TCONS_00070247 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070247
Unique NameTCONS_00070247
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1935

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070247 ID=TCONS_00070247|Name=TCONS_00070247|organism=Clytia hemisphaerica|type=transcript|length=1935bp
CGGCGAGAGGTCGTCAACTTTATGATATTGTCAAGTCTAAATATTATAAA
CGGTTATTTTGTAAAGGGCCACCTGCTGGTCTTACAGTATTGgaagtaaa
acattttttttcttataatactTCAACTATCATCCACTCTGGATTAAGAT
ACAGTAAGGCACATGaataaaaatcatttcaaattttagaaatattttga
tcaAGGGGAAGCTCACCGTACTTGacaatttcttaaattttgaaaaaaag
aaatcttagAGCGATTACGGATATTAGTAAGAAAAACTTGAATCTATAAA
CGCCTTTGAGCTTTCAAAAGCAGTCACATACAAAGGAAAGAGAATGGTGG
GGAGGCAAGGCTAAAGAAATGTAAGGATCACTTGCAGAGGCTATTGTAAA
CACACAGGAAACTCTCGAAagatattttagaatttatttttaaatggtAA
TGGTTGTATTGAGTTGACACGTCAATAAAAATCAAATCCGCATTTTGAAC
TGGTGCTGATGTTAATTGTTAtcaattcctttgtttaaaCTTCAAATagg
aaattgaaaatatttgatgtttgtcatcatcatcaaaggtggaaaaattt
agaaaattaaattattccTGAACGGTGGACCGGTAAGAACACTAATCCGA
AATCAAGACATAGTTATAAACAGTACACAATTTTATGATGTCTTtcttga
ttgaaaatttgttgaaagataagAGCAGTGAAAGGAAAGATCACGATAAA
AGCAGAGATCAACTCACACCACCTGCTACTCCAACTAAAGATGATTCTTC
AAGACCGAAGCTAGAAGattTATCAGACATCGAACTTTCCAGTGTGGACG
AAGATGATTTACAAGACTCATATTCAAAGAAACGAAGGATACTTTTCACA
CGTCAACAGACATGGGAACTGGAAAGAATTTTTCGACAACAACCTTACTT
ATCTTCACCAGAACGTGAAGTATTagcaaagaaaatcaacttgACTCCAA
CGCAAATTAAGATATGGTTTCAGAATCATAGatacaaaatgaagaaataC
ATGAAGGACATGATTCAACAAGCTGAATATGAATGGCAAAAACAGAAGAA
CGATCGTTACAATCCAATGCACTCACCACATCGGAAACTCTCAGCTTCAA
GTCCTCCATATCACAACCCTCACAGATCCTCATACTATAGTCGCCCATCA
TATCTATCAACTCCACCCTCCTTTCATCGCCCCCGCCCTTATCCACCAAG
AAGCAGTATCTCAGATTACACGCCCTCCTCGTCAATATCCAGTTATCCAT
CAACGCCAAGCACGCCCCAAGAATCACCCCGTAAATCACCCTATTGGTCT
TCAAGCAACAGTTGCCCGCCCTCTTTATCACTTTCTACTTCTACTGATAA
ACTTGTTTTCAACTTCAAGAAGGATGACCTATACAAACATTCACCTACTA
ATTCGTTGAGATCTTCAGGGCATTCAAGTTTTGGACCTCACGaacattta
aagaaaaaatggtgTAGTTGCTGTCCTCCAAATATAGAGCGTCCATGAAA
TGCTGAGACAGCAAAAAATTATCAGAATTAAAAACGAAAATATTTCGCCT
GTTTTACCCCAAAAATTATTTGCGCTGTGTCAGCAGAAAAATAGGCTTTA
TAAATAAGTTTTCAAcgtgttttaacgttttttgttGCAGTTTTTTTAAA
ATTGCGTTAAATCATATTGTTTTGTATTTAAAAGTAGAGTTTATATGTAG
CAAATATATTTATGTTGTgcaatatttttaaagaaaaatgaatattaaCT
AAATACAATAACATATCATAAGTAAATAATATAATATTGAGTAAAAATAT
