TCONS_00070249 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070249
Unique NameTCONS_00070249
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1935

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070249 ID=TCONS_00070249|Name=TCONS_00070249|organism=Clytia hemisphaerica|type=transcript|length=1935bp
CGGCGAGAGGTCGTCAACTTTATGATATTGTCAAGTCTAAATATTATAAA
CGGTTATTTTGTAAAGGGCCACCTGCTGGTCTTACAGTATTGgaagtaaa
acattttttttcttataatactTCAACTATCATCCACTCTGGATTAAGAT
ACAGTAAGGCACATGaataaaaatcatttcaaattttagaaatattttga
tcaAGGGGAAGCTCACCGTACTTGacaatttcttaaattttgaaaaaaag
aaatcttagAGCGATTACGGATATTAGTAAGAAAAACTTGAATCTATAAA
CGCCTTTGAGCTTTCAAAAGCAGTCACATACAAAGGAAAGAGAATGGTGG
GGAGGCAAGGCTAAAGAAATGTAAGGATCACTTGCAGAGGCTATTGTAAA
CACACAGGAAACTCTCGAAagatattttagaatttatttttaaatggtAA
TGGTTGTATTGAGTTGACACGTCAATAAAAATCAAATCCGCATTTTGAAC
TGGTGCTGATGTTAATTGTTAtcaattcctttgtttaaaCTTCAAATagg
aaattgaaaatatttgatgtttgtcatcatcatcaaaggtggaaaaattt
agaaaattaaattattccTGAACGGTGGACCGGTAAGAACACTAATCCGA
AATCAAGACATAGTTATAAACAGTACACAATTTTATGATGTCTTtcttga
ttgaaaatttgttgaaagataagAGCAGTGAAAGGAAAGATCACGATAAA
AGCAGAGATCAACTCACACCACCTGCTACTCCAACTAAAGATGATTCTTC
AAGACCGAAGCTAGAAGattTATCAGACATCGAACTTTCCAGTGTGGACG
AAGATGATTTACAAGACTCATATTCAAAGAAACGAAGGATACTTTTCACA
CGTCAACAGACATGGGAACTGGAAAGAATTTTTCGACAACAACCTTACTT
ATCTTCACCAGAACGTGAAGTATTagcaaagaaaatcaacttgACTCCAA
CGCAAATTAAGATATGGTTTCAGAATCATAGatacaaaatgaagaaataC
ATGAAGGACATGATTCAACAAGCTGAATATGAATGGCAAAAACAGAAGAA
CGATCGTTACAATCCAATGCACTCACCACATCGGAAACTCTCAGCTTCAA
GTCCTCCATATCACAACCCTCACAGATCCTCATACTATAGTCGCCCATCA
TATCTATCAACTCCACCCTCCTTTCATCGCCCCCGCCCTTATCCACCAAG
AAGCAGTATCTCAGATTACACGCCCTCCTCGTCAATATCCAGTTATCCAT
CAACGCCAAGCACGCCCCAAGAATCACCCCGTAAATCACCCTATTGGTCT
TCAAGCAACAGTTGCCCGCCCTCTTTATCACTTTCTACTTCTACTGATAA
ACTTGTTTTCAACTTCAAGAAGGATGACCTATACAAACATTCACCTACTA
ATTCGTTGAGATCTTCAGGGCATTCAAGTTTTGGACCTCACGaacattta
aagaaaaaatggtgTAGTTGCTGTCCTCCAAATATAGAGCGTCCATGAAA
TGCTGAGACAGCAAAAAATTATCAGAATTAAAAACGAAAATATTTCGCCT
GTTTTACCCCAAAAATTATTTGCGCTGTGTCAGCAGAAAAATAGGCTTTA
TAAATAAGTTTTCAAcgtgttttaacgttttttgttGCAGTTTTTTTAAA
ATTGCGTTAAATCATATTGTTTTGTATTTAAAAGTAGAGTTTATATGTAG
CAAATATATTTATGTTGTgcaatatttttaaagaaaaatgaatattaaCT
AAATACAATAACATATCATAAGTAAATAATATAATATTGAGTAAAAATAT
AGTCTACATCTACCATATGTGAGAATATGTTATATTTAGAATATCCTTTT
