAAAACTTCCGAACTCTTTTGTCTTGCAAATGAGAATCACTACCAAT
CTATTTTTATAAGCGGATGGGTTCATGGTTTcacaaacaacattacattg
tTTAGATTTCCTaatacatatcaaaatttgtaaTATAGATTTGGGGGATT
CCCTTGTACTACACAGATAAATACGAGCTTATATTCCTTTGCTTCTCTAC
ACAGGTTTTCTCGAAACCAAAAGAGTGGCTTGTGCATCGCAACATAATCT
CAAACTACAACACACTTGGACTTTGTCAACTACACAATTAGTAAGTTATT
TGTATTTCTTACTATATTATATTACTGTTATTCTCCGTATCTTACACGCG
TCCAAAATTCTTTCTGACGcttatttcttttgttgtgGTGTGGGTGATAC
ACAGTTAATAACCACATTCTGTGTCCCTCAGATGTGTATCTGTTTATTAT
GATTTAATATTATTCTTTAAATGCAATGTTTACGCCTCAGTGATATGAAA
CCTTGGTGATCCCAGAAATAGCTCGGACACGTTACAATATTTTCATTGAG
TCACTAAGATTGTTCCTAAATTGAATGTCCCCGGAGTCAGATCAGGTCAG
ATACTGCATTATGAGATCCAAAGTGTCTGTTTTGTATATCCAAGTTGCTA
ATTCAAAGGGGttttaaattgagaaatgcAAGTCCAAGGGGGTCCAGGTC
TTGAGggtcaaaacaataaaatgaacCTCTTCTCTCAACAGGTTCTACAA
GTTTTCTTGTTGAATAGTTTGATCCTAGTTTCTTCTTGAgcatctttgaa
aaaaataatgtttttgggaaattttgcaaaatatttgCCCTCTGAGGGGA
ACTTATATGAGATCTTGTATCAGAATATTGATGATATCATTTTATCTCCA
GAACTCATATCAAGATGTCTCGCGGTATTACCGATAAGAAAGTATGTCTC
ATCGGGGCGGGCCCATGCGGTATCACCCTTCTCTCCGCCTTCAGTGACGC
CAAATCACGTGGTGAAGCTATTCCACAAGTAGTATGTTTCGAAAAACAAG
AACAAATCAGTGGTTTATGGAACTACACATGGCGTACTGGCCTCACAGCC
CATGGTGATGCTTTACCAAACAGTATGTACCGCCATCTCTGGTCAAACGG
ACCTAAAGAATGCTTAGAATTTCCAGACTACACTTTCATGGATCATTTCA
AGAAACCAATCCCTTCCTTCCCTCCAAGAGCTGTCCTTCAAGACTACATT
CTCGGAAAAGCCAACAAATACAACGTCGGACAATTCGTCAAAACAAGTCA
CGCCGTACGTCACGTCGAAGAAAAAGGTACACAATTCTTGGTCACTTATG
AAGATTTAGTCAACCACCAAACCTATAACGAAGTTTTTGATTATGTTGTA
TGCGCCACCGGTCATTACACCGTGCCACACTTCCCACAATATCCCggatt
agacaaatttgacgGCCGTGTCATGCACGCGCATGATTTCCGAAGTGCAg
aagaatttaaaaacaaaaccattgTCTTGATTGGATCCAGTTACTCTGCT
GAAGACATTTCATTGCAATTGTACAAATATGGTGCTAAGAAATGCATCAT
TTCATACCGTAAGAATCCTATGGGATACAAATGGCCTGCTGCTATCGTTG
AGAAACCAGCCCTTATCAAGGTAAAGGAATTTTCTAAGTTGACCTTCTCT
TCCATATAATCTTCCTTAGATAAAAATAATTAGTTAGTTATACAATATTG
CCTATGTACTGACACGACTTTATTGTCTGGTATCAGCTCCGACCTAAAAG
AAATGCCTTAAATTACGCTTTGATTTTATGGCTATGCATTGTAGGTTAGT
TTTACCTCTAAGCAGACAAAGCTCTCTAacaacaaaatgttttgaatcCT
TTTGACAAATACGATAAAGCTATTAAAAAATCATGATGCTCTAGGACCTC
TAGCTATAGATTAAAAAGTAGTTACGAAATTTATATAATCATTAACATTT
TCCTCTTTCTTCAAATATTGTAGGTTGAAGGAAGCAACAAATTCCATTTC
ACTGATGGTACAATTGAAgaagttgatgacgtcatcttttgTACCGGCTA
CCAGCATTATTTCCCATTCATGTCACAGAATTTGCGTTTATTCGCCACCA
ACATCATGTATCCTGACCATCTCTACAAGGGAATCATGTGGCATCGTAAT
CCAAATTGTTTGTACATGGGAATGTCTGATCAATATTACACTTACACAAT
GTTCGACACACAAGGTTAGCGAGAATTTCGACCCCAGCTGCCACACAACG
