TCONS_00070380 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070380
Unique NameTCONS_00070380
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1952

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070380 ID=TCONS_00070380|Name=TCONS_00070380|organism=Clytia hemisphaerica|type=transcript|length=1952bp
GTTTCAGTTGGGGATTGCGAAATGGCAATTTACTAGTATTGCAAGTAAAA
CCGGTTTTCTCGAAACCAAAAGAGTGGCTTGTGCATCGCAACATAATCTC
AAACTACAACACACTTGGACTTTGTCAACTACACAATTAAACTCATATCA
AGATGTCTCGCGGTATTACCGATAAGAAAGTATGTCTCATCGGGGCGGGC
CCATGCGGTATCACCCTTCTCTCCGCCTTCAGTGACGCCAAATCACGTGG
TGAAGCTATTCCACAAGTAGTATGTTTCGAAAAACAAGAACAAATCAGTG
GTTTATGGAACTACACATGGCGTACTGGCCTCACAGCCCATGGTGATGCT
TTACCAAACAGTATGTACCGCCATCTCTGGTCAAACGGACCTAAAGAATG
CTTAGAATTTCCAGACTACACTTTCATGGATCATTTCAAGAAACCAATCC
CTTCCTTCCCTCCAAGAGCTGTCCTTCAAGACTACATTCTCGGAAAAGCC
AACAAATACAACGTCGGACAATTCGTCAAAACAAGTCACGCCGTACGTCA
CGTCGAAGAAAAAGGTACACAATTCTTGGTCACTTATGAAGATTTAGTCA
ACCACCAAACCTATAACGAAGTTTTTGATTATGTTGTATGCGCCACCGGT
CATTACACCGTGCCACACTTCCCACAATATCCCggattagacaaatttga
cgGCCGTGTCATGCACGCGCATGATTTCCGAAGTGCAgaagaatttaaaa
acaaaaccattgTCTTGATTGGATCCAGTTACTCTGCTGAAGACATTTCA
TTGCAATTGTACAAATATGGTGCTAAGAAATGCATCATTTCATACCGTAA
GAATCCTATGGGATACAAATGGCCTGCTGCTATCGTTGAGAAACCAGCCC
TTATCAAGGTTGAAGGAAGCAACAAATTCCATTTCACTGATGGTACAATT
GAAgaagttgatgacgtcatcttttgTACCGGCTACCAGCATTATTTCCC
ATTCATGTCACAGAATTTGCGTTTATTCGCCACCAACATCATGTATCCTG
ACCATCTCTACAAGGGAATCATGTGGCATCGTAATCCAAATTGTTTGTAC
ATGGGAATGTCTGATCAATATTACACTTACACAATGTTCGACACACAAGG
ATTATGGATCCGCGATTACGTCATGGGTAAGATCAATATCGGAGACGTTG
GCAAACGTTCAGAACACATGAAACAATGGTACGATCGTGGCCAAGCACTC
AAGAATGCTGTCGAAGAAATCGAATTCCAACGTGATTATGTACATGATCT
TGTCGCAGACATGCCAAACTACCCAAAGAAACATGACATCAATATCATTG
CTGAACATTTGAAAGTATGGAAAGTGCACAAGAGTGAAGATATCTTGACG
TACCGAGATCACTCTTTCACCTCACCCAATGATGGTCATTTAGCCTGCAA
ACACGTTCTTCCATGGATCAAGTCCTTTGATGATTCACTTGAAGGGTATG
TCAACCAAACCGAAAAATCACAACCTGCATAAAAACCTTTGCCACCAGTT
TACAtcaaaacgtcaaaacaacCTTAAAAGAACGTTGAAACAAGTTTGCG
TGTCAACCGGGTTTTTGCGTCTGTACAGGATCTAGGCTGCTTCGAATATT
GATTATCTTGGTATTTATCAATTATGGAAGTGAGTTTGATAGCTTATTAG
TCGGTTTTAGTCCTTTCGGACCTACATGCGCTTATGTCGGAATTATAATC
GCATTGACTTTAAGAATTTAAATTCTTTATGACTGTTACCGTACACTTTA
CATTTTAAAGGGAAACTTTATGTTTGACAGGCCCGCTAAGGAAATTGTAA
ATACTAAATATTATATTATGTATATCATGTCATGATATGTTTTTATATCT
caagaaacaattaaaaatgaaaaaaaaatcttccagTTGCAACAtaacaa
