TCONS_00070378 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070378
Unique NameTCONS_00070378
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1930

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070378 ID=TCONS_00070378|Name=TCONS_00070378|organism=Clytia hemisphaerica|type=transcript|length=1930bp
CTAAATTttggttattggattttttGGTGAGGTTTTCTCGAAACCAAAAG
AGTGGCTTGTGCATCGCAACATAATCTCAAACTACAACACACTTGGACTT
TGTCAACTACACAATTAAACTCATATCAAGATGTCTCGCGGTATTACCGA
TAAGAAAGTATGTCTCATCGGGGCGGGCCCATGCGGTATCACCCTTCTCT
CCGCCTTCAGTGACGCCAAATCACGTGGTGAAGCTATTCCACAAGTAGTA
TGTTTCGAAAAACAAGAACAAATCAGTGGTTTATGGAACTACACATGGCG
TACTGGCCTCACAGCCCATGGTGATGCTTTACCAAACAGTATGTACCGCC
ATCTCTGGTCAAACGGACCTAAAGAATGCTTAGAATTTCCAGACTACACT
TTCATGGATCATTTCAAGAAACCAATCCCTTCCTTCCCTCCAAGAGCTGT
CCTTCAAGACTACATTCTCGGAAAAGCCAACAAATACAACGTCGGACAAT
TCGTCAAAACAAGTCACGCCGTACGTCACGTCGAAGAAAAAGGTACACAA
TTCTTGGTCACTTATGAAGATTTAGTCAACCACCAAACCTATAACGAAGT
TTTTGATTATGTTGTATGCGCCACCGGTCATTACACCGTGCCACACTTCC
CACAATATCCCggattagacaaatttgacgGCCGTGTCATGCACGCGCAT
GATTTCCGAAGTGCAgaagaatttaaaaacaaaaccattgTCTTGATTGG
ATCCAGTTACTCTGCTGAAGACATTTCATTGCAATTGTACAAATATGGTG
CTAAGAAATGCATCATTTCATACCGTAAGAATCCTATGGGATACAAATGG
CCTGCTGCTATCGTTGAGAAACCAGCCCTTATCAAGGTTGAAGGAAGCAA
CAAATTCCATTTCACTGATGGTACAATTGAAgaagttgatgacgtcatct
tttgTACCGGCTACCAGCATTATTTCCCATTCATGTCACAGAATTTGCGT
TTATTCGCCACCAACATCATGTATCCTGACCATCTCTACAAGGGAATCAT
GTGGCATCGTAATCCAAATTGTTTGTACATGGGAATGTCTGATCAATATT
ACACTTACACAATGTTCGACACACAAGGATTATGGATCCGCGATTACGTC
ATGGGTAAGATCAATATCGGAGACGTTGGCAAACGTTCAGAACACATGAA
ACAATGGTACGATCGTGGCCAAGCACTCAAGAATGCTGTCGAAGAAATCG
AATTCCAACGTGATTATGTACATGATCTTGTCGCAGACATGCCAAACTAC
CCAAAGAAACATGACATCAATATCATTGCTGAACATTTGAAAGTATGGAA
AGTGCACAAGAGTGAAGATATCTTGACGTACCGAGATCACTCTTTCACCT
CACCCAATGATGGTCATTTAGCCTGCAAACACGTTCTTCCATGGATCAAG
TCCTTTGATGATTCACTTGAAGGGTATGTCAACCAAACCGAAAAATCACA
ACCTGCATAAAAACCTTTGCCACCAGTTTACAtcaaaacgtcaaaacaac
CTTAAAAGAACGTTGAAACAAGTTTGCGTGTCAACCGGGTTTTTGCGTCT
GTACAGGATCTAGGCTGCTTCGAATATTGATTATCTTGGTATTTATCAAT
TATGGAAGTGAGTTTGATAGCTTATTAGTCGGTTTTAGTCCTTTCGGACC
TACATGCGCTTATGTCGGAATTATAATCGCATTGACTTTAAGAATTTAAA
TTCTTTATGACTGTTACCGTACACTTTACATTTTAAAGGGAAACTTTATG
TTTGACAGGCCCGCTAAGGAAATTGTAAATACTAAATATTATATTATGTA
TATCATGTCATGATATGTTTTTATATCTcaagaaacaattaaaaatgaaa
aaaaaatcttccagTTGCAACAtaacaaaa
Run BLAST on NCBI

transcript from alignment at scaffold_55:352270..358089+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070378 ID=TCONS_00070378|Name=TCONS_00070378|organism=Clytia hemisphaerica|type=transcript|length=5820bp|location=Sequence derived from alignment at scaffold_55:352270..358089+ (Clytia hemisphaerica)
