|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070248 ID=TCONS_00070248|Name=TCONS_00070248|organism=Clytia hemisphaerica|type=transcript|length=1478bp
ATTGAGTTGACACGTCAATAAAAATCAAATCCGCATTTTGAACTGGTGCT
GATGTTAATTGTTAtcaattcctttgtttaaaCTTCAAATaggaaattga
aaatatttgatgtttgtcatcatcatcaaaggtggaaaaatttagaaaat
taaattattccTGAACGGTGGACCGGTAAGAACACTAATCCGAAATCAAG
ACATAGTTATAAACAGTACACAATTTTATGATGTCTTtcttgattgaaaa
tttgttgaaagataagAGCAGTGAAAGGAAAGATCACGATAAAAGCAGAG
ATCAACTCACACCACCTGCTACTCCAACTAAAGATGATTCTTCAAGACCG
AAGCTAGAAGattTATCAGACATCGAACTTTCCAGTGTGGACGAAGATGA
TTTACAAGACTCATATTCAAAGAAACGAAGGATACTTTTCACACGTCAAC
AGACATGGGAACTGGAAAGAATTTTTCGACAACAACCTTACTTATCTTCA
CCAGAACGTGAAGTATTagcaaagaaaatcaacttgACTCCAACGCAAAT
TAAGATATGGTTTCAGAATCATAGatacaaaatgaagaaataCATGAAGG
ACATGATTCAACAAGCTGAATATGAATGGCAAAAACAGAAGAACGATCGT
TACAATCCAATGCACTCACCACATCGGAAACTCTCAGCTTCAAGTCCTCC
ATATCACAACCCTCACAGATCCTCATACTATAGTCGCCCATCATATCTAT
CAACTCCACCCTCCTTTCATCGCCCCCGCCCTTATCCACCAAGAAGCAGT
ATCTCAGATTACACGCCCTCCTCGTCAATATCCAGTTATCCATCAACGCC
AAGCACGCCCCAAGAATCACCCCGTAAATCACCCTATTGGTCTTCAAGCA
ACAGTTGCCCGCCCTCTTTATCACTTTCTACTTCTACTGATAAACTTGTT
TTCAACTTCAAGAAGGATGACCTATACAAACATTCACCTACTAATTCGTT
GAGATCTTCAGGGCATTCAAGTTTTGGACCTCACGaacatttaaagaaaa
aatggtgTAGTTGCTGTCCTCCAAATATAGAGCGTCCATGAAATGCTGAG
ACAGCAAAAAATTATCAGAATTAAAAACGAAAATATTTCGCCTGTTTTAC
CCCAAAAATTATTTGCGCTGTGTCAGCAGAAAAATAGGCTTTATAAATAA
GTTTTCAAcgtgttttaacgttttttgttGCAGTTTTTTTAAAATTGCGT
TAAATCATATTGTTTTGTATTTAAAAGTAGAGTTTATATGTAGCAAATAT
ATTTATGTTGTgcaatatttttaaagaaaaatgaatattaaCTAAATACA
ATAACATATCATAAGTAAATAATATAATATTGAGTAAAAATATAGTCTAC
ATCTACCATATGTGAGAATATGTTATATTTAGAATATCCTTTTGTTGTAA
ATAGTGTATATAGTATACAAAATAAAAC Run BLAST on NCBI transcript from alignment at scaffold_516:397097..402028- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070248 ID=TCONS_00070248|Name=TCONS_00070248|organism=Clytia hemisphaerica|type=transcript|length=4932bp|location=Sequence derived from alignment at scaffold_516:397097..402028- (Clytia hemisphaerica)
ATTGAGTTGACACGTCAATAAAAATCAAATCCGCATTTTGAACTGGTGCT
GATGTTAATTGTTATCAATTCCTTTGTTTAAACTTCAAATAGGAAATTGA
AAATATTTGATGTTTGTCATCATCATCAAAGGTGGAAAAATTTAGAAAAT
TAAATTATTCCTGAACGGTGGACCGGTAAGAACACTAATCCGAAATCAAG
ACATAGTTATAAACAGTACACAATTTTATGATGTCTTTCTTGATTGAAAA