aa
Run BLAST on NCBI

protein sequence of TCONS_00070380-protein

>TCONS_00070380-protein ID=TCONS_00070380-protein|Name=TCONS_00070380-protein|organism=Clytia hemisphaerica|type=polypeptide|length=459bp
MSRGITDKKVCLIGAGPCGITLLSAFSDAKSRGEAIPQVVCFEKQEQISG
LWNYTWRTGLTAHGDALPNSMYRHLWSNGPKECLEFPDYTFMDHFKKPIP
SFPPRAVLQDYILGKANKYNVGQFVKTSHAVRHVEEKGTQFLVTYEDLVN
HQTYNEVFDYVVCATGHYTVPHFPQYPGLDKFDGRVMHAHDFRSAEEFKN
KTIVLIGSSYSAEDISLQLYKYGAKKCIISYRKNPMGYKWPAAIVEKPAL
IKVEGSNKFHFTDGTIEEVDDVIFCTGYQHYFPFMSQNLRLFATNIMYPD
HLYKGIMWHRNPNCLYMGMSDQYYTYTMFDTQGLWIRDYVMGKINIGDVG
KRSEHMKQWYDRGQALKNAVEEIEFQRDYVHDLVADMPNYPKKHDINIIA
EHLKVWKVHKSEDILTYRDHSFTSPNDGHLACKHVLPWIKSFDDSLEGYV
NQTEKSQPA
Run BLAST on NCBI

transcript from alignment at scaffold_55:353901..358089+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070380 ID=TCONS_00070380|Name=TCONS_00070380|organism=Clytia hemisphaerica|type=transcript|length=4189bp|location=Sequence derived from alignment at scaffold_55:353901..358089+ (Clytia hemisphaerica)
GTTTCAGTTGGGGATTGCGAAATGGCAATTTACTAGTATTGCAAGTAAAA CCGGTAAAACCGGTTCAGAATTATTTGCAATGTAGAAGGGTGCCTTCGGT TCACTAGTAGTAAAATCTCACATCATAACACGGCGACAGTTTGAAGTATC ATCGTCAGATCTGGGTTCTATTGAAAACTTCCGAACTCTTTTGTCTTGCA AATGAGAATCACTACCAATCTATTTTTATAAGCGGATGGGTTCATGGTTT cacaaacaacattacattgtTTAGATTTCCTaatacatatcaaaatttgt aaTATAGATTTGGGGGATTCCCTTGTACTACACAGATAAATACGAGCTTA TATTCCTTTGCTTCTCTACACAGGTTTTCTCGAAACCAAAAGAGTGGCTT GTGCATCGCAACATAATCTCAAACTACAACACACTTGGACTTTGTCAACT ACACAATTAGTAAGTTATTTGTATTTCTTACTATATTATATTACTGTTAT TCTCCGTATCTTACACGCGTCCAAAATTCTTTCTGACGcttatttctttt gttgtgGTGTGGGTGATACACAGTTAATAACCACATTCTGTGTCCCTCAG ATGTGTATCTGTTTATTATGATTTAATATTATTCTTTAAATGCAATGTTT ACGCCTCAGTGATATGAAACCTTGGTGATCCCAGAAATAGCTCGGACACG TTACAATATTTTCATTGAGTCACTAAGATTGTTCCTAAATTGAATGTCCC CGGAGTCAGATCAGGTCAGATACTGCATTATGAGATCCAAAGTGTCTGTT TTGTATATCCAAGTTGCTAATTCAAAGGGGttttaaattgagaaatgcAA GTCCAAGGGGGTCCAGGTCTTGAGggtcaaaacaataaaatgaacCTCTT CTCTCAACAGGTTCTACAAGTTTTCTTGTTGAATAGTTTGATCCTAGTTT CTTCTTGAgcatctttgaaaaaaataatgtttttgggaaattttgcaaaa tatttgCCCTCTGAGGGGAACTTATATGAGATCTTGTATCAGAATATTGA TGATATCATTTTATCTCCAGAACTCATATCAAGATGTCTCGCGGTATTAC CGATAAGAAAGTATGTCTCATCGGGGCGGGCCCATGCGGTATCACCCTTC TCTCCGCCTTCAGTGACGCCAAATCACGTGGTGAAGCTATTCCACAAGTA GTATGTTTCGAAAAACAAGAACAAATCAGTGGTTTATGGAACTACACATG