AGTCTACATCTACCATATGTGAGAATATGTTATATTTAGAATATCCTTTT
GTTGTAAATAGTGTATATAGTATACAAAATAAAAC
Run BLAST on NCBI

transcript from alignment at scaffold_516:397097..400873-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070247 ID=TCONS_00070247|Name=TCONS_00070247|organism=Clytia hemisphaerica|type=transcript|length=3777bp|location=Sequence derived from alignment at scaffold_516:397097..400873- (Clytia hemisphaerica)
CGGCGAGAGGTCGTCAACTTTATGATATTGTCAAGTCTAAATATTATAAA
CGGTTATTTTGTAAAGGGCCACCTGCTGGTCTTACAGTATTGGAAGTAAA
ACATTTTTTTTCTTATAATACTTCAACTATCATCCACTCTGGATTAAGAT
ACAGTAAGGCACATGAATAAAAATCATTTCAAATTTTAGAAATATTTTGA
TCAAGGGGAAGCTCACCGTACTTGACAATTTCTTAAATTTTGAAAAAAAG
AAATCTTAGAGCGATTACGGATATTAGTAAGAAAAACTTGAATCTATAAA
CGCCTTTGAGCTTTCAAAAGCAGTCACATACAAAGGAAAGAGAATGGTGG
GGAGGCAAGGCTAAAGAAATGTAAGGATCACTTGCAGAGGCTATTGTAAA
CACACAGGAAACTCTCGAAAGATATTTTAGAATTTATTTTTAAATGGTAA
TGGTTGTATTGAGTTGACACGTCAATAAAAATCAAATCCGCATTTTGAAC
TGGTGCTGATGTTAATTGTTATCAATTCCTTTGTTTAAACTTCAAATAGG
AAATTGAAAATATTTGATGTTTGTCATCATCATCAAAGGTGGAAAAATTT
AGAAAATTAAATTATTCCTGAACGGTGGACCGGTAAGAACACTAATCCGA
AATCAAGACATAGTTATAAACAGTACACAATTTTATGATGTCTTTCTTGA
TTGAAAATTTGTTGAAAGATAAGAGCAGTGAAAGGAAAGATCACGATAAA
AGCAGAGATCAACTCACACCACCTGCTACTCCAACTAAAGATGATTCTTC
AAGACCGAAGCTAGAAGGTAAGTTTTGTGACTTNTCTAGCGCATTCTGAT
AACTGAAAAGACAAAAATCAACTTAATTACTCATTTAATCTTACTTTGTT
TTTCTGAAACAATTTCAAAAATTTTCTGACCTCTAGCAAAACTTTGATAA
AGGACTGGGCTCGAATCAAGGTGTGTAATTTTTAAAAGAAAGTAGAAACA
AAAATTAAAAGTAAAAATTGAATGGAATAAAAAAGTTACAAAGTTATTTC
TTGAAAAACAATGAATAAAAAAATTAACAGGANCATTCTCTACCGATATA
TGCTTCAACATCAGAGTCCTATAAAAATTGTACTGTCAATGATGGAGAAT
TTAAAAACGAATGCGGGTTCAGCCTGCACATTGATAGTTGTGGTAGCAAG
AATTTTTTGGTTTCATTTTTCTGAAGTATAGATACTAACAAGAAGGAAAA
TATCAGTATATCATTACACCATTCACCTTTTCGATTTTCATACAAAGGAA
TACCCTTTCTTCGCTTTTTATGATTCTTATAGCACTCACGATTGTATCAC
GTCCATAAGTAAAATCAAAAAGTGGTGCAAGTGACTCTGGTTAGTTTGCG
AGATTGAAAATTACAGAGTTCTAAATTCTTAATATTTTTAAATTTAGATT
TATCAGACATCGAACTTTCCAGTGTGGACGAAGATGATTTACAAGACTCA
TATTCAAAGAAACGAAGGATACTTTTCACACGTCAACAGACATGGGAACT
GGAAAGAATTTTTCGACAACAACCTTACTTATCTTCACCAGAACGTGAAG
TATTAGCAAAGAAAATCAACTTGACTCCAACGCAAATTAAGATATGGTTT
CAGAATCATAGGTATGTAGCGTCAGGATTTAACTTCTCGTTGTTGGTTTC
CAGTTGGGCCCACAGCGTTGTTTCAACATTCATCTAACGTTGGACGGGGT
TACAGATATTAGATAGATTTTGATGGTAATATCAATCTCCATCAAGTTTC