GTTGTAAATAGTGTATATAGTATACAAAATAAAAC
Run BLAST on NCBI

protein sequence of NK2d homeodomain transcription factor protein

>TCONS_00070249-protein ID=TCONS_00070249-protein|Name=NK2d homeodomain transcription factor protein|organism=Clytia hemisphaerica|type=polypeptide|length=287bp
MMSFLIENLLKDKSSERKDHDKSRDQLTPPATPTKDDSSRPKLEDLSDIE
LSSVDEDDLQDSYSKKRRILFTRQQTWELERIFRQQPYLSSPEREVLAKK
INLTPTQIKIWFQNHRYKMKKYMKDMIQQAEYEWQKQKNDRYNPMHSPHR
KLSASSPPYHNPHRSSYYSRPSYLSTPPSFHRPRPYPPRSSISDYTPSSS
ISSYPSTPSTPQESPRKSPYWSSSNSCPPSLSLSTSTDKLVFNFKKDDLY
KHSPTNSLRSSGHSSFGPHEHLKKKWCSCCPPNIERP
Run BLAST on NCBI

transcript from alignment at scaffold_516:397097..404109-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070249 ID=TCONS_00070249|Name=TCONS_00070249|organism=Clytia hemisphaerica|type=transcript|length=7013bp|location=Sequence derived from alignment at scaffold_516:397097..404109- (Clytia hemisphaerica)
CGGCGAGAGGTCGTCAACTTTATGATATTGTCAAGTCTAAATATTATAAA
CGGTTATTTTGTAAAGGGCCACCTGCTGGTCTTACAGTATTGGAAGTAAA
ACATTTTTTTTCTTATAATACTTCAACTATCATCCACTCTGGATTAAGAT
ACAGTAAGGCACATGAATAAAAATCATTTCAAATTTTAGAAATATTTTGA
TCAAGGGGAAGCTCACCGTACTTGACAATTTCTTAAATTTTGAAAAAAAG
AAATCTTAGAGCGATTACGGATATTAGTAAGAAAAACTTGAATCTATAAA
CGCCTTTGAGCTTTCAAAAGCAGTCACATACAAAGGAAAGAGAATGGTGG
GGAGGCAAGGCTAAAGAAATGTAAGGATCACTTGCAGAGGCTATTGTAAA
CACACAGGAAACTCTCGAAAGATATTTTAGAATTTATTTTTAAATGGTAA
TGGTTGTATTGAGTTGACACGTCAATAAAAATCAAATCCGCATTTTGAAC
TGGTGCTGATGTTAATTGTTATCAATTCCTTTGTTTAAACTTCAAATAGG
AAATTGAAAATATTTGATGTTTGTCATCATCATCAAAGGTGGAAAAATTT
AGAAAATTAAATTATTCCTGAACGGTGGACCGGTAAGAACACTAATCCGA
AATCAAGACATAGTTATAAACAGTACACAATTTTATGATGTCTTTCTTGA
TTGAAAATTTGTTGAAAGATAAGAGCAGTGAAAGGAAAGATCACGATAAA
AGCAGAGATCAACTCACACCACCTGCTACTCCAACTAAAGATGATTCTTC
AAGACCGAAGCTAGAAGGTAAGTTTTGTGACTTTTGTGACTTTTTTTGAC
GAAATTGGTTTTTAGAATGCATAATGGTTCTCGAAATTTGTTCTCTAAAT
GCATTTTGAANCAAAAGTTGAAGATTAATAAAAAGTCTACTGTCTACCTA
CCCACTTGTTTTTTTAAAAAACTTTCCATTTATTAGCAGTTTACTCTGAT
ATTTTAATGAAATTTTACTCTATTTCATTGAATTTTGTTTTGTATAGGGC
TTAGAACAAGTGCCAAGGAAATCAGTGATCAACGCTTGCCAATTTTTCTG
ATACAGTCTCCTCTTGAAAAAATTGTCAACAACTTTAATCGAGTTAACCC
TGTATCCTTTTTAAAACTTTAAAAGTCGGCTTCTGATTGGTTTATAGAAC
TATTGATAGGACGTTATTGTCCAATAGGATTGTATCTTGCTTCATTCCCA
GTCATTCACAAGAAAAGTTTGACGTAAGTGTGAAAAACATCCTAATCCAA
TTTTTGCGATAAAAATCTAGCGCATTCTGATAACTGAAAAGACAAAAATC