TTTGTTGAAAGATAAGAGCAGTGAAAGGAAAGATCACGATAAAAGCAGAG
ATCAACTCACACCACCTGCTACTCCAACTAAAGATGATTCTTCAAGACCG
AAGCTAGAAGGTAAGTTTTGTGACTTTTGTGACTTTTTTTGACGAAATTG
GTTTTTAGAATGCATAATGGTTCTCGAAATTTGTTCTCTAAATGCATTTT
GAANATTAAATCAAAAGTTGAAGATTAATAAAAAATCTACTGTCTACCTA
CCCACTTGTTTTTTTCAAAAACTTTCCATTTATCAGCAGTTTACTCTGAT
ATTTTAATGAAATTTTACTCTATTTCATTGAATTTTGTTTTGTATAGGGA
TTAGTACAAGTGCCAAGGAAATCAGTGATCAACGCTTGCCAATTTTTCTG
ATACACCAGTCTCCTCTTGAAAAAATTGTCAACAACTTTAATCGAGTTAA
CCCTGTATCACTTTTTAAAACTTTAAAAGTCGGCTTCTGATTGGTTTATA
GAACTATTGATAGGACGTGATTGTCCAATAGGATTGTATCTTGCTTCATT
CCCAGTCATTCACAAGAAAAGTTTGACGTAAGTGTGAAAAACATCCTAAT
CCAATTTTTGCGATAAAAAATCTAGCGCATCCTGATAATTGAAAAGACAA
AAATCAACTTAATTACTCATTTAATTTCAAAAATTTTCTGACCTCTAGCA
AAACTTTGATAAAGGACTGGGCTCGAATCAAGGTGTGTAATTTTTAAAAG
AAAGTAGAAACAAAAATTAAAAGTAAAAATTGAATGGAATAAAAAAGTTA
CAAAGTTATTTCTTGAAAAACAATGAATAAAAAAATTAACAGGAAATCTT
AACATTAATAACAATTAATTTTATTATCTGATATATAAGATAGTGAAACA
GATAGCGGCGAGAGGTCGTCAACTTTATGATATTGTCAAGTCTAAATATT
ATAAACGGTTATTTTGTAAAGGGCCACCTGCTGGTCTTACAGTATTGGAA
GTAAAACATTTTTTTTCTTATAATACTTCAACTATCATCCACTCTGGATT
AAGATACAGTAAGGCACATGAATAAAAATCATTTCAAATTTTAGAAATAT
TTTGATCAAGGGGAAGCTCACCGTACTTGACAATTTCTTAAATTTTGAAA
AAAAGAAATCTTAGAGCGATTACGGATATTAGTAAGAAAAACTTGAATCT
ATAAACGCCTTTGAGCTTTCAAAAGCAGTCACATACAAAGGAAAGAGAAT
GGTGGGGAGGCAAGGCTAAAGAAATGTAAGGATCACTTGCAGAGGCTATT
GTAAACACACAGGAAACTCTCGAAAGATATTTTAGAATTTATTTTTAAAT
GGTAATGGTTGTATTGAGTTGACACGTCAATAAAAATCAAATCCGCATTT
TGAACTGGTGCTGATGTTAATTGTTATCAATTCCTTTGTTTAAACTTCAA
ATAGGAAATTGAAAATATTTGATGTTTGTCATCATCATCAAAGGTGGAAA
AATTTAGAAAATTAAATTATTCCTGAACGGTGGACCGGTAAGAACACTAA
TCCGAAATCAAGACATAGTTATAAACAGTACACAATTTTATGATGTCTTT
CTTGATTGAAAATTTGTTGAAAGATAAGAGCAGTGAAAGGAAAGATCACG
ATAAAAGCAGAGATCAACTCACACCACCTGCTACTCCAACTAAAGATGAT
TCTTCAAGACCGAAGCTAGAAGGTAAGTTTTGTGACTTNTCTAGCGCATT
CTGATAACTGAAAAGACAAAAATCAACTTAATTACTCATTTAATCTTACT
TTGTTTTTCTGAAACAATTTCAAAAATTTTCTGACCTCTAGCAAAACTTT
GATAAAGGACTGGGCTCGAATCAAGGTGTGTAATTTTTAAAAGAAAGTAG
AAACAAAAATTAAAAGTAAAAATTGAATGGAATAAAAAAGTTACAAAGTT
ATTTCTTGAAAAACAATGAATAAAAAAATTAACAGGANCATTCTCTACCG
ATATATGCTTCAACATCAGAGTCCTATAAAAATTGTACTGTCAATGATGG
AGAATTTAAAAACGAATGCGGGTTCAGCCTGCACATTGATAGTTGTGGTA
GCAAGAATTTTTTGGTTTCATTTTTCTGAAGTATAGATACTAACAAGAAG
GAAAATATCAGTATATCATTACACCATTCACCTTTTCGATTTTCATACAA
AGGAATACCCTTTCTTCGCTTTTTATGATTCTTATAGCACTCACGATTGT
