XLOC_043740 (gene) - C. hemisphaerica

Overview
NameXLOC_043740
Unique NameXLOC_043740
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_516:397097..404109-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_043740 ID=XLOC_043740|Name=XLOC_043740|organism=Clytia hemisphaerica|type=gene|length=7013bp|location=Sequence derived from alignment at scaffold_516:397097..404109- (Clytia hemisphaerica)
CGGCGAGAGGTCGTCAACTTTATGATATTGTCAAGTCTAAATATTATAAA CGGTTATTTTGTAAAGGGCCACCTGCTGGTCTTACAGTATTGGAAGTAAA ACATTTTTTTTCTTATAATACTTCAACTATCATCCACTCTGGATTAAGAT ACAGTAAGGCACATGAATAAAAATCATTTCAAATTTTAGAAATATTTTGA TCAAGGGGAAGCTCACCGTACTTGACAATTTCTTAAATTTTGAAAAAAAG AAATCTTAGAGCGATTACGGATATTAGTAAGAAAAACTTGAATCTATAAA CGCCTTTGAGCTTTCAAAAGCAGTCACATACAAAGGAAAGAGAATGGTGG GGAGGCAAGGCTAAAGAAATGTAAGGATCACTTGCAGAGGCTATTGTAAA CACACAGGAAACTCTCGAAAGATATTTTAGAATTTATTTTTAAATGGTAA TGGTTGTATTGAGTTGACACGTCAATAAAAATCAAATCCGCATTTTGAAC TGGTGCTGATGTTAATTGTTATCAATTCCTTTGTTTAAACTTCAAATAGG AAATTGAAAATATTTGATGTTTGTCATCATCATCAAAGGTGGAAAAATTT AGAAAATTAAATTATTCCTGAACGGTGGACCGGTAAGAACACTAATCCGA AATCAAGACATAGTTATAAACAGTACACAATTTTATGATGTCTTTCTTGA TTGAAAATTTGTTGAAAGATAAGAGCAGTGAAAGGAAAGATCACGATAAA AGCAGAGATCAACTCACACCACCTGCTACTCCAACTAAAGATGATTCTTC AAGACCGAAGCTAGAAGGTAAGTTTTGTGACTTTTGTGACTTTTTTTGAC GAAATTGGTTTTTAGAATGCATAATGGTTCTCGAAATTTGTTCTCTAAAT GCATTTTGAANCAAAAGTTGAAGATTAATAAAAAGTCTACTGTCTACCTA CCCACTTGTTTTTTTAAAAAACTTTCCATTTATTAGCAGTTTACTCTGAT ATTTTAATGAAATTTTACTCTATTTCATTGAATTTTGTTTTGTATAGGGC TTAGAACAAGTGCCAAGGAAATCAGTGATCAACGCTTGCCAATTTTTCTG ATACAGTCTCCTCTTGAAAAAATTGTCAACAACTTTAATCGAGTTAACCC TGTATCCTTTTTAAAACTTTAAAAGTCGGCTTCTGATTGGTTTATAGAAC TATTGATAGGACGTTATTGTCCAATAGGATTGTATCTTGCTTCATTCCCA GTCATTCACAAGAAAAGTTTGACGTAAGTGTGAAAAACATCCTAATCCAA TTTTTGCGATAAAAATCTAGCGCATTCTGATAACTGAAAAGACAAAAATC AACTTAATTACTCATTTAATCTTACTTTGTTTTTCTGAAACAATTTCAAA AATTTTCTGACCTCTAGCAAAACTTTGATAAAGGACTGGGCTCGAATCAA GGTGTGTAATTTTTAAAAGAAAGTAGAAACAAAAATTAAAAGTAAAAATT GAATGGAATAAAAAAGTTACAAAGTTATTTCTTGAAAAACAATGAATAAA AAAATTAACAGGAAATCTTAACATTAATAACAATTAATTTTATTATCTGA TATATAAGATAGTGAAACAGATAGCGGCGAGAGGTCGTCAACTTTATGAT