TGGGTTGTTCCAACGTTTATccaatgttcataacgtccatttaacgttag
atgaacgttgaaacgacgttgtgtgtcagctgggacgGTTACCAATACCA
TTAagagttcttccgtctcagacggattttcgtctcaGTGAAAGTATATA
AAGAATTTTCCTTCTCCAAATctctgcataattcaccaaaatttcaaaaa
tatgtgCTCATTTCCtttgtaaaatccattttccactGTCTTATGTAGAT
AACGAAAGCCATTACGTAGCGTCAGCTCGTCTTGACTGACAGCTTGAAAT
ACTATACTATTGTTTTAAGGAGAATTGAGACTGACATCCCGACTTCTTCA
AATATTTGCTTgataaaaaatctacaaaatcaaCCCCAATGCATCCAAAT
TATATCCACCTGTAAGCCGCTATCAGTTTGCGATTTGATTAATTAGCAAA
TCTAATAATCCCACATAATTCATATTTATCTTACTTTTTTTCCTAAAGGA
TTATGGATCCGCGATTACGTCATGGGTAAGATCAATATCGGAGACGTTGG
CAAACGTTCAGAACACATGAAACAATGGTACGATCGTGGCCAAGCACTCA
AGAATGCTGTCGAAGAAATCGAATTCCAACGTGATTATGTACATGATCTT
GTCGCAGTAAGTCTTCCATaacttttcattgaaaaataactaGTTACTTG
ttactagtttgagtaaagaaaacgatttaagttaatttcatactgtcaaa
gtttcatgccatccaggatggcaatcttcagtgaaatcttAGTTACTTGT
TCCTCCATGTATGTATGTAAACGAGTTGAAGTAAGAGGAAAGAAAAATCA
TGTGAGTAGGTAGTTGGTTAGTATTTTCATAGCCATACACTTAGAAACCC
TTAAAAGACAATTTCTCATCCTAAAGGACTTTCAAACCTGGCACTGAATA
CAGGGCTCTTAACATTTGGAACGGTTCCTTAANAGCGAAACGAAACCGTC
ACGTGAGAACATGGTCTTAACATTTGGAACGATTCCTTCTATTTTTCTTA
ATTATCGTCTTTTTCGTCTCTCCAGGACATGCCAAACTACCCAAAGAAAC
ATGACATCAATATCATTGCTGAACATTTGAAAGTATGGAAAGTGCACAAG
AGTGAAGATATCTTGACGTACCGAGATCACTCTTTCACCTCACCCAATGA
TGGTCATTTAGCCTGCAAACACGTTCTTCCATGGATCAAGTCCTTTGATG
ATTCACTTGAAGGGTATGTCAACCAAACCGAAAAATCACAACCTGCATAA
AAACCTTTGCCACCAGTTTACAtcaaaacgtcaaaacaacCTTAAAAGAA
CGTTGAAACAAGTTTGCGTGTCAACCGGGTTTTTGCGTCTGTACAGGATC
TAGGCTGCTTCGAATATTGATTATCTTGGTATTTATCAATTATGGAAGTG
AGTTTGATAGCTTATTAGTCGGTTTTAGTCCTTTCGGACCTACATGCGCT
TATGTCGGAATTATAATCGCATTGACTTTAAGAATTTAAATTCTTTATGA
CTGTTACCGTACACTTTACATTTTAAAGGGAAACTTTATGTTTGACAGGC
CCGCTAAGGAAATTGTAAATACTAAATATTATATTATGTATATCATGTCA
TGATATGTTTTTATATCTcaagaaacaattaaaaatgaaaaaaaaatctt
ccagTTGCAACAtaacaaaa
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00070378TCONS_00070378Clytia hemisphaericatranscript
TCONS_00070379TCONS_00070379Clytia hemisphaericatranscript
TCONS_00070380TCONS_00070380Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00070380-proteinTCONS_00070380-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_55supercontigscaffold_55:352270..358089 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.86	4.3	5.42	6	239.65	206.99	194.8	213.11	6.75	29.02	9.37	27.25	87.53	14.53	519.36	376.76	634.49	568.72	362.73	943.42	680.53	755.37	444.96	443.53	27.2	11.04	123.3	165.45	888.15	749.43