AGTCCGTTATTTTTACCCCAACTGACTGAAAAAATCCTACTGGATCTGTG
AAAAGGGGGTGTATTAATATAGTATGTATTAATTCAAATTATAAATTTTT
ATATTTGAAAATTTTAAGAAATTAAATCAATTATTTTCAAATGATGAATA
ATTTTTCTTAATATTTTTCATAGATACAAAATGAAGAAATACATGAAGGA
CATGATTCAACAAGCTGAATATGAATGGCAAAAACAGAAGAACGATCGTT
ACAATCCAATGCACTCACCACATCGGAAACTCTCAGCTTCAAGTCCTCCA
TATCACAACCCTCACAGATCCTCATACTATAGTCGCCCATCATATCTATC
AACTCCACCCTCCTTTCATCGCCCCCGCCCTTATCCACCAAGAAGCAGTA
TCTCAGATTACACGCCCTCCTCGTCAATATCCAGTTATCCATCAACGCCA
AGCACGCCCCAAGAATCGCCCCGTAAATCACCCTATTGGTCTTCAAGCAG
CAGTTGCCCGCCCTCTTTATCACTTTCTACTTCTACTGATAAACTTGTTT
TCAACTTNGGCGTCAGGATTTAACTTCTCGTTGTTGGTTTCCAGTTGGGC
ACACAGCGTTGTTTCAACATTCATCTAACGTTGGACGGGGTTACAGATAT
TAGATAGATTTTGACACTTGTGTCAGTTCGGTCAATGGATGATATTGACT
TGAAAATGACATTCTAACAACCCCCAGTGGAAAATTGTACTCGAATTTTT
GTTTCTACTGAAATTTTCGTCACTAAACCAAACGTCACTGTAAATATTAT
GCTTTTTTTCTCACCCCTACTGAATTCTCTGACTTGGAAACAATGGAATT
TAAATTCCCAGTCATAAAAGATATGGTAATATCAATCCCCATTAAGTCTC
AGTCCGTTATTTTTACCCCAACTGACTGAAAAAATCTTACTGGATCTGTG
AAAAGGGGGTGTATTAATATAGTATGTATTAATTCAAATTATAAATTTTT
ATATTTGAAAATTTTGAAAAATTAAATCAATTATTTTCAAATGATGAATA
ATTTTTCTTAATATTTTTCATAGATACAAAATGAAGAAATACATGAAGGA
CATGATTCAACAAGCTGAATATGAATGGCAAAAACAGAAGAACGATCGTT
ACAATCCAATGCACTCACCACATCGGAAACTCTCAGCTTCAAGTCCTCCA
TATCACAACCCTCACAGATCCTCATACTATAGTCGCCCATCATATCTATC
AACTCCACCCTCCTTTCATCGCCCCCGCCCTTATCCACCAAGAAGCAGTA
TCTCAGATTACACGCCCTCCTCGTCAATATCCAGTTATCCATCAACGCCA
AGCACGCCCCAAGAATCACCCCGTAAATCACCCTATTGGTCTTCAAGCAA
CAGTTGCCCGCCCTCTTTATCACTTTCTACTTCTACTGATAAACTTGTTT
TCAACTTCAAGAAGGATGACCTATACAAACATTCACCTACTAATTCGTTG
AGATCTTCAGGGCATTCAAGTTTTGGACCTCACGAACATTTAAAGAAAAA
ATGGTGTAGTTGCTGTCCTCCAAATATAGAGCGTCCATGAAATGCTGAGA
CAGCAAAAAATTATCAGAATTAAAAACGAAAATATTTCGCCTGTTTTACC
CCAAAAATTATTTGCGCTGTGTCAGCAGAAAAATAGGCTTTATAAATAAG
TTTTCAACGTGTTTTAACGTTTTTTGTTGCAGTTTTTTTAAAATTGCGTT
AAATCATATTGTTTTGTATTTAAAAGTAGAGTTTATATGTAGCAAATATA
TTTATGTTGTGCAATATTTTTAAAGAAAAATGAATATTAACTAAATACAA
TAACATATCATAAGTAAATAATATAATATTGAGTAAAAATATAGTCTACA
TCTACCATATGTGAGAATATGTTATATTTAGAATATCCTTTTGTTGTAAA
TAGTGTATATAGTATACAAAATAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043740XLOC_043740Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070247-exon-scaffold_516-1575043694:400057..400873TCONS_00070247-exon-scaffold_516-1575043694:400057..400873Clytia hemisphaericaexon