AACTTAATTACTCATTTAATCTTACTTTGTTTTTCTGAAACAATTTCAAA
AATTTTCTGACCTCTAGCAAAACTTTGATAAAGGACTGGGCTCGAATCAA
GGTGTGTAATTTTTAAAAGAAAGTAGAAACAAAAATTAAAAGTAAAAATT
GAATGGAATAAAAAAGTTACAAAGTTATTTCTTGAAAAACAATGAATAAA
AAAATTAACAGGAAATCTTAACATTAATAACAATTAATTTTATTATCTGA
TATATAAGATAGTGAAACAGATAGCGGCGAGAGGTCGTCAACTTTATGAT
ATTGTCAAGTCTAAATATTATAAACGGTTATTTTGTAAAGGGCCACCTGC
TGGTCTTACAGTATTGGAAGTAAAACATTTTTTTTCTTATAATACTTCAA
CTATCATCCACTCTGGATTAAGATACAGTAAGGCACATGAATAAAAATCA
TTTCAAATTTTAGAAATATTTTGATCAAGGGGAAGCTCACCGTACTTGAC
AATTTCTTAAATTTTGAAAAAAAGAAATCTTAGAGCGATTACGGATATTA
GTAAGAAAAACTTGAATCTATAAACGCCTTTGAGCTTTCAAAAGCAGTCA
CATACAAAGGAAAGAGAATGGTGGGGAGGCAAGGCTAAAGAAATGTAAGG
ATCACTTGCAGAGGCTATTGTAAACACACAGGAAACTCTCGAAAGATATT
TTAGAATTTATTTTTAAATGGTAATGGTTGTATTGAGTTGACACGTCAAT
AAAAATCAAATCCGCATTTTGAACTGGTGCTGATGTTAATTGTTATCAAT
TCCTTTGTTTAAACTTCAAATAGGAAATTGAAAATATTTGATGTTTGTCA
TCATCATCAAAGGTGGAAAAATTTAGAAAATTAAATTATTCCTGAACGGT
GGACCGGTAAGAACACTAATCCGAAATCAAGACATAGTTATAAACAGTAC
ACAATTTTATGATGTCTTTCTTGATTGAAAATTTGTTGAAAGATAAGAGC
AGTGAAAGGAAAGATCACGATAAAAGCAGAGATCAACTCACACCACCTGC
TACTCCAACTAAAGATGATTCTTCAAGACCGAAGCTAGAAGGTAAGTTTT
GTGACTTTTGTGACTTTTTTTGACGAAATTGGTTTTTAGAATGCATAATG
GTTCTCGAAATTTGTTCTCTAAATGCATTTTGAANATTAAATCAAAAGTT
GAAGATTAATAAAAAATCTACTGTCTACCTACCCACTTGTTTTTTTCAAA
AACTTTCCATTTATCAGCAGTTTACTCTGATATTTTAATGAAATTTTACT
CTATTTCATTGAATTTTGTTTTGTATAGGGATTAGTACAAGTGCCAAGGA
AATCAGTGATCAACGCTTGCCAATTTTTCTGATACACCAGTCTCCTCTTG
AAAAAATTGTCAACAACTTTAATCGAGTTAACCCTGTATCACTTTTTAAA
ACTTTAAAAGTCGGCTTCTGATTGGTTTATAGAACTATTGATAGGACGTG
ATTGTCCAATAGGATTGTATCTTGCTTCATTCCCAGTCATTCACAAGAAA
AGTTTGACGTAAGTGTGAAAAACATCCTAATCCAATTTTTGCGATAAAAA
ATCTAGCGCATCCTGATAATTGAAAAGACAAAAATCAACTTAATTACTCA
TTTAATTTCAAAAATTTTCTGACCTCTAGCAAAACTTTGATAAAGGACTG
GGCTCGAATCAAGGTGTGTAATTTTTAAAAGAAAGTAGAAACAAAAATTA
AAAGTAAAAATTGAATGGAATAAAAAAGTTACAAAGTTATTTCTTGAAAA
ACAATGAATAAAAAAATTAACAGGAAATCTTAACATTAATAACAATTAAT
TTTATTATCTGATATATAAGATAGTGAAACAGATAGCGGCGAGAGGTCGT
CAACTTTATGATATTGTCAAGTCTAAATATTATAAACGGTTATTTTGTAA
AGGGCCACCTGCTGGTCTTACAGTATTGGAAGTAAAACATTTTTTTTCTT
ATAATACTTCAACTATCATCCACTCTGGATTAAGATACAGTAAGGCACAT
GAATAAAAATCATTTCAAATTTTAGAAATATTTTGATCAAGGGGAAGCTC
ACCGTACTTGACAATTTCTTAAATTTTGAAAAAAAGAAATCTTAGAGCGA
TTACGGATATTAGTAAGAAAAACTTGAATCTATAAACGCCTTTGAGCTTT
CAAAAGCAGTCACATACAAAGGAAAGAGAATGGTGGGGAGGCAAGGCTAA