ATCACGTCCATAAGTAAAATCAAAAAGTGGTGCAAGTGACTCTGGTTAGT
TTGCGAGATTGAAAATTACAGAGTTCTAAATTCTTAATATTTTTAAATTT
AGATTTATCAGACATCGAACTTTCCAGTGTGGACGAAGATGATTTACAAG
ACTCATATTCAAAGAAACGAAGGATACTTTTCACACGTCAACAGACATGG
GAACTGGAAAGAATTTTTCGACAACAACCTTACTTATCTTCACCAGAACG
TGAAGTATTAGCAAAGAAAATCAACTTGACTCCAACGCAAATTAAGATAT
GGTTTCAGAATCATAGGTATGTAGCGTCAGGATTTAACTTCTCGTTGTTG
GTTTCCAGTTGGGCCCACAGCGTTGTTTCAACATTCATCTAACGTTGGAC
GGGGTTACAGATATTAGATAGATTTTGATGGTAATATCAATCTCCATCAA
GTTTCAGTCCGTTATTTTTACCCCAACTGACTGAAAAAATCCTACTGGAT
CTGTGAAAAGGGGGTGTATTAATATAGTATGTATTAATTCAAATTATAAA
TTTTTATATTTGAAAATTTTAAGAAATTAAATCAATTATTTTCAAATGAT
GAATAATTTTTCTTAATATTTTTCATAGATACAAAATGAAGAAATACATG
AAGGACATGATTCAACAAGCTGAATATGAATGGCAAAAACAGAAGAACGA
TCGTTACAATCCAATGCACTCACCACATCGGAAACTCTCAGCTTCAAGTC
CTCCATATCACAACCCTCACAGATCCTCATACTATAGTCGCCCATCATAT
CTATCAACTCCACCCTCCTTTCATCGCCCCCGCCCTTATCCACCAAGAAG
CAGTATCTCAGATTACACGCCCTCCTCGTCAATATCCAGTTATCCATCAA
CGCCAAGCACGCCCCAAGAATCGCCCCGTAAATCACCCTATTGGTCTTCA
AGCAGCAGTTGCCCGCCCTCTTTATCACTTTCTACTTCTACTGATAAACT
TGTTTTCAACTTNGGCGTCAGGATTTAACTTCTCGTTGTTGGTTTCCAGT
TGGGCACACAGCGTTGTTTCAACATTCATCTAACGTTGGACGGGGTTACA
GATATTAGATAGATTTTGACACTTGTGTCAGTTCGGTCAATGGATGATAT
TGACTTGAAAATGACATTCTAACAACCCCCAGTGGAAAATTGTACTCGAA
TTTTTGTTTCTACTGAAATTTTCGTCACTAAACCAAACGTCACTGTAAAT
ATTATGCTTTTTTTCTCACCCCTACTGAATTCTCTGACTTGGAAACAATG
GAATTTAAATTCCCAGTCATAAAAGATATGGTAATATCAATCCCCATTAA
GTCTCAGTCCGTTATTTTTACCCCAACTGACTGAAAAAATCTTACTGGAT
CTGTGAAAAGGGGGTGTATTAATATAGTATGTATTAATTCAAATTATAAA
TTTTTATATTTGAAAATTTTGAAAAATTAAATCAATTATTTTCAAATGAT
GAATAATTTTTCTTAATATTTTTCATAGATACAAAATGAAGAAATACATG
AAGGACATGATTCAACAAGCTGAATATGAATGGCAAAAACAGAAGAACGA
TCGTTACAATCCAATGCACTCACCACATCGGAAACTCTCAGCTTCAAGTC
CTCCATATCACAACCCTCACAGATCCTCATACTATAGTCGCCCATCATAT
CTATCAACTCCACCCTCCTTTCATCGCCCCCGCCCTTATCCACCAAGAAG
CAGTATCTCAGATTACACGCCCTCCTCGTCAATATCCAGTTATCCATCAA
CGCCAAGCACGCCCCAAGAATCACCCCGTAAATCACCCTATTGGTCTTCA
AGCAACAGTTGCCCGCCCTCTTTATCACTTTCTACTTCTACTGATAAACT
TGTTTTCAACTTCAAGAAGGATGACCTATACAAACATTCACCTACTAATT
CGTTGAGATCTTCAGGGCATTCAAGTTTTGGACCTCACGAACATTTAAAG
AAAAAATGGTGTAGTTGCTGTCCTCCAAATATAGAGCGTCCATGAAATGC
TGAGACAGCAAAAAATTATCAGAATTAAAAACGAAAATATTTCGCCTGTT
TTACCCCAAAAATTATTTGCGCTGTGTCAGCAGAAAAATAGGCTTTATAA
ATAAGTTTTCAACGTGTTTTAACGTTTTTTGTTGCAGTTTTTTTAAAATT