GCGTACTGGCCTCACAGCCCATGGTGATGCTTTACCAAACAGTATGTACC GCCATCTCTGGTCAAACGGACCTAAAGAATGCTTAGAATTTCCAGACTAC ACTTTCATGGATCATTTCAAGAAACCAATCCCTTCCTTCCCTCCAAGAGC TGTCCTTCAAGACTACATTCTCGGAAAAGCCAACAAATACAACGTCGGAC AATTCGTCAAAACAAGTCACGCCGTACGTCACGTCGAAGAAAAAGGTACA CAATTCTTGGTCACTTATGAAGATTTAGTCAACCACCAAACCTATAACGA AGTTTTTGATTATGTTGTATGCGCCACCGGTCATTACACCGTGCCACACT TCCCACAATATCCCggattagacaaatttgacgGCCGTGTCATGCACGCG CATGATTTCCGAAGTGCAgaagaatttaaaaacaaaaccattgTCTTGAT TGGATCCAGTTACTCTGCTGAAGACATTTCATTGCAATTGTACAAATATG GTGCTAAGAAATGCATCATTTCATACCGTAAGAATCCTATGGGATACAAA TGGCCTGCTGCTATCGTTGAGAAACCAGCCCTTATCAAGGTAAAGGAATT TTCTAAGTTGACCTTCTCTTCCATATAATCTTCCTTAGATAAAAATAATT AGTTAGTTATACAATATTGCCTATGTACTGACACGACTTTATTGTCTGGT ATCAGCTCCGACCTAAAAGAAATGCCTTAAATTACGCTTTGATTTTATGG CTATGCATTGTAGGTTAGTTTTACCTCTAAGCAGACAAAGCTCTCTAaca acaaaatgttttgaatcCTTTTGACAAATACGATAAAGCTATTAAAAAAT CATGATGCTCTAGGACCTCTAGCTATAGATTAAAAAGTAGTTACGAAATT TATATAATCATTAACATTTTCCTCTTTCTTCAAATATTGTAGGTTGAAGG AAGCAACAAATTCCATTTCACTGATGGTACAATTGAAgaagttgatgacg tcatcttttgTACCGGCTACCAGCATTATTTCCCATTCATGTCACAGAAT TTGCGTTTATTCGCCACCAACATCATGTATCCTGACCATCTCTACAAGGG AATCATGTGGCATCGTAATCCAAATTGTTTGTACATGGGAATGTCTGATC AATATTACACTTACACAATGTTCGACACACAAGGTTAGCGAGAATTTCGA CCCCAGCTGCCACACAACGTGGGTTGTTCCAACGTTTATccaatgttcat aacgtccatttaacgttagatgaacgttgaaacgacgttgtgtgtcagct gggacgGTTACCAATACCATTAagagttcttccgtctcagacggattttc gtctcaGTGAAAGTATATAAAGAATTTTCCTTCTCCAAATctctgcataa ttcaccaaaatttcaaaaatatgtgCTCATTTCCtttgtaaaatccattt tccactGTCTTATGTAGATAACGAAAGCCATTACGTAGCGTCAGCTCGTC TTGACTGACAGCTTGAAATACTATACTATTGTTTTAAGGAGAATTGAGAC TGACATCCCGACTTCTTCAAATATTTGCTTgataaaaaatctacaaaatc aaCCCCAATGCATCCAAATTATATCCACCTGTAAGCCGCTATCAGTTTGC GATTTGATTAATTAGCAAATCTAATAATCCCACATAATTCATATTTATCT TACTTTTTTTCCTAAAGGATTATGGATCCGCGATTACGTCATGGGTAAGA TCAATATCGGAGACGTTGGCAAACGTTCAGAACACATGAAACAATGGTAC GATCGTGGCCAAGCACTCAAGAATGCTGTCGAAGAAATCGAATTCCAACG TGATTATGTACATGATCTTGTCGCAGTAAGTCTTCCATaacttttcattg aaaaataactaGTTACTTGttactagtttgagtaaagaaaacgatttaag ttaatttcatactgtcaaagtttcatgccatccaggatggcaatcttcag tgaaatcttAGTTACTTGTTCCTCCATGTATGTATGTAAACGAGTTGAAG TAAGAGGAAAGAAAAATCATGTGAGTAGGTAGTTGGTTAGTATTTTCATA GCCATACACTTAGAAACCCTTAAAAGACAATTTCTCATCCTAAAGGACTT TCAAACCTGGCACTGAATACAGGGCTCTTAACATTTGGAACGGTTCCTTA ANAGCGAAACGAAACCGTCACGTGAGAACATGGTCTTAACATTTGGAACG