TCONS_00070230 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070230
Unique NameTCONS_00070230
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1816

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070230 ID=TCONS_00070230|Name=TCONS_00070230|organism=Clytia hemisphaerica|type=transcript|length=1816bp
atttttcagggaAATGGTACTGATTATCCATGGTTTTCGATCACAAGTTT
CAGCATTACAAttcGAATGGGCATGGCAAAACCCTCTGAAATCAAAGCGC
TTAAATCATATGAAGAAACTGAGAggggaaaagaaatttgatttgaaatt
gagAGCATTAAGTGAAATGTTGAACACCGGACCTTGGAATCGTTTACCCC
TCACCATCCAATGGTTGAAACAAGAATATCAACAGAATTTCCCTGTCAAT
AAACCACCACCTATTCACATGCCCATTGCTTATGGACCCCTACGTTTTGC
AAAAGAAACCTCACAAAATACACATGAAAACGTGCAAAAAGAGACATCAA
aactttgttatttttgtaataACGAGAAAGAAGGAACTAAggaAGAGAAG
TATCTTTCTTGTATCGTCAAAAGTTGTGAATATGTTGGCCATATCACGTG
CTACGCTCAACACTTCCTGACAACTGATAAATCAGATGATACATGTCCTA
ATCTTCTACCTGTTTCTGGTGTATGTCCTGGATGTAAACAAGAGATATTA
TGGGGTGATTTAGTACGTCAGAGGCAGTACACTCTGGAGGAAGCTGACGA
GGGTAGTGGAGATGGCAGTGAAACTGAAGATGGTATGTTTTCAGCACCAC
CAAGCCAAGATGATGACTCCGAAAAtgagtttgatcaatttcaataaATa
agcagtttttgaaaagataaattGATGTACAACGCAGACATGTCTAGACA
GGGAAAACGTGATGTACTCTGAAAGATTAACAAATTAAaggtttaaaaaa
gttaaaagaaatATTAAGTTACTGAAATCTCTTCTAAAGAGAAATTCACA
GCGTGGCTAAATTGATTAAAAGTCGaccaaaagatgaaaattttctaACT
TACCTAACTTTCTAAAttaccaaaagtcgaccctgtcagatgcacatctt
gaaaattagtgaaTTTTGGACCTAtagtcagatatcttcagaggctaaaa
aagggaccctgaccctGTTTTGCATAGGTGTCCCCCCCCGGTATTTaacc
aaatattttcaattttcactttATTAAGTTACTGAAACTAACTTTTAACT
TCGCTAATTTCGAATATGAATTTAGAATTATCCTATATTTTTTTTCGGGC
aaaaaaatatagcaaaaaggTCAAAAGCTACTAATTGCTTAACAATGACG
GGGGTTTAGACTAAACATATGTTCAATATCTAACCTATTTTGCCACTTTT
TTTGTTACCAGCggaaaacacccctgtctccagTGACCTGGAGACATCTT
TTAAGACAGCGGGaaatgtaaaatgtaaaataccAATAGTAAAGTCTGAG
TTGCTGGTCGTATACTTCATCACTCCCCAAACTTGTCCCAGTCTCCTAGT
TCAAGTTTGCTTCTAATGTTTCTAATAGCACTCTAGGTTTTCGTGATACT
ATTCGTGTTCACGATTGGccccatcagtaaaatcaaaaagtagtgTTAGT
AGGGCTAGGTACGCGATTAATCACTTTCACCACGATTTTTCTCCACAGCC
GTAAACGACTTTAATATCCGCACCACATATTTCTTTTTTGCAATGATATT
ATGGAATTGGTATTTGTTTTTAATCGTTGGAGATTcaaatgatttctttt
tcatctAAAATCAATGAATCTTCCAGAATACTGTTATTGTGATAGTTCGA
TGGAGATGGTCTTGATAATAATAGTTTGTACATAAaacgtttcttttttt