AGAAATGTAAGGATCACTTGCAGAGGCTATTGTAAACACACAGGAAACTC
TCGAAAGATATTTTAGAATTTATTTTTAAATGGTAATGGTTGTATTGAGT
TGACACGTCAATAAAAATCAAATCCGCATTTTGAACTGGTGCTGATGTTA
ATTGTTATCAATTCCTTTGTTTAAACTTCAAATAGGAAATTGAAAATATT
TGATGTTTGTCATCATCATCAAAGGTGGAAAAATTTAGAAAATTAAATTA
TTCCTGAACGGTGGACCGGTAAGAACACTAATCCGAAATCAAGACATAGT
TATAAACAGTACACAATTTTATGATGTCTTTCTTGATTGAAAATTTGTTG
AAAGATAAGAGCAGTGAAAGGAAAGATCACGATAAAAGCAGAGATCAACT
CACACCACCTGCTACTCCAACTAAAGATGATTCTTCAAGACCGAAGCTAG
AAGGTAAGTTTTGTGACTTNTCTAGCGCATTCTGATAACTGAAAAGACAA
AAATCAACTTAATTACTCATTTAATCTTACTTTGTTTTTCTGAAACAATT
TCAAAAATTTTCTGACCTCTAGCAAAACTTTGATAAAGGACTGGGCTCGA
ATCAAGGTGTGTAATTTTTAAAAGAAAGTAGAAACAAAAATTAAAAGTAA
AAATTGAATGGAATAAAAAAGTTACAAAGTTATTTCTTGAAAAACAATGA
ATAAAAAAATTAACAGGANCATTCTCTACCGATATATGCTTCAACATCAG
AGTCCTATAAAAATTGTACTGTCAATGATGGAGAATTTAAAAACGAATGC
GGGTTCAGCCTGCACATTGATAGTTGTGGTAGCAAGAATTTTTTGGTTTC
ATTTTTCTGAAGTATAGATACTAACAAGAAGGAAAATATCAGTATATCAT
TACACCATTCACCTTTTCGATTTTCATACAAAGGAATACCCTTTCTTCGC
TTTTTATGATTCTTATAGCACTCACGATTGTATCACGTCCATAAGTAAAA
TCAAAAAGTGGTGCAAGTGACTCTGGTTAGTTTGCGAGATTGAAAATTAC
AGAGTTCTAAATTCTTAATATTTTTAAATTTAGATTTATCAGACATCGAA
CTTTCCAGTGTGGACGAAGATGATTTACAAGACTCATATTCAAAGAAACG
AAGGATACTTTTCACACGTCAACAGACATGGGAACTGGAAAGAATTTTTC
GACAACAACCTTACTTATCTTCACCAGAACGTGAAGTATTAGCAAAGAAA
ATCAACTTGACTCCAACGCAAATTAAGATATGGTTTCAGAATCATAGGTA
TGTAGCGTCAGGATTTAACTTCTCGTTGTTGGTTTCCAGTTGGGCCCACA
GCGTTGTTTCAACATTCATCTAACGTTGGACGGGGTTACAGATATTAGAT
AGATTTTGATGGTAATATCAATCTCCATCAAGTTTCAGTCCGTTATTTTT
ACCCCAACTGACTGAAAAAATCCTACTGGATCTGTGAAAAGGGGGTGTAT
TAATATAGTATGTATTAATTCAAATTATAAATTTTTATATTTGAAAATTT
TAAGAAATTAAATCAATTATTTTCAAATGATGAATAATTTTTCTTAATAT
TTTTCATAGATACAAAATGAAGAAATACATGAAGGACATGATTCAACAAG
CTGAATATGAATGGCAAAAACAGAAGAACGATCGTTACAATCCAATGCAC
TCACCACATCGGAAACTCTCAGCTTCAAGTCCTCCATATCACAACCCTCA
CAGATCCTCATACTATAGTCGCCCATCATATCTATCAACTCCACCCTCCT
TTCATCGCCCCCGCCCTTATCCACCAAGAAGCAGTATCTCAGATTACACG
CCCTCCTCGTCAATATCCAGTTATCCATCAACGCCAAGCACGCCCCAAGA
ATCGCCCCGTAAATCACCCTATTGGTCTTCAAGCAGCAGTTGCCCGCCCT
CTTTATCACTTTCTACTTCTACTGATAAACTTGTTTTCAACTTNGGCGTC
AGGATTTAACTTCTCGTTGTTGGTTTCCAGTTGGGCACACAGCGTTGTTT
CAACATTCATCTAACGTTGGACGGGGTTACAGATATTAGATAGATTTTGA
CACTTGTGTCAGTTCGGTCAATGGATGATATTGACTTGAAAATGACATTC
TAACAACCCCCAGTGGAAAATTGTACTCGAATTTTTGTTTCTACTGAAAT