ATTCCTTCTATTTTTCTTAATTATCGTCTTTTTCGTCTCTCCAGGACATG CCAAACTACCCAAAGAAACATGACATCAATATCATTGCTGAACATTTGAA AGTATGGAAAGTGCACAAGAGTGAAGATATCTTGACGTACCGAGATCACT CTTTCACCTCACCCAATGATGGTCATTTAGCCTGCAAACACGTTCTTCCA TGGATCAAGTCCTTTGATGATTCACTTGAAGGGTATGTCAACCAAACCGA AAAATCACAACCTGCATAAAAACCTTTGCCACCAGTTTACAtcaaaacgt caaaacaacCTTAAAAGAACGTTGAAACAAGTTTGCGTGTCAACCGGGTT TTTGCGTCTGTACAGGATCTAGGCTGCTTCGAATATTGATTATCTTGGTA TTTATCAATTATGGAAGTGAGTTTGATAGCTTATTAGTCGGTTTTAGTCC TTTCGGACCTACATGCGCTTATGTCGGAATTATAATCGCATTGACTTTAA GAATTTAAATTCTTTATGACTGTTACCGTACACTTTACATTTTAAAGGGA AACTTTATGTTTGACAGGCCCGCTAAGGAAATTGTAAATACTAAATATTA TATTATGTATATCATGTCATGATATGTTTTTATATCTcaagaaacaatta aaaatgaaaaaaaaatcttccagTTGCAACAtaacaaaa

Coding sequence (CDS) from alignment at scaffold_55:353901..358089+

>TCONS_00070380 ID=TCONS_00070380|Name=TCONS_00070380|organism=Clytia hemisphaerica|type=CDS|length=5520bp|location=Sequence derived from alignment at scaffold_55:353901..358089+ (Clytia hemisphaerica)
ATGTCTCGCGGTATTACCGATAAGAAAGTATGTCTCATCGGGGCGGGCCC
ATGCGGTATCACCCTTCTCTCCGCCTTCAGTGACGCCAAATCACGTGGTG
AAGCTATTCCACAAGTAGTATGTTTCGAAAAACAAGAACAAATCAGTGGT
TTATGGAACTACACATGGCGTACTGGCCTCACAGCCCATGGTGATGCTTT
ACCAAACAGTATGTACCGCCATCTCTGGTCAAACGGACCTAAAGAATGCT
TAGAATTTCCAGACTACACTTTCATGGATCATTTCAAGAAACCAATCCCT
TCCTTCCCTCCAAGAGCTGTCCTTCAAGACTACATTCTCGGAAAAGCCAA
CAAATACAACGTCGGACAATTCGTCAAAACAAGTCACGCCGTACGTCACG
TCGAAGAAAAAGGTACACAATTCTTGGTCACTTATGAAGATTTAGTCAAC
CACCAAACCTATAACGAAGTTTTTGATTATGTTGTATGCGCCACCGGTCA
TTACACCGTGCCACACTTCCCACAATATCCCggattagacaaatttgacg
GCCGTGTCATGCACGCGCATGATTTCCGAAGTGCAgaagaatttaaaaac
aaaaccattgTCTTGATTGGATCCAGTTACTCTGCTGAAGACATTTCATT
GCAATTGTACAAATATGGTGCTAAGAAATGCATCATTTCATACCGTAAGA
ATCCTATGGGATACAAATGGCCTGCTGCTATCGTTGAGAAACCAGCCCTT
ATCAAGGTTGAAGGAAGCAACAAATTCCATTTCACTGATGGTACAATTGA
AgaagttgatgacgtcatcttttgTACCGGCTACCAGCATTATTTCCCAT
TCATGTCACAGAATTTGCGTTTATTCGCCACCAACATCATGTATCCTGAC
CATCTCTACAAGGGAATCATGTGGCATCGTAATCCAAATTGTTTGTACAT
GGGAATGTCTGATCAATATTACACTTACACAATGTTCGACACACAAGGAT
TATGGATCCGCGATTACGTCATGGGTAAGATCAATATCGGAGACGTTGGC
AAACGTTCAGAACACATGAAACAATGGTACGATCGTGGCCAAGCACTCAA
GAATGCTGTCGAAGAAATCGAATTCCAACGTGATTATGTACATGATCTTG
TCGCAGACATGCCAAACTACCCAAAGAAACATGACATCAATATCATTGCT
GAACATTTGAAAGTATGGAAAGTGCACAAGAGTGAAGATATCTTGACGTA
CCGAGATCACTCTTTCACCTCACCCAATGATGGTCATTTAGCCTGCAAAC