tctcgcttaAATTCTGTTACAGTCTTTATAAAAGTTTCCTCTCTctaaaa
agttatattttgatat
Run BLAST on NCBI

protein sequence of TCONS_00070230-protein

>TCONS_00070230-protein ID=TCONS_00070230-protein|Name=TCONS_00070230-protein|organism=Clytia hemisphaerica|type=polypeptide|length=231bp
FFREMVLIIHGFRSQVSALQFEWAWQNPLKSKRLNHMKKLRGEKKFDLKL
RALSEMLNTGPWNRLPLTIQWLKQEYQQNFPVNKPPPIHMPIAYGPLRFA
KETSQNTHENVQKETSKLCYFCNNEKEGTKEEKYLSCIVKSCEYVGHITC
YAQHFLTTDKSDDTCPNLLPVSGVCPGCKQEILWGDLVRQRQYTLEEADE
GSGDGSETEDGMFSAPPSQDDDSENEFDQFQ
Run BLAST on NCBI

transcript from alignment at scaffold_516:93740..103140-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070230 ID=TCONS_00070230|Name=TCONS_00070230|organism=Clytia hemisphaerica|type=transcript|length=9401bp|location=Sequence derived from alignment at scaffold_516:93740..103140- (Clytia hemisphaerica)
ATTTTTCAGGGAAATGGTACTGATTATCCATGGTTTTCGATCACAAGTTT
CAGCATTACAAGTAAGAACATTAAATTCTTTTAAGACAATATTTTTCGGA
TTTGACTTTAAATAACTTTGCTGTATTTGCGCGAAAAGTTTCGATAGAAC
TTGTTATCTAGGCCAGCAATATAACAATGTTGTAATCCGACTTCAATTTT
GTTCTCTTGTTGTTACTCACAATGATCTCTTTATTTGTTTGTGAACAATG
TTTAACATTTTTTTATTCAAAACATACATTTTCTTTCTTGTTAGAATTAA
TCAGCATGCCAAATCGAATTAACCAACCACCACAAAAATTCTTGATTTAA
AAAAATGAGATATTGTATCATACATAGTTGGGAAGTATCGCTTACGTCAT
TCCTTATATTGACGTATTAAATTGAAATTTTTTTTAGTTCGAATGGGCAT
GGCAAAACCCTCTGAAATCAAAGCGCTTAAATCATATGAAGAAACTGAGA
GGGGAAAAGAAATTTGATTTGAAATTGAGAGCATTAAGTGAAATGTTGAA
CACCGGACCTTGGAATCGTTTACCCCTCACCATCCAATGGTTGAAACAAG
AATATCAACAGAATTTCCCTGTCAATAAACCACCACCTATTCACATGCCC
ATTGCTTATGGACCCCTACGTTTTGCAAAAGAAACCTCACAAAATACACA
TGAAAACGTGCAAAAAGAGACATCAAAACTTTGTTATTTTTGTAATAACG
AGAAAGAAGGAACTAAGGTAAATTGAATATCTTTCTGAATTTTGTAGTGA
GAAAAAATGAACAAGCTTAGTTTTTTTTTGCAAAAGCATTGACTGGCGTC
ATTCTGTCTACAAGAGGATAATAGCCATATTAAAATTCTACCCCAAATCT
CGAACAGAACTTCATAGATTATACAAACTGAATAAACATTACTATACAAG
AAAAAAAGTTGTGAACTTCTTGTATGGGCTGAATATTTTGTTGCCCTCAA
ATAAATATAGATAATATATACCTTGAGCAAAACTTACTGTAAATTTGAAA
AACGATTCAAAACTGATAATTAAATGAATTTTCCTTTTAGGAAGAGAAGT
ATCTTTCTTGTATCGTCAAAAGTTGTGAATATGTTGGCCATATCACGTGC
TACGCTCAACACTTCCTGACAACTGATAAATCAGATGATACATGTCCTAA
