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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070372 ID=TCONS_00070372|Name=TCONS_00070372|organism=Clytia hemisphaerica|type=transcript|length=2892bpRun BLAST on NCBI protein sequence of TCONS_00070372-protein >TCONS_00070372-protein ID=TCONS_00070372-protein|Name=TCONS_00070372-protein|organism=Clytia hemisphaerica|type=polypeptide|length=579bp MGKLKHKFNAKARQTSQQDTPLAEKKKIKELQSIVQIEDDESYGDTNSNLRun BLAST on NCBI transcript from alignment at scaffold_55:297884..310211+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070372 ID=TCONS_00070372|Name=TCONS_00070372|organism=Clytia hemisphaerica|type=transcript|length=12328bp|location=Sequence derived from alignment at scaffold_55:297884..310211+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_55:297884..310211+ >TCONS_00070372 ID=TCONS_00070372|Name=TCONS_00070372|organism=Clytia hemisphaerica|type=CDS|length=19140bp|location=Sequence derived from alignment at scaffold_55:297884..310211+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00070372 vs. Swiss-Prot (Human)
Match: DHX37 (Probable ATP-dependent RNA helicase DHX37 OS=Homo sapiens GN=DHX37 PE=1 SV=1) HSP 1 Score: 392.119 bits (1006), Expect = 4.479e-118 Identity = 183/274 (66.79%), Postives = 225/274 (82.12%), Query Frame = 3
Query: 813 KPSVYIQIDRTPEIQTARLMLPICGEEQIIMETIQENDVTLICGSTGSGKTTQVPQFLYEAGYGSHSSKPGMIGVTEPRRVAAVSMSKRVAEEMNMTTRKVSYQIRYEGNSTDETVVKFMTDGVLLKEMEKDFLLSKFSCIIIDEAHERSVYTDILIGLLSRLVPLRRKQNNPLKLIIMSATLRIEDFSENKRLFPLSPPVISVDGRQFPVTIHFNKKTS-DDYVTDAFKKVCKIHRTLKLDGGILVFLTGQNEVMALCRKLTRAFPKKKGNPE 1631
KP+V+I ++R+PE+Q RL LPI EEQ+IME + E+ + ++CG TGSGKTTQVPQFLYEAG+ S S +IGVTEPRRVAAV+MS+RVA+EMN++ R VSYQIRYEGN T+ET +KFMTDGVLLKE++KDFLL ++ +IIDEAHERSVYTDILIGLLSR+V LR K+N PLKL+IMSATLR+EDF++N RLF PPVI V+ RQFPVT+HFNK+T +DY + F+KVCKIHR L GGILVFLTGQ EV ALCR+L +AFP + P+
Sbjct: 232 KPAVFIPVNRSPEMQEERLKLPILSEEQVIMEAVAEHPIVIVCGETGSGKTTQVPQFLYEAGFSSEDS---IIGVTEPRRVAAVAMSQRVAKEMNLSQRVVSYQIRYEGNVTEETRIKFMTDGVLLKEIQKDFLLLRYKVVIIDEAHERSVYTDILIGLLSRIVTLRAKRNLPLKLLIMSATLRVEDFTQNPRLFAKPPPVIKVESRQFPVTVHFNKRTPLEDYSGECFRKVCKIHRMLP-AGGILVFLTGQAEVHALCRRLRKAFPPSRARPQ 501 The following BLAST results are available for this feature:
BLAST of TCONS_00070372 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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