TCONS_00070372-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00070372-protein
Unique NameTCONS_00070372-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length579

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00070372-protein ID=TCONS_00070372-protein|Name=TCONS_00070372-protein|organism=Clytia hemisphaerica|type=polypeptide|length=579bp
MGKLKHKFNAKARQTSQQDTPLAEKKKIKELQSIVQIEDDESYGDTNSNL
LVTESKKLKTKKDNFVGKQKEKKVLSKKQKKRLQQIVDQKKKKEKRAEVL
KSLAENQVSKEELSQYKSSTNLGNKQVPNKRKASELKTEETVSTVAKRKR
NRKNKKKDSNNQPITEGVVNLQDEDPSEESDMSSSESENESESEEENQEI
EDQQFTEVSTSTDENDQREQLKETGKAENNVKEAQKTTIVDKEESSKPIT
ETAVKEANKEAEQPKKKASKPSVYIQIDRTPEIQTARLMLPICGEEQIIM
ETIQENDVTLICGSTGSGKTTQVPQFLYEAGYGSHSSKPGMIGVTEPRRV
AAVSMSKRVAEEMNMTTRKVSYQIRYEGNSTDETVVKFMTDGVLLKEMEK
DFLLSKFSCIIIDEAHERSVYTDILIGLLSRLVPLRRKQNNPLKLIIMSA
TLRIEDFSENKRLFPLSPPVISVDGRQFPVTIHFNKKTSDDYVTDAFKKV
CKIHRTLKLDGGILVFLTGQNEVMALCRKLTRAFPKKKGNPEDGKPATKM
KKTKDEKKKIDLDKVSMPLNRLQIYPWSF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_043833XLOC_043833Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00070372TCONS_00070372Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014001Helicase_ATP-bd
IPR011545DEAD/DEAH_box_helicase_dom
IPR002464DNA/RNA_helicase_DEAH_CS
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 76..103
NoneNo IPR availableGENE3D3.40.50.300coord: 477..571
e-value: 2.0E-12
score: 46.5
NoneNo IPR availableGENE3D3.40.50.300coord: 177..476
e-value: 1.1E-28
score: 99.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..270
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 535..557
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableCDDcd00046DEXDccoord: 308..452
e-value: 1.87609E-27
score: 107.038
IPR014001Helicase superfamily 1/2, ATP-binding domainSMARTSM00487ultradead3coord: 288..483
e-value: 1.3E-24
score: 97.8
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 300..470
score: 22.009
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 299..456
e-value: 2.8E-10
score: 40.1
IPR002464DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved sitePROSITEPS00690DEAH_ATP_HELICASEcoord: 408..417
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 294..531

Blast
[Close]
BLAST of TCONS_00070372-protein vs. Swiss-Prot (Human)
Match: DHX37 (Probable ATP-dependent RNA helicase DHX37 OS=Homo sapiens GN=DHX37 PE=1 SV=1)

HSP 1 Score: 394.815 bits (1013), Expect = 7.504e-125
Identity = 183/275 (66.55%), Postives = 226/275 (82.18%), Query Frame = 0 
Query:  270 KPSVYIQIDRTPEIQTARLMLPICGEEQIIMETIQENDVTLICGSTGSGKTTQVPQFLYEAGYGSHSSKPGMIGVTEPRRVAAVSMSKRVAEEMNMTTRKVSYQIRYEGNSTDETVVKFMTDGVLLKEMEKDFLLSKFSCIIIDEAHERSVYTDILIGLLSRLVPLRRKQNNPLKLIIMSATLRIEDFSENKRLFPLSPPVISVDGRQFPVTIHFNKKTS-DDYVTDAFKKVCKIHRTLKLDGGILVFLTGQNEVMALCRKLTRAFPKKKGNPED 543
            KP+V+I ++R+PE+Q  RL LPI  EEQ+IME + E+ + ++CG TGSGKTTQVPQFLYEAG+ S  S   +IGVTEPRRVAAV+MS+RVA+EMN++ R VSYQIRYEGN T+ET +KFMTDGVLLKE++KDFLL ++  +IIDEAHERSVYTDILIGLLSR+V LR K+N PLKL+IMSATLR+EDF++N RLF   PPVI V+ RQFPVT+HFNK+T  +DY  + F+KVCKIHR L   GGILVFLTGQ EV ALCR+L +AFP  +  P++
Sbjct:  232 KPAVFIPVNRSPEMQEERLKLPILSEEQVIMEAVAEHPIVIVCGETGSGKTTQVPQFLYEAGFSSEDS---IIGVTEPRRVAAVAMSQRVAKEMNLSQRVVSYQIRYEGNVTEETRIKFMTDGVLLKEIQKDFLLLRYKVVIIDEAHERSVYTDILIGLLSRIVTLRAKRNLPLKLLIMSATLRVEDFTQNPRLFAKPPPVIKVESRQFPVTVHFNKRTPLEDYSGECFRKVCKIHRMLP-AGGILVFLTGQAEVHALCRRLRKAFPPSRARPQE 502
The following BLAST results are available for this feature:
BLAST of TCONS_00070372-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DHX377.504e-12566.55Probable ATP-dependent RNA helicase DHX37 OS=Homo ... [more]
back to top