TCTTCTACCTGTTTCTGGTGTATGTCCTGGATGTAAACAAGAGATATTAT
GGGGTGATTTAGTACGTCAGAGGCAGTACACTCTGGAGGAAGCTGACGAG
GGTAGTGGAGATGGCAGTGAAACTGAAGATGGTATGTTTTCAGCACCACC
AAGCCAAGATGATGACTCCGAAAATGAGTTTGATCAATTTCAATAAATGT
GAGTTGATTTTACTTTTCATTTCTTTCAGTTTTTGCTTTTTTGGACAATG
CCAATGTTTTATCATAGTGTCAGCCTTGGTTTAGGTCCCAGGCAAAAATG
TTTGTTTTTTTGGTAGCCTCCATGACTTTCGACCCTTCGACACTGGAGTA
ATTCAAATGTAGATTGCGTTGCAGTTCCAAGCTACAGACAAAATATTTCG
CAAGTTTTATATAAAAAATTGCACAGGACAGGAGGGGCGCAAAATTTGTG
CAGGAGAGCAGATTTTTATGACATGTAATTTTCTATATATACCATGAATA
GATAATTACAGTGTCATAAAAATCTGCTCTCCTACACAAATTTTGCGCCC
CTCTTGGCTACGCTCTGCAAACATCACGATGAAGCATTCAGTCCCTATAC
TTAGCGATGAGATTTTAGCTATCCCAAGTACATTAGGTTCCCCCCAAAAA
AGGTGGATGACTTTCCGCCTCCTCTTTATTTTGGAATATTTTATAGTGTA
ACCCCGGATCAAAAGATTCTTAAGAATTACACAAAAAGTCTGGAGTAAAA
ATAATCTTTGTTGCATTGGCCATCATTGGTGAAAATTCATGAAGTTTTGT
CGACTAGTTGAGATATTTATACCAGATTCTTAAAGGAGACCAAACAATAG
TATCTCTTTTGGCTCTTGTTTTATTCTAGAGCGTGGCATTGGTCTTACAG
GAGACCAAAGTTTAAGTGACTCCTAGTTTCATTTCTGCATCCAAATACAC
TTCTTTTTATGTATAATTCATTATGCTACCAGATAATATTGGGTGAATAA
TTACTTAAAATTTGTGTGTATAATGAATTTACTAGAGAAAGGGTCTCAAA
TATGTATTGGGAGGCCTAAATTTTCTGCTTACATCTCGTGAAAAATAAGC
TATCAATAATATTATGCATGATATTTCAATGTAAATCAAAGATAAAAGAA
ATTTATGCCCTAAATAATGAAACGAAAAATCAATAGGTATTCTATTATTA
ATGTCTATCTTTCTTGGAAAAGGTGACAGTAACTACAAAAGCCTTCGTTT
TTCTCTTGTTATTTACATTAAGTTAGTGTCTCTTGATGCTCACTGATAAA
CATATTTCATTCAGATACCAAACACCTTCGAAATTTCTCATACCATAATG
GAGAGAATAAATTCTTTAAAACTTTAGCAGCTTGCAATGTATGGTTGATA
AAGTCGATATTTGGAACGTCGTAAATATAAACAACAGCTCGTATTCCATT
GATAAACAAATGAAGGGACAAACAAAACCATGAAACTGAATCCAATCGTT
TCAAAATGTACATCGAACGTTTTTAAGGATTCATTCGAAAATGAAAATAT
GCCAACGAAACAAAGACGGAGGCCATGTATAAAATACGATAGATTGGGTT
TGTCAGAAATACTGCAACACCGGAAACAATTAATCGTTCAAAAAGTCGCC
ATGATTCCCACCAAAAGAACTGCTCTTTGTAGGGTTCCTCAAATATTTCT
GAAAGTCTCTGGTCATTAAAATCATTCCTGTTAGATTCAGCTCCAATCCA
CTTTGAATAAAAAGTTTTCCAAATGCTCAATAAAGGGAAAGTCCAAAACA
TTAGATATGTAGTCATTGAAATATTTTTGTTTTTAAATAAATGGTAACCT
ATAACGACTGCAAACGGGAACGGAACAACCCAACATATCAAGAATAAAAT
CAAGAATAAAATATTCACAATTTGCCATGATGTAAAGCATTCAACAGTAC
CATCGATTTACAGATCCGTTCATCGTTTTACAGTTCAGTAACCTAAAGAC
TGTTCTACAAATATTTTTGTATCAAAATGCAATGCTAATACAAGAAGCCC