TTTCGTCACTAAACCAAACGTCACTGTAAATATTATGCTTTTTTTCTCAC
CCCTACTGAATTCTCTGACTTGGAAACAATGGAATTTAAATTCCCAGTCA
TAAAAGATATGGTAATATCAATCCCCATTAAGTCTCAGTCCGTTATTTTT
ACCCCAACTGACTGAAAAAATCTTACTGGATCTGTGAAAAGGGGGTGTAT
TAATATAGTATGTATTAATTCAAATTATAAATTTTTATATTTGAAAATTT
TGAAAAATTAAATCAATTATTTTCAAATGATGAATAATTTTTCTTAATAT
TTTTCATAGATACAAAATGAAGAAATACATGAAGGACATGATTCAACAAG
CTGAATATGAATGGCAAAAACAGAAGAACGATCGTTACAATCCAATGCAC
TCACCACATCGGAAACTCTCAGCTTCAAGTCCTCCATATCACAACCCTCA
CAGATCCTCATACTATAGTCGCCCATCATATCTATCAACTCCACCCTCCT
TTCATCGCCCCCGCCCTTATCCACCAAGAAGCAGTATCTCAGATTACACG
CCCTCCTCGTCAATATCCAGTTATCCATCAACGCCAAGCACGCCCCAAGA
ATCACCCCGTAAATCACCCTATTGGTCTTCAAGCAACAGTTGCCCGCCCT
CTTTATCACTTTCTACTTCTACTGATAAACTTGTTTTCAACTTCAAGAAG
GATGACCTATACAAACATTCACCTACTAATTCGTTGAGATCTTCAGGGCA
TTCAAGTTTTGGACCTCACGAACATTTAAAGAAAAAATGGTGTAGTTGCT
GTCCTCCAAATATAGAGCGTCCATGAAATGCTGAGACAGCAAAAAATTAT
CAGAATTAAAAACGAAAATATTTCGCCTGTTTTACCCCAAAAATTATTTG
CGCTGTGTCAGCAGAAAAATAGGCTTTATAAATAAGTTTTCAACGTGTTT
TAACGTTTTTTGTTGCAGTTTTTTTAAAATTGCGTTAAATCATATTGTTT
TGTATTTAAAAGTAGAGTTTATATGTAGCAAATATATTTATGTTGTGCAA
TATTTTTAAAGAAAAATGAATATTAACTAAATACAATAACATATCATAAG
TAAATAATATAATATTGAGTAAAAATATAGTCTACATCTACCATATGTGA
GAATATGTTATATTTAGAATATCCTTTTGTTGTAAATAGTGTATATAGTA
TACAAAATAAAAC

Coding sequence (CDS) from alignment at scaffold_516:397097..404109-

>TCONS_00070249 ID=TCONS_00070249|Name=TCONS_00070249|organism=Clytia hemisphaerica|type=CDS|length=2592bp|location=Sequence derived from alignment at scaffold_516:397097..404109- (Clytia hemisphaerica)
ATACAAAATGAAGAAATACATGAAGGACATGATTCAACAAGCTGAATATG
AATGGCAAAAACAGAAGAACGATCGTTACAATCCAATGCACTCACCACAT
CGGAAACTCTCAGCTTCAAGTCCTCCATATCACAACCCTCACAGATCCTC
ATACTATAGTCGCCCATCATATCTATCAACTCCACCCTCCTTTCATCGCC
CCCGCCCTTATCCACCAAGAAGCAGTATCTCAGATTACACGCCCTCCTCG
TCAATATCCAGTTATCCATCAACGCCAAGCACGCCCCAAGAATCACCCCG
TAAATCACCCTATTGGTCTTCAAGCAACAGTTGCCCGCCCTCTTTATCAC
TTTCTACTTCTACTGATAAACTTGTTTTCAACTTCAAGAAGGATGACCTA
TACAAACATTCACCTACTAATTCGTTGAGATCTTCAGGGCATTCAAGTTT
TGGACCTCACGAACATTTAAAGAAAAAATGGTGTAGTTGCTGTCCTCCAA
ATATAGAGCGTCCATGAATTTATCAGACATCGAACTTTCCAGTGTGGACG
AAGATGATTTACAAGACTCATATTCAAAGAAACGAAGGATACTTTTCACA
CGTCAACAGACATGGGAACTGGAAAGAATTTTTCGACAACAACCTTACTT
ATCTTCACCAGAACGTGAAGTATTAGCAAAGAAAATCAACTTGACTCCAA
CGCAAATTAAGATATGGTTTCAGAATCATAGATGATGTCTTTCTTGATTG