CTAAATTttggttattggattttttGGTGAGGTCAGTGTGatttttgtat
tatttcttTTAGGTTTTTAATCTATTTCATCTTAGTTACAGAGTACAATC
GGCAGACATTGATCCAGTTTGATAATGACCGATGGAGCTCTGTTGAGTTC
GATTAATTTGAGAACGTCGGTTCAATTGCATAGCATTGTTTCTGACTAAC
TACTTCATGGGTATAGAAAGATTCGCGGGGTAAAAAGTTCATGAAAGTTG
GCGAAATCCTCTTAAAAGAACTTTCACTAAAAGATATTCCTTTTCGATAT
GAATTTGATAAAAAGTAGAAGAAGGAGAGAAAGGGAACACTAAAGTTGCG
GTGAAAAAGGCTTTAGATTTTATTTCTTACTTGCTAGAAAGTTTCGCCCA
GAAGGCgctgaaatcaagaaaatttgaaagtccAAAGGTGTTACTGATCG
GAGCAGAATTAATTTGTGATGCCTATGAGAATTTGAATCACCGGGAAGGA
ATCGGACTAACAGTAATTACAATTAttatgatacacgttttttttataag
aacaaactatataagaacataaggcttcgaggcccaaaaatttaagaaca
ttctaagaacattctaaggctttgaagacttaaaaacatgcattttctta
agaaattacatcaaaatgctaaagaaatgctgaaaataaaaacattataa
gaacatttttaggcttcaaatccaaaaaactaagaacatccgaaggcttt
gaaaatttttgacgttcttataaaaaaaaaacgtgtaattaatGATAATA
ATAGTAATTATGAAAGAATGTTAACACATCAGTTCGGCAAATTGCACAGA
TCGGCAACACTGCGAAATTCTGCATCTTTAGCGTTGCGATATTCCGCAAC
GTTGCGAAATTCCGCAGCTTTACTGCTGCATAATTTCGCAGCTCTGGCCT
TTGGACCAAAATCGGCATCGCAGGGCCTGGACCGGGGTCCcaaaatattg
agaattttgaagaacaacccaaaaggaaacttttcaccCTAGCATTTTTA
TTTCCTACCTAGCGATTATTCACAATCATTCTTGGAAGAAATGCTACTTC
GTTCAAAAAAGCGCTACTTTTTTCAAGAAAGCAAGTTTTTGGCTGATTTT
GCATGTGTTTGGAAGAAAATTGGTAGGcgctcataatttttaaaatcaca
agCTTCAATTGGAAGCGTTGCGTAAAGTAGCAGCGCAACCCTGGGGAAAC
GAGATTAGATTGAAAGAAGTGTTTATCgccagttttttttatttgctaca
gaataaaaaaaacacgcTGTTTTCTCTCATCCACGTTTGCAATTTACTGT
AACAAATGAATCACTATATCTCGGTTAGGAAAGGTTAAAGATCATTTTTT
TAGGCTTTACTAAATTAAACTTAGTCCTCTATCCGCTCGTACGATTTTGA
TATGTCAATATCATTGATGTAAATCGACGCTCTTTTAATTTATATTGCCC
GTTACTGTAGGATAGAAATTATACAATATTTCATAAAACTATATAACTTT
TTTGACCCCGGTTACGTTGTTATAAAAGATACAATATTATGGAAGGGTCA
AAATTCCGTAAAATTAGAAACGTAGATTTCTGTTTCAGTTGGGGATTGCG
AAATGGCAATTTACTAGTATTGCAAGTAAAACCGGTAAAACCGGTTCAGA
ATTATTTGCAATGTAGAAGGGTGCCTTCGGTTCACTAGTAGTAAAATCTC
ACATCATAACACGGCGACAGTTTGAAGTATCATCGTCAGATCTGGGTTCT
ATTGAAAACTTCCGAACTCTTTTGTCTTGCAAATGAGAATCACTACCAAT
CTATTTTTATAAGCGGATGGGTTCATGGTTTcacaaacaacattacattg
tTTAGATTTCCTaatacatatcaaaatttgtaaTATAGATTTGGGGGATT
CCCTTGTACTACACAGATAAATACGAGCTTATATTCCTTTGCTTCTCTAC
ACAGGTTTTCTCGAAACCAAAAGAGTGGCTTGTGCATCGCAACATAATCT
CAAACTACAACACACTTGGACTTTGTCAACTACACAATTAGTAAGTTATT
TGTATTTCTTACTATATTATATTACTGTTATTCTCCGTATCTTACACGCG
TCCAAAATTCTTTCTGACGcttatttcttttgttgtgGTGTGGGTGATAC
ACAGTTAATAACCACATTCTGTGTCCCTCAGATGTGTATCTGTTTATTAT
GATTTAATATTATTCTTTAAATGCAATGTTTACGCCTCAGTGATATGAAA
CCTTGGTGATCCCAGAAATAGCTCGGACACGTTACAATATTTTCATTGAG
TCACTAAGATTGTTCCTAAATTGAATGTCCCCGGAGTCAGATCAGGTCAG
ATACTGCATTATGAGATCCAAAGTGTCTGTTTTGTATATCCAAGTTGCTA
ATTCAAAGGGGttttaaattgagaaatgcAAGTCCAAGGGGGTCCAGGTC