GTTGGGCGTGAAGGCCCAGCAAAAGTGAAATTTTCGCGATTTTCGCGAAT
TTCGGAATTTCCAAAAATTCCGAAAAAGACACGGGAAAACTTTAATTGAT
CACATTAGTAGTAATATCTCAACCAAAATCATCCATACTGATGTAATTCA
CACTGACGAAGTAAGTGATCATGATATGCCATACGTTATTGTTAACATAA
AAAAAGAACGCTTTCAACCGAGATATAAATACATTCGAGACGAAAAGAAT
TTTGACATCAATTCTTTCACATCCGACTTTCAACAACTTCCGTTATCCCT
TGTATTTAGCTTCGACGACCCCAATGATCAGATATCGATTCTCAATAAAC
TTGTATATGACTGTATCGAATCACACGCTCCATTGAAAAGAGTACGGATA
ACCAGGCCGATTGCACCGTGGATGAAAGATCCAAAAATTATTCAAGAACG
TCAATTACTCGAAGATGCACGTGCGAACNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGAAAAATATCAGGGAA
ATCAAAGACCTGAAAGAATTTATTAAAGAATCAAAATTGTTTTTTAAATC
TAGGGCACATACTCGTGCAACACAACAATAAAATTATAAATTTAAGATCT
ATTTTTACTTTATTACTTACTAAATATTTCCACTACTATTATCCACTATC
CTTTTGCTAGTCCCTATTTGATACAATCTACATTCAGCCTTTGTGTCTTA
GTTATCCAATTCCATCTCATGTCTATCTAGTGGTCTAGTTTTAATAAAAT
TTTATTCAGAAAATTTGTAAAAATATTTATATTTATTAATACTATTTATT
CTTTAGTGCTTTTTATTTTGATATTTATGTTTAGGGGGAAGANNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCCTA
AAAATGTTTAACAAGATTTCAAATTTCCCCCAGGAAAGGGATGGCCAAAG
GATTTTAAATTTTACTGCGTCGAGCAAAACAAAATGAAAAACAAGCCGAC
AATTATAATTCTCCCTTTCTTCATTTCTTAGAACAGGGAAAAGAAAAAAT
AAACGAAACATAATGTAGTCAATCAAAAATGAATTGAATGTTGAAAGCTC
GAAACTTTCTGCCCGAAGGTAAACAATCAAATTCAAAATATCATTAAATT
CAGCTTCCATAACAAACAACATCAAAAAATGGTGCCACAGCGATTTATTG
AGCTTCTTCGTTGTATTGAGCTTGTTCGTTGTATTGTCTTTGTTCATCTT
CTCCCTCTTTCCTCCAACAAGGTCAATTCGACTTGAAAACAATTATGTGA
GTCGAGTTTGAATAATCCAAGCCATCGACCGTTAAACGACAGCTCCAGAA
ATGACCATTTCATTTAATGTGTAGCATCACGAAAAAAGTTCCAATCTTGT
TCAAATTTACACATGAGCTGCATTTTAGTCTCCATTTACTAAAATTAGTA
TTTGAAATAATTCTGTGTCGAGTTTGTAAAGTCAAGCCACCAATTCGTTA
AACGAGACAGATCCAGAAACAACAAAATCGGGTGTTTGAGAGGGCCCCTC
CCCCCCCCTTAGAGTCCGCAAAGCCTTGAAATGTTCTTTTAACTTGTTCT
TAATATTTTGGCCATCAAAACCTTATGTTCTTTTATAGTTTGTTCTTATA
AAAAACGTGTATTAAATGTAACAGAAAATTCCATAATTTGTTGGATACAG
TGTGTCCCAAAAAGACGGACAAATCTTTACATAAAGTGAATTCCTCAAAA
CATACCGGGTGCGCCACAAAAAAGTTTCTCTCCTTAAAACTAACTTTCTA
GAAATCCAAAAATTTTGAAAGAACCATTCCTATTTCATTGGAAAGAAGAA
AGATAAACTTAAATTTGGATGGGTCATTTATTAAATTCGTTTCATTAGAT
CAAAAGTTATGCTTAGTTGAATAAAAAAGTTACTTTCAGAAAGTGCTCGA
AAACGTTGAAAATCGACCTATCAAATTTTTATATTAAAATTGTCAAGCGC