ACGTTCTTCCATGGATCAAGTCCTTTGATGATTCACTTGAAGGGTATGTC
AACCAAACCGAAAAATCACAACCTGCATAAATGTCTCGCGGTATTACCGA
TAAGAAAGTATGTCTCATCGGGGCGGGCCCATGCGGTATCACCCTTCTCT
CCGCCTTCAGTGACGCCAAATCACGTGGTGAAGCTATTCCACAAGTAGTA
TGTTTCGAAAAACAAGAACAAATCAGTGGTTTATGGAACTACACATGGCG
TACTGGCCTCACAGCCCATGGTGATGCTTTACCAAACAGTATGTACCGCC
ATCTCTGGTCAAACGGACCTAAAGAATGCTTAGAATTTCCAGACTACACT
TTCATGGATCATTTCAAGAAACCAATCCCTTCCTTCCCTCCAAGAGCTGT
CCTTCAAGACTACATTCTCGGAAAAGCCAACAAATACAACGTCGGACAAT
TCGTCAAAACAAGTCACGCCGTACGTCACGTCGAAGAAAAAGGTACACAA
TTCTTGGTCACTTATGAAGATTTAGTCAACCACCAAACCTATAACGAAGT
TTTTGATTATGTTGTATGCGCCACCGGTCATTACACCGTGCCACACTTCC
CACAATATCCCggattagacaaatttgacgGCCGTGTCATGCACGCGCAT
GATTTCCGAAGTGCAgaagaatttaaaaacaaaaccattgTCTTGATTGG
ATCCAGTTACTCTGCTGAAGACATTTCATTGCAATTGTACAAATATGGTG
CTAAGAAATGCATCATTTCATACCGTAAGAATCCTATGGGATACAAATGG
CCTGCTGCTATCGTTGAGAAACCAGCCCTTATCAAGGTTGAAGGAAGCAA
CAAATTCCATTTCACTGATGGTACAATTGAAgaagttgatgacgtcatct
tttgTACCGGCTACCAGCATTATTTCCCATTCATGTCACAGAATTTGCGT
TTATTCGCCACCAACATCATGTATCCTGACCATCTCTACAAGGGAATCAT
GTGGCATCGTAATCCAAATTGTTTGTACATGGGAATGTCTGATCAATATT
ACACTTACACAATGTTCGACACACAAGGATTATGGATCCGCGATTACGTC
ATGGGTAAGATCAATATCGGAGACGTTGGCAAACGTTCAGAACACATGAA
ACAATGGTACGATCGTGGCCAAGCACTCAAGAATGCTGTCGAAGAAATCG
AATTCCAACGTGATTATGTACATGATCTTGTCGCAGACATGCCAAACTAC
CCAAAGAAACATGACATCAATATCATTGCTGAACATTTGAAAGTATGGAA
AGTGCACAAGAGTGAAGATATCTTGACGTACCGAGATCACTCTTTCACCT
CACCCAATGATGGTCATTTAGCCTGCAAACACGTTCTTCCATGGATCAAG
TCCTTTGATGATTCACTTGAAGGGTATGTCAACCAAACCGAAAAATCACA
ACCTGCATAAATGTCTCGCGGTATTACCGATAAGAAAGTATGTCTCATCG
GGGCGGGCCCATGCGGTATCACCCTTCTCTCCGCCTTCAGTGACGCCAAA
TCACGTGGTGAAGCTATTCCACAAGTAGTATGTTTCGAAAAACAAGAACA
AATCAGTGGTTTATGGAACTACACATGGCGTACTGGCCTCACAGCCCATG
GTGATGCTTTACCAAACAGTATGTACCGCCATCTCTGGTCAAACGGACCT
AAAGAATGCTTAGAATTTCCAGACTACACTTTCATGGATCATTTCAAGAA
ACCAATCCCTTCCTTCCCTCCAAGAGCTGTCCTTCAAGACTACATTCTCG
GAAAAGCCAACAAATACAACGTCGGACAATTCGTCAAAACAAGTCACGCC
GTACGTCACGTCGAAGAAAAAGGTACACAATTCTTGGTCACTTATGAAGA
TTTAGTCAACCACCAAACCTATAACGAAGTTTTTGATTATGTTGTATGCG
CCACCGGTCATTACACCGTGCCACACTTCCCACAATATCCCggattagac
aaatttgacgGCCGTGTCATGCACGCGCATGATTTCCGAAGTGCAgaaga
atttaaaaacaaaaccattgTCTTGATTGGATCCAGTTACTCTGCTGAAG
ACATTTCATTGCAATTGTACAAATATGGTGCTAAGAAATGCATCATTTCA
TACCGTAAGAATCCTATGGGATACAAATGGCCTGCTGCTATCGTTGAGAA
ACCAGCCCTTATCAAGGTTGAAGGAAGCAACAAATTCCATTTCACTGATG