TCONS_00070247-exon-scaffold_516-1575043694:399213..399426TCONS_00070247-exon-scaffold_516-1575043694:399213..399426Clytia hemisphaericaexon
TCONS_00070247-exon-scaffold_516-1575043694:397097..398000TCONS_00070247-exon-scaffold_516-1575043694:397097..398000Clytia hemisphaericaexon
TCONS_00070247-exon-scaffold_516-1510915933:400057..400873TCONS_00070247-exon-scaffold_516-1510915933:400057..400873Clytia hemisphaericaexon
TCONS_00070247-exon-scaffold_516-1510915933:399213..399426TCONS_00070247-exon-scaffold_516-1510915933:399213..399426Clytia hemisphaericaexon
TCONS_00070247-exon-scaffold_516-1510915933:397097..398000TCONS_00070247-exon-scaffold_516-1510915933:397097..398000Clytia hemisphaericaexon
TCONS_00070247-exon-scaffold_516-1491911889:400057..400873TCONS_00070247-exon-scaffold_516-1491911889:400057..400873Clytia hemisphaericaexon
TCONS_00070247-exon-scaffold_516-1491911889:399213..399426TCONS_00070247-exon-scaffold_516-1491911889:399213..399426Clytia hemisphaericaexon
TCONS_00070247-exon-scaffold_516-1491911889:397097..398000TCONS_00070247-exon-scaffold_516-1491911889:397097..398000Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_516supercontigscaffold_516:397097..400873 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	2.59406	2.85285	1.47192	1.5396	0.471909	1.58031	0	0	0	0	0.55364	0.358398	0	0.0863558	0.938236	0.988498	0.356044	0.20231	0.0416749	0.193108	0	0	0	0
Blast
[Close]
BLAST of TCONS_00070247 vs. Swiss-Prot (Human)
Match: NKX21 (Homeobox protein Nkx-2.1 OS=Homo sapiens GN=NKX2-1 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.634e-21
Identity = 42/61 (68.85%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:  877 KKRRILFTRQQTWELERIFRQQPYLSSPEREVLAKKINLTPTQIKIWFQNHRYKMKKYMKD 1059
            +KRR+LF++ Q +ELER F+QQ YLS+PERE LA  I+LTPTQ+KIWFQNHRYKMK+  KD
Sbjct:  162 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKD 222
The following BLAST results are available for this feature:
BLAST of TCONS_00070247 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NKX211.634e-2168.85Homeobox protein Nkx-2.1 OS=Homo sapiens GN=NKX2-1... [more]
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