AAAATTTGTTGAAAGATAAGAGCAGTGAAAGGAAAGATCACGATAAAAGC
AGAGATCAACTCACACCACCTGCTACTCCAACTAAAGATGATTCTTCAAG
ACCGAAGCTAGAAGATACAAAATGAAGAAATACATGAAGGACATGATTCA
ACAAGCTGAATATGAATGGCAAAAACAGAAGAACGATCGTTACAATCCAA
TGCACTCACCACATCGGAAACTCTCAGCTTCAAGTCCTCCATATCACAAC
CCTCACAGATCCTCATACTATAGTCGCCCATCATATCTATCAACTCCACC
CTCCTTTCATCGCCCCCGCCCTTATCCACCAAGAAGCAGTATCTCAGATT
ACACGCCCTCCTCGTCAATATCCAGTTATCCATCAACGCCAAGCACGCCC
CAAGAATCACCCCGTAAATCACCCTATTGGTCTTCAAGCAACAGTTGCCC
GCCCTCTTTATCACTTTCTACTTCTACTGATAAACTTGTTTTCAACTTCA
AGAAGGATGACCTATACAAACATTCACCTACTAATTCGTTGAGATCTTCA
GGGCATTCAAGTTTTGGACCTCACGAACATTTAAAGAAAAAATGGTGTAG
TTGCTGTCCTCCAAATATAGAGCGTCCATGAATTTATCAGACATCGAACT
TTCCAGTGTGGACGAAGATGATTTACAAGACTCATATTCAAAGAAACGAA
GGATACTTTTCACACGTCAACAGACATGGGAACTGGAAAGAATTTTTCGA
CAACAACCTTACTTATCTTCACCAGAACGTGAAGTATTAGCAAAGAAAAT
CAACTTGACTCCAACGCAAATTAAGATATGGTTTCAGAATCATAGATGAT
GTCTTTCTTGATTGAAAATTTGTTGAAAGATAAGAGCAGTGAAAGGAAAG
ATCACGATAAAAGCAGAGATCAACTCACACCACCTGCTACTCCAACTAAA
GATGATTCTTCAAGACCGAAGCTAGAAGATACAAAATGAAGAAATACATG
AAGGACATGATTCAACAAGCTGAATATGAATGGCAAAAACAGAAGAACGA
TCGTTACAATCCAATGCACTCACCACATCGGAAACTCTCAGCTTCAAGTC
CTCCATATCACAACCCTCACAGATCCTCATACTATAGTCGCCCATCATAT
CTATCAACTCCACCCTCCTTTCATCGCCCCCGCCCTTATCCACCAAGAAG
CAGTATCTCAGATTACACGCCCTCCTCGTCAATATCCAGTTATCCATCAA
CGCCAAGCACGCCCCAAGAATCACCCCGTAAATCACCCTATTGGTCTTCA
AGCAACAGTTGCCCGCCCTCTTTATCACTTTCTACTTCTACTGATAAACT
TGTTTTCAACTTCAAGAAGGATGACCTATACAAACATTCACCTACTAATT
CGTTGAGATCTTCAGGGCATTCAAGTTTTGGACCTCACGAACATTTAAAG
AAAAAATGGTGTAGTTGCTGTCCTCCAAATATAGAGCGTCCATGAATTTA
TCAGACATCGAACTTTCCAGTGTGGACGAAGATGATTTACAAGACTCATA
TTCAAAGAAACGAAGGATACTTTTCACACGTCAACAGACATGGGAACTGG
AAAGAATTTTTCGACAACAACCTTACTTATCTTCACCAGAACGTGAAGTA
TTAGCAAAGAAAATCAACTTGACTCCAACGCAAATTAAGATATGGTTTCA
GAATCATAGATGATGTCTTTCTTGATTGAAAATTTGTTGAAAGATAAGAG
CAGTGAAAGGAAAGATCACGATAAAAGCAGAGATCAACTCACACCACCTG
CTACTCCAACTAAAGATGATTCTTCAAGACCGAAGCTAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043740XLOC_043740Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
NK2d homeodomain transcription factor proteinTCONS_00070249-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070249-exon-scaffold_516-1575043694:403293..404109TCONS_00070249-exon-scaffold_516-1575043694:403293..404109Clytia hemisphaericaexon
