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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070250 ID=TCONS_00070250|Name=TCONS_00070250|organism=Clytia hemisphaerica|type=transcript|length=840bp
atcatcatcaaaggtggaaaaatttagaaaattaaattattccTGAACGG
TGGACCGGTAAGAACACTAATCCGAAATCAAGACATAGTTATAAACAGTA
CACAATTTTATGATGTCTTtcttgattgaaaatttgttgaaagataagAG
CAGTGAAAGGAAAGATCACGATAAAAGCAGAGATCAACTCACACCACCTG
CTACTCCAACTAAAGATGATTCTTCAAGACCGAAGCTAGAAGattTATCA
GACATCGAACTTTCCAGTGTGGACGAAGATGATTTACAAGACTCATATTC
AAAGAAACGAAGGATACTTTTCACACGTCAACAGACATGGGAACTGGAAA
GAATTTTTCGACAACAACCTTACTTATCTTCACCAGAACGTGAAGTATTa
gcaaagaaaatcaacttgACTCCAACGCAAATTAAGATATGGTTTCAGAA
TCATAGatacaaaatgaagaaataCATGAAGGACATGATTCAACAAGCTG
AATATGAATGGCAAAAACAGAAGAACGATCGTTACAATCCAATGCACTCA
CCACATCGGAAACTCTCAGCTTCAAGTCCTCCATATCACAACCCTCACAG
ATCCTCATACTATAGTCGCCCATCATATCTATCAACTCCACCCTCCTTTC
ATCGCCCCCGCCCTTATCCACCAAGAAGCAGTATCTCAGATTACACGCCC
TCCTCGTCAATATCCAGTTATCCATCAACGCCAAGCACGCCCCAAGAATC
GCCCCGTAAATCACCCTATTGGTCTTCAAGCAGCAGTTGCCCGCCCTCTT
TATCACTTTCTACTTCTACTGATAAACTTGTTTTCAACTT Run BLAST on NCBI transcript from alignment at scaffold_516:398517..400298- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070250 ID=TCONS_00070250|Name=TCONS_00070250|organism=Clytia hemisphaerica|type=transcript|length=1782bp|location=Sequence derived from alignment at scaffold_516:398517..400298- (Clytia hemisphaerica)
ATCATCATCAAAGGTGGAAAAATTTAGAAAATTAAATTATTCCTGAACGG
TGGACCGGTAAGAACACTAATCCGAAATCAAGACATAGTTATAAACAGTA
CACAATTTTATGATGTCTTTCTTGATTGAAAATTTGTTGAAAGATAAGAG
CAGTGAAAGGAAAGATCACGATAAAAGCAGAGATCAACTCACACCACCTG
CTACTCCAACTAAAGATGATTCTTCAAGACCGAAGCTAGAAGGTAAGTTT
TGTGACTTNTCTAGCGCATTCTGATAACTGAAAAGACAAAAATCAACTTA
ATTACTCATTTAATCTTACTTTGTTTTTCTGAAACAATTTCAAAAATTTT
CTGACCTCTAGCAAAACTTTGATAAAGGACTGGGCTCGAATCAAGGTGTG
TAATTTTTAAAAGAAAGTAGAAACAAAAATTAAAAGTAAAAATTGAATGG
AATAAAAAAGTTACAAAGTTATTTCTTGAAAAACAATGAATAAAAAAATT
AACAGGANCATTCTCTACCGATATATGCTTCAACATCAGAGTCCTATAAA
AATTGTACTGTCAATGATGGAGAATTTAAAAACGAATGCGGGTTCAGCCT
GCACATTGATAGTTGTGGTAGCAAGAATTTTTTGGTTTCATTTTTCTGAA
GTATAGATACTAACAAGAAGGAAAATATCAGTATATCATTACACCATTCA
CCTTTTCGATTTTCATACAAAGGAATACCCTTTCTTCGCTTTTTATGATT
CTTATAGCACTCACGATTGTATCACGTCCATAAGTAAAATCAAAAAGTGG
TGCAAGTGACTCTGGTTAGTTTGCGAGATTGAAAATTACAGAGTTCTAAA
TTCTTAATATTTTTAAATTTAGATTTATCAGACATCGAACTTTCCAGTGT
GGACGAAGATGATTTACAAGACTCATATTCAAAGAAACGAAGGATACTTT
TCACACGTCAACAGACATGGGAACTGGAAAGAATTTTTCGACAACAACCT
TACTTATCTTCACCAGAACGTGAAGTATTAGCAAAGAAAATCAACTTGAC
TCCAACGCAAATTAAGATATGGTTTCAGAATCATAGGTATGTAGCGTCAG
GATTTAACTTCTCGTTGTTGGTTTCCAGTTGGGCCCACAGCGTTGTTTCA
ACATTCATCTAACGTTGGACGGGGTTACAGATATTAGATAGATTTTGATG
GTAATATCAATCTCCATCAAGTTTCAGTCCGTTATTTTTACCCCAACTGA