TTGAGggtcaaaacaataaaatgaacCTCTTCTCTCAACAGGTTCTACAA
GTTTTCTTGTTGAATAGTTTGATCCTAGTTTCTTCTTGAgcatctttgaa
aaaaataatgtttttgggaaattttgcaaaatatttgCCCTCTGAGGGGA
ACTTATATGAGATCTTGTATCAGAATATTGATGATATCATTTTATCTCCA
GAACTCATATCAAGATGTCTCGCGGTATTACCGATAAGAAAGTATGTCTC
ATCGGGGCGGGCCCATGCGGTATCACCCTTCTCTCCGCCTTCAGTGACGC
CAAATCACGTGGTGAAGCTATTCCACAAGTAGTATGTTTCGAAAAACAAG
AACAAATCAGTGGTTTATGGAACTACACATGGCGTACTGGCCTCACAGCC
CATGGTGATGCTTTACCAAACAGTATGTACCGCCATCTCTGGTCAAACGG
ACCTAAAGAATGCTTAGAATTTCCAGACTACACTTTCATGGATCATTTCA
AGAAACCAATCCCTTCCTTCCCTCCAAGAGCTGTCCTTCAAGACTACATT
CTCGGAAAAGCCAACAAATACAACGTCGGACAATTCGTCAAAACAAGTCA
CGCCGTACGTCACGTCGAAGAAAAAGGTACACAATTCTTGGTCACTTATG
AAGATTTAGTCAACCACCAAACCTATAACGAAGTTTTTGATTATGTTGTA
TGCGCCACCGGTCATTACACCGTGCCACACTTCCCACAATATCCCggatt
agacaaatttgacgGCCGTGTCATGCACGCGCATGATTTCCGAAGTGCAg
aagaatttaaaaacaaaaccattgTCTTGATTGGATCCAGTTACTCTGCT
GAAGACATTTCATTGCAATTGTACAAATATGGTGCTAAGAAATGCATCAT
TTCATACCGTAAGAATCCTATGGGATACAAATGGCCTGCTGCTATCGTTG
AGAAACCAGCCCTTATCAAGGTAAAGGAATTTTCTAAGTTGACCTTCTCT
TCCATATAATCTTCCTTAGATAAAAATAATTAGTTAGTTATACAATATTG
CCTATGTACTGACACGACTTTATTGTCTGGTATCAGCTCCGACCTAAAAG
AAATGCCTTAAATTACGCTTTGATTTTATGGCTATGCATTGTAGGTTAGT
TTTACCTCTAAGCAGACAAAGCTCTCTAacaacaaaatgttttgaatcCT
TTTGACAAATACGATAAAGCTATTAAAAAATCATGATGCTCTAGGACCTC
TAGCTATAGATTAAAAAGTAGTTACGAAATTTATATAATCATTAACATTT
TCCTCTTTCTTCAAATATTGTAGGTTGAAGGAAGCAACAAATTCCATTTC
ACTGATGGTACAATTGAAgaagttgatgacgtcatcttttgTACCGGCTA
CCAGCATTATTTCCCATTCATGTCACAGAATTTGCGTTTATTCGCCACCA
ACATCATGTATCCTGACCATCTCTACAAGGGAATCATGTGGCATCGTAAT
CCAAATTGTTTGTACATGGGAATGTCTGATCAATATTACACTTACACAAT
GTTCGACACACAAGGTTAGCGAGAATTTCGACCCCAGCTGCCACACAACG
TGGGTTGTTCCAACGTTTATccaatgttcataacgtccatttaacgttag
atgaacgttgaaacgacgttgtgtgtcagctgggacgGTTACCAATACCA
TTAagagttcttccgtctcagacggattttcgtctcaGTGAAAGTATATA
AAGAATTTTCCTTCTCCAAATctctgcataattcaccaaaatttcaaaaa
tatgtgCTCATTTCCtttgtaaaatccattttccactGTCTTATGTAGAT
AACGAAAGCCATTACGTAGCGTCAGCTCGTCTTGACTGACAGCTTGAAAT
ACTATACTATTGTTTTAAGGAGAATTGAGACTGACATCCCGACTTCTTCA
AATATTTGCTTgataaaaaatctacaaaatcaaCCCCAATGCATCCAAAT
TATATCCACCTGTAAGCCGCTATCAGTTTGCGATTTGATTAATTAGCAAA
TCTAATAATCCCACATAATTCATATTTATCTTACTTTTTTTCCTAAAGGA
TTATGGATCCGCGATTACGTCATGGGTAAGATCAATATCGGAGACGTTGG
CAAACGTTCAGAACACATGAAACAATGGTACGATCGTGGCCAAGCACTCA
AGAATGCTGTCGAAGAAATCGAATTCCAACGTGATTATGTACATGATCTT
GTCGCAGTAAGTCTTCCATaacttttcattgaaaaataactaGTTACTTG
ttactagtttgagtaaagaaaacgatttaagttaatttcatactgtcaaa
gtttcatgccatccaggatggcaatcttcagtgaaatcttAGTTACTTGT
TCCTCCATGTATGTATGTAAACGAGTTGAAGTAAGAGGAAAGAAAAATCA
TGTGAGTAGGTAGTTGGTTAGTATTTTCATAGCCATACACTTAGAAACCC