TCONS_00070249-exon-scaffold_516-1575043694:399213..399426TCONS_00070249-exon-scaffold_516-1575043694:399213..399426Clytia hemisphaericaexon
TCONS_00070249-exon-scaffold_516-1575043694:397097..398000TCONS_00070249-exon-scaffold_516-1575043694:397097..398000Clytia hemisphaericaexon
TCONS_00070249-exon-scaffold_516-1510915933:403293..404109TCONS_00070249-exon-scaffold_516-1510915933:403293..404109Clytia hemisphaericaexon
TCONS_00070249-exon-scaffold_516-1510915933:399213..399426TCONS_00070249-exon-scaffold_516-1510915933:399213..399426Clytia hemisphaericaexon
TCONS_00070249-exon-scaffold_516-1510915933:397097..398000TCONS_00070249-exon-scaffold_516-1510915933:397097..398000Clytia hemisphaericaexon
TCONS_00070249-exon-scaffold_516-1491911889:403293..404109TCONS_00070249-exon-scaffold_516-1491911889:403293..404109Clytia hemisphaericaexon
TCONS_00070249-exon-scaffold_516-1491911889:399213..399426TCONS_00070249-exon-scaffold_516-1491911889:399213..399426Clytia hemisphaericaexon
TCONS_00070249-exon-scaffold_516-1491911889:397097..398000TCONS_00070249-exon-scaffold_516-1491911889:397097..398000Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_516supercontigscaffold_516:397097..404109 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	2.59406	2.85285	1.47192	1.5396	0.471909	1.58031	0	0	0	0	0.55364	0.358398	0	0.0863558	0.938236	0.988498	0.356044	0.20231	0.0416749	0.193108	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001356Homeobox_dom
IPR017970Homeobox_CS
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
Blast
[Close]
BLAST of TCONS_00070249 vs. Swiss-Prot (Human)
Match: NKX21 (Homeobox protein Nkx-2.1 OS=Homo sapiens GN=NKX2-1 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.634e-21
Identity = 42/61 (68.85%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:  877 KKRRILFTRQQTWELERIFRQQPYLSSPEREVLAKKINLTPTQIKIWFQNHRYKMKKYMKD 1059
            +KRR+LF++ Q +ELER F+QQ YLS+PERE LA  I+LTPTQ+KIWFQNHRYKMK+  KD
Sbjct:  162 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKD 222
The following BLAST results are available for this feature:
BLAST of TCONS_00070249 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NKX211.634e-2168.85Homeobox protein Nkx-2.1 OS=Homo sapiens GN=NKX2-1... [more]
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