GTACAATTGAAgaagttgatgacgtcatcttttgTACCGGCTACCAGCAT
TATTTCCCATTCATGTCACAGAATTTGCGTTTATTCGCCACCAACATCAT
GTATCCTGACCATCTCTACAAGGGAATCATGTGGCATCGTAATCCAAATT
GTTTGTACATGGGAATGTCTGATCAATATTACACTTACACAATGTTCGAC
ACACAAGGATTATGGATCCGCGATTACGTCATGGGTAAGATCAATATCGG
AGACGTTGGCAAACGTTCAGAACACATGAAACAATGGTACGATCGTGGCC
AAGCACTCAAGAATGCTGTCGAAGAAATCGAATTCCAACGTGATTATGTA
CATGATCTTGTCGCAGACATGCCAAACTACCCAAAGAAACATGACATCAA
TATCATTGCTGAACATTTGAAAGTATGGAAAGTGCACAAGAGTGAAGATA
TCTTGACGTACCGAGATCACTCTTTCACCTCACCCAATGATGGTCATTTA
GCCTGCAAACACGTTCTTCCATGGATCAAGTCCTTTGATGATTCACTTGA
AGGGTATGTCAACCAAACCGAAAAATCACAACCTGCATAAATGTCTCGCG
GTATTACCGATAAGAAAGTATGTCTCATCGGGGCGGGCCCATGCGGTATC
ACCCTTCTCTCCGCCTTCAGTGACGCCAAATCACGTGGTGAAGCTATTCC
ACAAGTAGTATGTTTCGAAAAACAAGAACAAATCAGTGGTTTATGGAACT
ACACATGGCGTACTGGCCTCACAGCCCATGGTGATGCTTTACCAAACAGT
ATGTACCGCCATCTCTGGTCAAACGGACCTAAAGAATGCTTAGAATTTCC
AGACTACACTTTCATGGATCATTTCAAGAAACCAATCCCTTCCTTCCCTC
CAAGAGCTGTCCTTCAAGACTACATTCTCGGAAAAGCCAACAAATACAAC
GTCGGACAATTCGTCAAAACAAGTCACGCCGTACGTCACGTCGAAGAAAA
AGGTACACAATTCTTGGTCACTTATGAAGATTTAGTCAACCACCAAACCT
ATAACGAAGTTTTTGATTATGTTGTATGCGCCACCGGTCATTACACCGTG
CCACACTTCCCACAATATCCCggattagacaaatttgacgGCCGTGTCAT
GCACGCGCATGATTTCCGAAGTGCAgaagaatttaaaaacaaaaccattg
TCTTGATTGGATCCAGTTACTCTGCTGAAGACATTTCATTGCAATTGTAC
AAATATGGTGCTAAGAAATGCATCATTTCATACCGTAAGAATCCTATGGG
ATACAAATGGCCTGCTGCTATCGTTGAGAAACCAGCCCTTATCAAGGTTG
AAGGAAGCAACAAATTCCATTTCACTGATGGTACAATTGAAgaagttgat
gacgtcatcttttgTACCGGCTACCAGCATTATTTCCCATTCATGTCACA
GAATTTGCGTTTATTCGCCACCAACATCATGTATCCTGACCATCTCTACA
AGGGAATCATGTGGCATCGTAATCCAAATTGTTTGTACATGGGAATGTCT
GATCAATATTACACTTACACAATGTTCGACACACAAGGATTATGGATCCG
CGATTACGTCATGGGTAAGATCAATATCGGAGACGTTGGCAAACGTTCAG
AACACATGAAACAATGGTACGATCGTGGCCAAGCACTCAAGAATGCTGTC
GAAGAAATCGAATTCCAACGTGATTATGTACATGATCTTGTCGCAGACAT
GCCAAACTACCCAAAGAAACATGACATCAATATCATTGCTGAACATTTGA
AAGTATGGAAAGTGCACAAGAGTGAAGATATCTTGACGTACCGAGATCAC
TCTTTCACCTCACCCAATGATGGTCATTTAGCCTGCAAACACGTTCTTCC
ATGGATCAAGTCCTTTGATGATTCACTTGAAGGGTATGTCAACCAAACCG
AAAAATCACAACCTGCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043836XLOC_043836Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070380-exon-scaffold_55-1491911889:353901..353953TCONS_00070380-exon-scaffold_55-1491911889:353901..353953Clytia hemisphaericaexon