CTGAAAAAATCCTACTGGATCTGTGAAAAGGGGGTGTATTAATATAGTAT
GTATTAATTCAAATTATAAATTTTTATATTTGAAAATTTTAAGAAATTAA
ATCAATTATTTTCAAATGATGAATAATTTTTCTTAATATTTTTCATAGAT
ACAAAATGAAGAAATACATGAAGGACATGATTCAACAAGCTGAATATGAA
TGGCAAAAACAGAAGAACGATCGTTACAATCCAATGCACTCACCACATCG
GAAACTCTCAGCTTCAAGTCCTCCATATCACAACCCTCACAGATCCTCAT
ACTATAGTCGCCCATCATATCTATCAACTCCACCCTCCTTTCATCGCCCC
CGCCCTTATCCACCAAGAAGCAGTATCTCAGATTACACGCCCTCCTCGTC
AATATCCAGTTATCCATCAACGCCAAGCACGCCCCAAGAATCGCCCCGTA
AATCACCCTATTGGTCTTCAAGCAGCAGTTGCCCGCCCTCTTTATCACTT
TCTACTTCTACTGATAAACTTGTTTTCAACTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070250-exon-scaffold_516-1575043694:400057..400298 | TCONS_00070250-exon-scaffold_516-1575043694:400057..400298 | Clytia hemisphaerica | exon |
| TCONS_00070250-exon-scaffold_516-1575043694:399213..399426 | TCONS_00070250-exon-scaffold_516-1575043694:399213..399426 | Clytia hemisphaerica | exon |
| TCONS_00070250-exon-scaffold_516-1575043694:398517..398900 | TCONS_00070250-exon-scaffold_516-1575043694:398517..398900 | Clytia hemisphaerica | exon |
| TCONS_00070250-exon-scaffold_516-1510915933:400057..400298 | TCONS_00070250-exon-scaffold_516-1510915933:400057..400298 | Clytia hemisphaerica | exon |
| TCONS_00070250-exon-scaffold_516-1510915933:399213..399426 | TCONS_00070250-exon-scaffold_516-1510915933:399213..399426 | Clytia hemisphaerica | exon |
| TCONS_00070250-exon-scaffold_516-1510915933:398517..398900 | TCONS_00070250-exon-scaffold_516-1510915933:398517..398900 | Clytia hemisphaerica | exon |
| TCONS_00070250-exon-scaffold_516-1491911889:400057..400298 | TCONS_00070250-exon-scaffold_516-1491911889:400057..400298 | Clytia hemisphaerica | exon |
| TCONS_00070250-exon-scaffold_516-1491911889:399213..399426 | TCONS_00070250-exon-scaffold_516-1491911889:399213..399426 | Clytia hemisphaerica | exon |
| TCONS_00070250-exon-scaffold_516-1491911889:398517..398900 | TCONS_00070250-exon-scaffold_516-1491911889:398517..398900 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_516 | supercontig | scaffold_516:398517..400298 - |
Blast
BLAST of TCONS_00070250 vs. Swiss-Prot (Human)
Match: NKX21 (Homeobox protein Nkx-2.1 OS=Homo sapiens GN=NKX2-1 PE=1 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 5.833e-23 Identity = 42/61 (68.85%), Postives = 52/61 (85.25%), Query Frame = 2
Query: 302 KKRRILFTRQQTWELERIFRQQPYLSSPEREVLAKKINLTPTQIKIWFQNHRYKMKKYMKD 484
+KRR+LF++ Q +ELER F+QQ YLS+PERE LA I+LTPTQ+KIWFQNHRYKMK+ KD
Sbjct: 162 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKD 222
The following BLAST results are available for this feature:
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