ATTGTCAAGTCTAAATATTATAAACGGTTATTTTGTAAAGGGCCACCTGC TGGTCTTACAGTATTGGAAGTAAAACATTTTTTTTCTTATAATACTTCAA CTATCATCCACTCTGGATTAAGATACAGTAAGGCACATGAATAAAAATCA TTTCAAATTTTAGAAATATTTTGATCAAGGGGAAGCTCACCGTACTTGAC AATTTCTTAAATTTTGAAAAAAAGAAATCTTAGAGCGATTACGGATATTA GTAAGAAAAACTTGAATCTATAAACGCCTTTGAGCTTTCAAAAGCAGTCA CATACAAAGGAAAGAGAATGGTGGGGAGGCAAGGCTAAAGAAATGTAAGG ATCACTTGCAGAGGCTATTGTAAACACACAGGAAACTCTCGAAAGATATT TTAGAATTTATTTTTAAATGGTAATGGTTGTATTGAGTTGACACGTCAAT AAAAATCAAATCCGCATTTTGAACTGGTGCTGATGTTAATTGTTATCAAT TCCTTTGTTTAAACTTCAAATAGGAAATTGAAAATATTTGATGTTTGTCA TCATCATCAAAGGTGGAAAAATTTAGAAAATTAAATTATTCCTGAACGGT GGACCGGTAAGAACACTAATCCGAAATCAAGACATAGTTATAAACAGTAC ACAATTTTATGATGTCTTTCTTGATTGAAAATTTGTTGAAAGATAAGAGC AGTGAAAGGAAAGATCACGATAAAAGCAGAGATCAACTCACACCACCTGC TACTCCAACTAAAGATGATTCTTCAAGACCGAAGCTAGAAGGTAAGTTTT GTGACTTTTGTGACTTTTTTTGACGAAATTGGTTTTTAGAATGCATAATG GTTCTCGAAATTTGTTCTCTAAATGCATTTTGAANATTAAATCAAAAGTT GAAGATTAATAAAAAATCTACTGTCTACCTACCCACTTGTTTTTTTCAAA AACTTTCCATTTATCAGCAGTTTACTCTGATATTTTAATGAAATTTTACT CTATTTCATTGAATTTTGTTTTGTATAGGGATTAGTACAAGTGCCAAGGA AATCAGTGATCAACGCTTGCCAATTTTTCTGATACACCAGTCTCCTCTTG AAAAAATTGTCAACAACTTTAATCGAGTTAACCCTGTATCACTTTTTAAA ACTTTAAAAGTCGGCTTCTGATTGGTTTATAGAACTATTGATAGGACGTG ATTGTCCAATAGGATTGTATCTTGCTTCATTCCCAGTCATTCACAAGAAA AGTTTGACGTAAGTGTGAAAAACATCCTAATCCAATTTTTGCGATAAAAA ATCTAGCGCATCCTGATAATTGAAAAGACAAAAATCAACTTAATTACTCA TTTAATTTCAAAAATTTTCTGACCTCTAGCAAAACTTTGATAAAGGACTG GGCTCGAATCAAGGTGTGTAATTTTTAAAAGAAAGTAGAAACAAAAATTA AAAGTAAAAATTGAATGGAATAAAAAAGTTACAAAGTTATTTCTTGAAAA ACAATGAATAAAAAAATTAACAGGAAATCTTAACATTAATAACAATTAAT TTTATTATCTGATATATAAGATAGTGAAACAGATAGCGGCGAGAGGTCGT CAACTTTATGATATTGTCAAGTCTAAATATTATAAACGGTTATTTTGTAA AGGGCCACCTGCTGGTCTTACAGTATTGGAAGTAAAACATTTTTTTTCTT ATAATACTTCAACTATCATCCACTCTGGATTAAGATACAGTAAGGCACAT GAATAAAAATCATTTCAAATTTTAGAAATATTTTGATCAAGGGGAAGCTC ACCGTACTTGACAATTTCTTAAATTTTGAAAAAAAGAAATCTTAGAGCGA TTACGGATATTAGTAAGAAAAACTTGAATCTATAAACGCCTTTGAGCTTT CAAAAGCAGTCACATACAAAGGAAAGAGAATGGTGGGGAGGCAAGGCTAA AGAAATGTAAGGATCACTTGCAGAGGCTATTGTAAACACACAGGAAACTC TCGAAAGATATTTTAGAATTTATTTTTAAATGGTAATGGTTGTATTGAGT