GCGTTAAATCATATTGTTTTGTATTTAAAAGTAGAGTTTATATGTAGCAA
ATATATTTATGTTGTGCAATATTTTTAAAGAAAAATGAATATTAACTAAA
TACAATAACATATCATAAGTAAATAATATAATATTGAGTAAAAATATAGT
CTACATCTACCATATGTGAGAATATGTTATATTTAGAATATCCTTTTGTT
GTAAATAGTGTATATAGTATACAAAATAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070248-exon-scaffold_516-1575043694:401669..402028 | TCONS_00070248-exon-scaffold_516-1575043694:401669..402028 | Clytia hemisphaerica | exon |
| TCONS_00070248-exon-scaffold_516-1575043694:399213..399426 | TCONS_00070248-exon-scaffold_516-1575043694:399213..399426 | Clytia hemisphaerica | exon |
| TCONS_00070248-exon-scaffold_516-1575043694:397097..398000 | TCONS_00070248-exon-scaffold_516-1575043694:397097..398000 | Clytia hemisphaerica | exon |
| TCONS_00070248-exon-scaffold_516-1510915933:401669..402028 | TCONS_00070248-exon-scaffold_516-1510915933:401669..402028 | Clytia hemisphaerica | exon |
| TCONS_00070248-exon-scaffold_516-1510915933:399213..399426 | TCONS_00070248-exon-scaffold_516-1510915933:399213..399426 | Clytia hemisphaerica | exon |
| TCONS_00070248-exon-scaffold_516-1510915933:397097..398000 | TCONS_00070248-exon-scaffold_516-1510915933:397097..398000 | Clytia hemisphaerica | exon |
| TCONS_00070248-exon-scaffold_516-1491911889:401669..402028 | TCONS_00070248-exon-scaffold_516-1491911889:401669..402028 | Clytia hemisphaerica | exon |
| TCONS_00070248-exon-scaffold_516-1491911889:399213..399426 | TCONS_00070248-exon-scaffold_516-1491911889:399213..399426 | Clytia hemisphaerica | exon |
| TCONS_00070248-exon-scaffold_516-1491911889:397097..398000 | TCONS_00070248-exon-scaffold_516-1491911889:397097..398000 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_516 | supercontig | scaffold_516:397097..402028 - |
Blast
BLAST of TCONS_00070248 vs. Swiss-Prot (Human)
Match: NKX21 (Homeobox protein Nkx-2.1 OS=Homo sapiens GN=NKX2-1 PE=1 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 8.374e-22 Identity = 42/61 (68.85%), Postives = 52/61 (85.25%), Query Frame = 3
Query: 420 KKRRILFTRQQTWELERIFRQQPYLSSPEREVLAKKINLTPTQIKIWFQNHRYKMKKYMKD 602
+KRR+LF++ Q +ELER F+QQ YLS+PERE LA I+LTPTQ+KIWFQNHRYKMK+ KD
Sbjct: 162 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKD 222
The following BLAST results are available for this feature:
|