TCONS_00070380-exon-scaffold_55-1510915933:353901..353953TCONS_00070380-exon-scaffold_55-1510915933:353901..353953Clytia hemisphaericaexon
TCONS_00070380-exon-scaffold_55-1575043694:353901..353953TCONS_00070380-exon-scaffold_55-1575043694:353901..353953Clytia hemisphaericaexon
TCONS_00070380-exon-scaffold_55-1491911889:354274..354359TCONS_00070380-exon-scaffold_55-1491911889:354274..354359Clytia hemisphaericaexon
TCONS_00070380-exon-scaffold_55-1510915933:354274..354359TCONS_00070380-exon-scaffold_55-1510915933:354274..354359Clytia hemisphaericaexon
TCONS_00070380-exon-scaffold_55-1575043694:354274..354359TCONS_00070380-exon-scaffold_55-1575043694:354274..354359Clytia hemisphaericaexon
TCONS_00070380-exon-scaffold_55-1491911889:354971..355739TCONS_00070380-exon-scaffold_55-1491911889:354971..355739Clytia hemisphaericaexon
TCONS_00070380-exon-scaffold_55-1510915933:354971..355739TCONS_00070380-exon-scaffold_55-1510915933:354971..355739Clytia hemisphaericaexon
TCONS_00070380-exon-scaffold_55-1575043694:354971..355739TCONS_00070380-exon-scaffold_55-1575043694:354971..355739Clytia hemisphaericaexon
TCONS_00070380-exon-scaffold_55-1491911889:356093..356333TCONS_00070380-exon-scaffold_55-1491911889:356093..356333Clytia hemisphaericaexon
TCONS_00070380-exon-scaffold_55-1510915933:356093..356333TCONS_00070380-exon-scaffold_55-1510915933:356093..356333Clytia hemisphaericaexon
TCONS_00070380-exon-scaffold_55-1575043694:356093..356333TCONS_00070380-exon-scaffold_55-1575043694:356093..356333Clytia hemisphaericaexon
TCONS_00070380-exon-scaffold_55-1491911889:356868..357025TCONS_00070380-exon-scaffold_55-1491911889:356868..357025Clytia hemisphaericaexon
TCONS_00070380-exon-scaffold_55-1510915933:356868..357025TCONS_00070380-exon-scaffold_55-1510915933:356868..357025Clytia hemisphaericaexon
TCONS_00070380-exon-scaffold_55-1575043694:356868..357025TCONS_00070380-exon-scaffold_55-1575043694:356868..357025Clytia hemisphaericaexon
TCONS_00070380-exon-scaffold_55-1491911889:357445..358089TCONS_00070380-exon-scaffold_55-1491911889:357445..358089Clytia hemisphaericaexon
TCONS_00070380-exon-scaffold_55-1510915933:357445..358089TCONS_00070380-exon-scaffold_55-1510915933:357445..358089Clytia hemisphaericaexon