TTAAAAGACAATTTCTCATCCTAAAGGACTTTCAAACCTGGCACTGAATA
CAGGGCTCTTAACATTTGGAACGGTTCCTTAANAGCGAAACGAAACCGTC
ACGTGAGAACATGGTCTTAACATTTGGAACGATTCCTTCTATTTTTCTTA
ATTATCGTCTTTTTCGTCTCTCCAGGACATGCCAAACTACCCAAAGAAAC
ATGACATCAATATCATTGCTGAACATTTGAAAGTATGGAAAGTGCACAAG
AGTGAAGATATCTTGACGTACCGAGATCACTCTTTCACCTCACCCAATGA
TGGTCATTTAGCCTGCAAACACGTTCTTCCATGGATCAAGTCCTTTGATG
ATTCACTTGAAGGGTATGTCAACCAAACCGAAAAATCACAACCTGCATAA
AAACCTTTGCCACCAGTTTACAtcaaaacgtcaaaacaacCTTAAAAGAA
CGTTGAAACAAGTTTGCGTGTCAACCGGGTTTTTGCGTCTGTACAGGATC
TAGGCTGCTTCGAATATTGATTATCTTGGTATTTATCAATTATGGAAGTG
AGTTTGATAGCTTATTAGTCGGTTTTAGTCCTTTCGGACCTACATGCGCT
TATGTCGGAATTATAATCGCATTGACTTTAAGAATTTAAATTCTTTATGA
CTGTTACCGTACACTTTACATTTTAAAGGGAAACTTTATGTTTGACAGGC
CCGCTAAGGAAATTGTAAATACTAAATATTATATTATGTATATCATGTCA
TGATATGTTTTTATATCTcaagaaacaattaaaaatgaaaaaaaaatctt
ccagTTGCAACAtaacaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043836XLOC_043836Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070378-exon-scaffold_55-1491911889:352270..352300TCONS_00070378-exon-scaffold_55-1491911889:352270..352300Clytia hemisphaericaexon
TCONS_00070378-exon-scaffold_55-1510915933:352270..352300TCONS_00070378-exon-scaffold_55-1510915933:352270..352300Clytia hemisphaericaexon
TCONS_00070378-exon-scaffold_55-1575043694:352270..352300TCONS_00070378-exon-scaffold_55-1575043694:352270..352300Clytia hemisphaericaexon
TCONS_00070378-exon-scaffold_55-1491911889:354274..354359TCONS_00070378-exon-scaffold_55-1491911889:354274..354359Clytia hemisphaericaexon
TCONS_00070378-exon-scaffold_55-1510915933:354274..354359TCONS_00070378-exon-scaffold_55-1510915933:354274..354359Clytia hemisphaericaexon
TCONS_00070378-exon-scaffold_55-1575043694:354274..354359TCONS_00070378-exon-scaffold_55-1575043694:354274..354359Clytia hemisphaericaexon
TCONS_00070378-exon-scaffold_55-1491911889:354971..355739TCONS_00070378-exon-scaffold_55-1491911889:354971..355739Clytia hemisphaericaexon
TCONS_00070378-exon-scaffold_55-1510915933:354971..355739TCONS_00070378-exon-scaffold_55-1510915933:354971..355739Clytia hemisphaericaexon
TCONS_00070378-exon-scaffold_55-1575043694:354971..355739TCONS_00070378-exon-scaffold_55-1575043694:354971..355739Clytia hemisphaericaexon
TCONS_00070378-exon-scaffold_55-1491911889:356093..356333TCONS_00070378-exon-scaffold_55-1491911889:356093..356333Clytia hemisphaericaexon
TCONS_00070378-exon-scaffold_55-1510915933:356093..356333TCONS_00070378-exon-scaffold_55-1510915933:356093..356333Clytia hemisphaericaexon
TCONS_00070378-exon-scaffold_55-1575043694:356093..356333TCONS_00070378-exon-scaffold_55-1575043694:356093..356333Clytia hemisphaericaexon