TGACACGTCAATAAAAATCAAATCCGCATTTTGAACTGGTGCTGATGTTA ATTGTTATCAATTCCTTTGTTTAAACTTCAAATAGGAAATTGAAAATATT TGATGTTTGTCATCATCATCAAAGGTGGAAAAATTTAGAAAATTAAATTA TTCCTGAACGGTGGACCGGTAAGAACACTAATCCGAAATCAAGACATAGT TATAAACAGTACACAATTTTATGATGTCTTTCTTGATTGAAAATTTGTTG AAAGATAAGAGCAGTGAAAGGAAAGATCACGATAAAAGCAGAGATCAACT CACACCACCTGCTACTCCAACTAAAGATGATTCTTCAAGACCGAAGCTAG AAGGTAAGTTTTGTGACTTNTCTAGCGCATTCTGATAACTGAAAAGACAA AAATCAACTTAATTACTCATTTAATCTTACTTTGTTTTTCTGAAACAATT TCAAAAATTTTCTGACCTCTAGCAAAACTTTGATAAAGGACTGGGCTCGA ATCAAGGTGTGTAATTTTTAAAAGAAAGTAGAAACAAAAATTAAAAGTAA AAATTGAATGGAATAAAAAAGTTACAAAGTTATTTCTTGAAAAACAATGA ATAAAAAAATTAACAGGANCATTCTCTACCGATATATGCTTCAACATCAG AGTCCTATAAAAATTGTACTGTCAATGATGGAGAATTTAAAAACGAATGC GGGTTCAGCCTGCACATTGATAGTTGTGGTAGCAAGAATTTTTTGGTTTC ATTTTTCTGAAGTATAGATACTAACAAGAAGGAAAATATCAGTATATCAT TACACCATTCACCTTTTCGATTTTCATACAAAGGAATACCCTTTCTTCGC TTTTTATGATTCTTATAGCACTCACGATTGTATCACGTCCATAAGTAAAA TCAAAAAGTGGTGCAAGTGACTCTGGTTAGTTTGCGAGATTGAAAATTAC AGAGTTCTAAATTCTTAATATTTTTAAATTTAGATTTATCAGACATCGAA CTTTCCAGTGTGGACGAAGATGATTTACAAGACTCATATTCAAAGAAACG AAGGATACTTTTCACACGTCAACAGACATGGGAACTGGAAAGAATTTTTC GACAACAACCTTACTTATCTTCACCAGAACGTGAAGTATTAGCAAAGAAA ATCAACTTGACTCCAACGCAAATTAAGATATGGTTTCAGAATCATAGGTA TGTAGCGTCAGGATTTAACTTCTCGTTGTTGGTTTCCAGTTGGGCCCACA GCGTTGTTTCAACATTCATCTAACGTTGGACGGGGTTACAGATATTAGAT AGATTTTGATGGTAATATCAATCTCCATCAAGTTTCAGTCCGTTATTTTT ACCCCAACTGACTGAAAAAATCCTACTGGATCTGTGAAAAGGGGGTGTAT TAATATAGTATGTATTAATTCAAATTATAAATTTTTATATTTGAAAATTT TAAGAAATTAAATCAATTATTTTCAAATGATGAATAATTTTTCTTAATAT TTTTCATAGATACAAAATGAAGAAATACATGAAGGACATGATTCAACAAG CTGAATATGAATGGCAAAAACAGAAGAACGATCGTTACAATCCAATGCAC TCACCACATCGGAAACTCTCAGCTTCAAGTCCTCCATATCACAACCCTCA CAGATCCTCATACTATAGTCGCCCATCATATCTATCAACTCCACCCTCCT TTCATCGCCCCCGCCCTTATCCACCAAGAAGCAGTATCTCAGATTACACG CCCTCCTCGTCAATATCCAGTTATCCATCAACGCCAAGCACGCCCCAAGA ATCGCCCCGTAAATCACCCTATTGGTCTTCAAGCAGCAGTTGCCCGCCCT CTTTATCACTTTCTACTTCTACTGATAAACTTGTTTTCAACTTNGGCGTC AGGATTTAACTTCTCGTTGTTGGTTTCCAGTTGGGCACACAGCGTTGTTT CAACATTCATCTAACGTTGGACGGGGTTACAGATATTAGATAGATTTTGA