AATAGCCTTTACATGATTAAAAGTATTTAAATAAATTTCGAAACTGAAAG
CCCGAAAGGGTTTAAAATCTTCATCAAAATCACTTTAATTTACTTTTACC
GAAATTTTCCTCCGATTTTTGGTTTTAAATTGGATAAAGCCTATGTAAGG
CTGGATTTATCTCGAAACCCATATTTGATATAGATAATGATGTATCATGT
AATTATGCTTCTGTTTAATTTGATAGGTCGATTTTTAACGTTTTTGAGCA
CTTTCAGAAAGTAACTTTTTTATTTAATTGAGCATAACTTTTGATGTAAT
GGATCGAATTTAATAAATGACCCATTAAAATTTAAGTTTATCTTTCTTCT
TTCCAATGAAATAGGAACGGTTTTTAAAAAAATTTTATATTTCGAGAAAA
TTAGTTTCAAAGAGAGAAACTTTTTTGTGGCGCAACCGGTAGAAAATTCC
AATAAGAGTTATAAAATTCACAAAATCTTCCAATTTTTCCTCCTTTTATT
AAGCCCCACTAAGGGTAATAGGGTCGAAAGTCGGGCGGTACATATCCGTC
CGCTCGCAACGCTAGTACCACCCCCCCCCGGATTTGTCCGTTTTTTTCGG
TACACGCTGTAGTTGAGACAGAACTTTTGTATGGTATATGGCAAATAATG
GAAATTCACTCTTAGGTTAAAGACCTTTAAAGAAACTAATTGGAATTCAG
TTGGTAGGTAAATCAGAAAAATAACTTTATCCTAGTATAAAAAACTTGTT
CTGATTTCTCTTAACAACAACTGGAGAATTCACTCTAATTAAAAGGTCTC
AAATTAGTTTCAAGGCCTAAAACTATAAACGGGCTAAAAAAATGAATGAT
TCTGAAGATTATAAGATTTGTATTAATTATTTAGAAGCAGTTTTTGAAAA
GATAAATTGATGTACAACGCAGACATGTCTAGACAGGGAAAACGTGATGT
ACTCTGAAAGATTAACAAATTAAAGGTTTAAAAAAGTTAAAAGAAATATT
AAGTTACTGAAATCTCTTCTAAAGAGAAATTCACAGCGTGGCTAAATTGA
TTAAAAGTCGACCAAAAGATGAAAATTTTCTAACTTACCTAACTTTCTAA
ATTACCAAAAGTCGACCCTGTCAGATGCACATCTTGAAAATTAGTGAATT
TTGGACCTATAGTCAGATATCTTCAGAGGCTAAAAAAGGGACCCTGACCC
TGTTTTGCATAGGTGTCCCCCCCCGGTATTTAACCAAATATTTTCAATTT
TCACTTTATTAAGTTACTGAAACTAACTTTTAACTTCGCTAATTTCGAAT
ATGAATTTAGAATTATCCTATATTTTTTTTCGGGCAAAAAAATATAGCAA
AAAGGTCAAAAGCTACTAATTGCTTAACAATGACGGGGGTTTAGACTAAA
CATATGTTCAATATCTAACCTATTTTGCCACTTTTTTTGTTACCAGCGGA
AAACACCCCTGTCTCCAGTGACCTGGAGACATCTTTTAAGACAGCGGGAA
ATGTAAAATGTAAAATACCAATAGTAAAGTCTGAGTTGCTGGTCGTATAC
TTCATCACTCCCCAAACTTGTCCCAGTCTCCTAGTTCAAGTTTGCTTCTA
ATGTTTCTAATAGCACTCTAGGTTTTCGTGATACTATTCGTGTTCACGAT
TGGCCCCATCAGTAAAATCAAAAAGTAGTGTTAGTAGGGCTAGGTACGCG
ATTAATCACTTTCACCACGATTTTTCTCCACAGCCGTAAACGACTTTAAT
ATCCGCACCACATATTTCTTTTTTGCAATGATATTATGGAATTGGTATTT
GTTTTTAATCGTTGGAGATTCAAATGATTTCTTTTTCATCTAAAATCAAT
GAATCTTCCAGAATACTGTTATTGTGATAGTTCGATGGAGATGGTCTTGA
TAATAATAGTTTGTACATAAAACGTTTCTTTTTTTTCTCGCTTAAATTCT
GTTACAGTCTTTATAAAAGTTTCCTCTCTCTAAAAAGTTATATTTTGATA
T