TCONS_00070378-exon-scaffold_55-1491911889:356868..357025TCONS_00070378-exon-scaffold_55-1491911889:356868..357025Clytia hemisphaericaexon
TCONS_00070378-exon-scaffold_55-1510915933:356868..357025TCONS_00070378-exon-scaffold_55-1510915933:356868..357025Clytia hemisphaericaexon
TCONS_00070378-exon-scaffold_55-1575043694:356868..357025TCONS_00070378-exon-scaffold_55-1575043694:356868..357025Clytia hemisphaericaexon
TCONS_00070378-exon-scaffold_55-1491911889:357445..358089TCONS_00070378-exon-scaffold_55-1491911889:357445..358089Clytia hemisphaericaexon
TCONS_00070378-exon-scaffold_55-1510915933:357445..358089TCONS_00070378-exon-scaffold_55-1510915933:357445..358089Clytia hemisphaericaexon
TCONS_00070378-exon-scaffold_55-1575043694:357445..358089TCONS_00070378-exon-scaffold_55-1575043694:357445..358089Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_55supercontigscaffold_55:352270..358089 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.036621	0.0510199	5.04112	2.24427e-06	23.5472	4.6411	65.2625	28.1729	3.40593	18.1442	5.7199	6.07069	20.391	3.12039	320.823	210.378	318.957	259.816	114.757	290.773	256.391	231.324	148.268	61.7334	2.28178	3.24459	91.8534	41.9113	322.15	394.946
Blast
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BLAST of TCONS_00070378 vs. Swiss-Prot (Human)
Match: FMO6 (Putative dimethylaniline monooxygenase [N-oxide-forming] 6 OS=Homo sapiens GN=FMO6P PE=5 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.100e-23
Identity = 70/231 (30.30%), Postives = 126/231 (54.55%), Query Frame = 2 
Query:  152 KKVCLIGAGPCGITLLSAFSDAKSRGEAIPQVVCFEKQEQISGLWNYTWRTGLTAHGDALPNSMYRHLWSNGPKECLEFPDYTFMDHFKKPIPSFPPRAVLQDYILGKANKYNVGQFVKTSHAVRHVEEKGTQFLVTYEDLV----NHQTYNEVFDYVVCATGHYTVPHFP--QYPGLDKFDGRVMHAHDFRSAEEFKNKTIVLIGSSYSAEDISLQLYKYGAKKCIISYR 826
            K+V +IGAG  G   L+A       G    +  CFE+ + + GLW ++       H +    S+Y+ +++N  KE + FPD+ + D +    P++   + LQ+YI   A K ++ ++++    V  ++ K   FLVT + +V    + +  + +FD V+  +GH+  P+ P   +PGLD+F G  +H+ D+++ E FK K +++IG   S  DI+++L +  A + IIS R
Sbjct:    3 KRVGIIGAGVSG---LAAIWCCLEEGL---EPTCFERSDDVGGLWKFS------DHTEEGRASIYQSVFTNSSKEMMCFPDFPYPDDY----PNYIHHSKLQEYIKTYAQKKDLLRYIQFETLVSGIK-KCPSFLVTGQWVVVTEKDGKQESTIFDAVMICSGHHVYPNLPTDSFPGLDQFRGNYLHSRDYKNPEAFKGKRVLVIGLGNSGSDIAVELSRL-ATQVIISTR 215
The following BLAST results are available for this feature:
BLAST of TCONS_00070378 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FMO61.100e-2330.30Putative dimethylaniline monooxygenase [N-oxide-fo... [more]
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