CACTTGTGTCAGTTCGGTCAATGGATGATATTGACTTGAAAATGACATTC TAACAACCCCCAGTGGAAAATTGTACTCGAATTTTTGTTTCTACTGAAAT TTTCGTCACTAAACCAAACGTCACTGTAAATATTATGCTTTTTTTCTCAC CCCTACTGAATTCTCTGACTTGGAAACAATGGAATTTAAATTCCCAGTCA TAAAAGATATGGTAATATCAATCCCCATTAAGTCTCAGTCCGTTATTTTT ACCCCAACTGACTGAAAAAATCTTACTGGATCTGTGAAAAGGGGGTGTAT TAATATAGTATGTATTAATTCAAATTATAAATTTTTATATTTGAAAATTT TGAAAAATTAAATCAATTATTTTCAAATGATGAATAATTTTTCTTAATAT TTTTCATAGATACAAAATGAAGAAATACATGAAGGACATGATTCAACAAG CTGAATATGAATGGCAAAAACAGAAGAACGATCGTTACAATCCAATGCAC TCACCACATCGGAAACTCTCAGCTTCAAGTCCTCCATATCACAACCCTCA CAGATCCTCATACTATAGTCGCCCATCATATCTATCAACTCCACCCTCCT TTCATCGCCCCCGCCCTTATCCACCAAGAAGCAGTATCTCAGATTACACG CCCTCCTCGTCAATATCCAGTTATCCATCAACGCCAAGCACGCCCCAAGA ATCACCCCGTAAATCACCCTATTGGTCTTCAAGCAACAGTTGCCCGCCCT CTTTATCACTTTCTACTTCTACTGATAAACTTGTTTTCAACTTCAAGAAG GATGACCTATACAAACATTCACCTACTAATTCGTTGAGATCTTCAGGGCA TTCAAGTTTTGGACCTCACGAACATTTAAAGAAAAAATGGTGTAGTTGCT GTCCTCCAAATATAGAGCGTCCATGAAATGCTGAGACAGCAAAAAATTAT CAGAATTAAAAACGAAAATATTTCGCCTGTTTTACCCCAAAAATTATTTG CGCTGTGTCAGCAGAAAAATAGGCTTTATAAATAAGTTTTCAACGTGTTT TAACGTTTTTTGTTGCAGTTTTTTTAAAATTGCGTTAAATCATATTGTTT TGTATTTAAAAGTAGAGTTTATATGTAGCAAATATATTTATGTTGTGCAA TATTTTTAAAGAAAAATGAATATTAACTAAATACAATAACATATCATAAG TAAATAATATAATATTGAGTAAAAATATAGTCTACATCTACCATATGTGA GAATATGTTATATTTAGAATATCCTTTTGTTGTAAATAGTGTATATAGTA TACAAAATAAAAC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00070252TCONS_00070252Clytia hemisphaericatranscript
TCONS_00070251TCONS_00070251Clytia hemisphaericatranscript
TCONS_00070250TCONS_00070250Clytia hemisphaericatranscript
TCONS_00070249TCONS_00070249Clytia hemisphaericatranscript
TCONS_00070248TCONS_00070248Clytia hemisphaericatranscript
TCONS_00070247TCONS_00070247Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
NK2d homeodomain transcription factor proteinTCONS_00070249-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_516supercontigscaffold_516:397097..404109 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.03 0.06 0 0 0 0.12 10.83 11.6 6.12 6.48 1.63 4.91 3.17 3.62 0 0 3.51 3.55 5.95 6.86 4.24 5.35 0.97 0.87 1.09 2.04 0 0 0 0