TCONS_00070380-exon-scaffold_55-1575043694:357445..358089TCONS_00070380-exon-scaffold_55-1575043694:357445..358089Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070380-proteinTCONS_00070380-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_55supercontigscaffold_55:353901..358089 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.27098 5.29456e-09 1.36103e-07 5.99739 216.051 202.345 128.869 184.415 1.3657 6.82647 1.7253e-06 10.6272 32.0267 5.51145 168.694 121.519 255.9 168.457 110.191 248.041 249.532 323.201 153.095 162.591 14.737 7.7789 29.1252 75.8991 321.44 276.602
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR023753FAD/NAD-binding_dom
IPR020946Flavin_mOase-like
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO:0004499N,N-dimethylaniline monooxygenase activity
GO:0050661NADP binding
GO:0050660flavin adenine dinucleotide binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0050660 flavin adenine dinucleotide binding
molecular_function GO:0050661 NADP binding
molecular_function GO:0004499 N,N-dimethylaniline monooxygenase activity
molecular_function GO:0016491 oxidoreductase activity
Blast
BLAST of TCONS_00070380 vs. Swiss-Prot (Human)
Match: FMO6 (Putative dimethylaniline monooxygenase [N-oxide-forming] 6 OS=Homo sapiens GN=FMO6P PE=5 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.125e-23
Identity = 70/231 (30.30%), Postives = 126/231 (54.55%), Query Frame = 3
Query:  174 KKVCLIGAGPCGITLLSAFSDAKSRGEAIPQVVCFEKQEQISGLWNYTWRTGLTAHGDALPNSMYRHLWSNGPKECLEFPDYTFMDHFKKPIPSFPPRAVLQDYILGKANKYNVGQFVKTSHAVRHVEEKGTQFLVTYEDLV----NHQTYNEVFDYVVCATGHYTVPHFP--QYPGLDKFDGRVMHAHDFRSAEEFKNKTIVLIGSSYSAEDISLQLYKYGAKKCIISYR 848
            K+V +IGAG  G   L+A       G    +  CFE+ + + GLW ++       H +    S+Y+ +++N  KE + FPD+ + D +    P++   + LQ+YI   A K ++ ++++    V  ++ K   FLVT + +V    + +  + +FD V+  +GH+  P+ P   +PGLD+F G  +H+ D+++ E FK K +++IG   S  DI+++L +  A + IIS R
Sbjct:    3 KRVGIIGAGVSG---LAAIWCCLEEGL---EPTCFERSDDVGGLWKFS------DHTEEGRASIYQSVFTNSSKEMMCFPDFPYPDDY----PNYIHHSKLQEYIKTYAQKKDLLRYIQFETLVSGIK-KCPSFLVTGQWVVVTEKDGKQESTIFDAVMICSGHHVYPNLPTDSFPGLDQFRGNYLHSRDYKNPEAFKGKRVLVIGLGNSGSDIAVELSRL-ATQVIISTR 215          
The following BLAST results are available for this feature:
BLAST of TCONS_00070380 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FMO61.125e-2330.30Putative dimethylaniline monooxygenase [N-oxide-fo... [more]
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