Coding sequence (CDS) from alignment at scaffold_516:93740..103140-

>TCONS_00070230 ID=TCONS_00070230|Name=TCONS_00070230|organism=Clytia hemisphaerica|type=CDS|length=2088bp|location=Sequence derived from alignment at scaffold_516:93740..103140- (Clytia hemisphaerica)
GAAGAGAAGTATCTTTCTTGTATCGTCAAAAGTTGTGAATATGTTGGCCA
TATCACGTGCTACGCTCAACACTTCCTGACAACTGATAAATCAGATGATA
CATGTCCTAATCTTCTACCTGTTTCTGGTGTATGTCCTGGATGTAAACAA
GAGATATTATGGGGTGATTTAGTACGTCAGAGGCAGTACACTCTGGAGGA
AGCTGACGAGGGTAGTGGAGATGGCAGTGAAACTGAAGATGGTATGTTTT
CAGCACCACCAAGCCAAGATGATGACTCCGAAAATGAGTTTGATCAATTT
CAATAATTCGAATGGGCATGGCAAAACCCTCTGAAATCAAAGCGCTTAAA
TCATATGAAGAAACTGAGAGGGGAAAAGAAATTTGATTTGAAATTGAGAG
CATTAAGTGAAATGTTGAACACCGGACCTTGGAATCGTTTACCCCTCACC
ATCCAATGGTTGAAACAAGAATATCAACAGAATTTCCCTGTCAATAAACC
ACCACCTATTCACATGCCCATTGCTTATGGACCCCTACGTTTTGCAAAAG
AAACCTCACAAAATACACATGAAAACGTGCAAAAAGAGACATCAAAACTT
TGTTATTTTTGTAATAACGAGAAAGAAGGAACTAAGTTTTTCAGGGAAAT
GGTACTGATTATCCATGGTTTTCGATCACAAGTTTCAGCATTACAAGAAG
AGAAGTATCTTTCTTGTATCGTCAAAAGTTGTGAATATGTTGGCCATATC
ACGTGCTACGCTCAACACTTCCTGACAACTGATAAATCAGATGATACATG
TCCTAATCTTCTACCTGTTTCTGGTGTATGTCCTGGATGTAAACAAGAGA
TATTATGGGGTGATTTAGTACGTCAGAGGCAGTACACTCTGGAGGAAGCT
GACGAGGGTAGTGGAGATGGCAGTGAAACTGAAGATGGTATGTTTTCAGC
ACCACCAAGCCAAGATGATGACTCCGAAAATGAGTTTGATCAATTTCAAT
AATTCGAATGGGCATGGCAAAACCCTCTGAAATCAAAGCGCTTAAATCAT
ATGAAGAAACTGAGAGGGGAAAAGAAATTTGATTTGAAATTGAGAGCATT
AAGTGAAATGTTGAACACCGGACCTTGGAATCGTTTACCCCTCACCATCC
AATGGTTGAAACAAGAATATCAACAGAATTTCCCTGTCAATAAACCACCA
CCTATTCACATGCCCATTGCTTATGGACCCCTACGTTTTGCAAAAGAAAC
CTCACAAAATACACATGAAAACGTGCAAAAAGAGACATCAAAACTTTGTT
ATTTTTGTAATAACGAGAAAGAAGGAACTAAGTTTTTCAGGGAAATGGTA
CTGATTATCCATGGTTTTCGATCACAAGTTTCAGCATTACAAGAAGAGAA
GTATCTTTCTTGTATCGTCAAAAGTTGTGAATATGTTGGCCATATCACGT
GCTACGCTCAACACTTCCTGACAACTGATAAATCAGATGATACATGTCCT
AATCTTCTACCTGTTTCTGGTGTATGTCCTGGATGTAAACAAGAGATATT
ATGGGGTGATTTAGTACGTCAGAGGCAGTACACTCTGGAGGAAGCTGACG
AGGGTAGTGGAGATGGCAGTGAAACTGAAGATGGTATGTTTTCAGCACCA
CCAAGCCAAGATGATGACTCCGAAAATGAGTTTGATCAATTTCAATAATT
CGAATGGGCATGGCAAAACCCTCTGAAATCAAAGCGCTTAAATCATATGA
AGAAACTGAGAGGGGAAAAGAAATTTGATTTGAAATTGAGAGCATTAAGT
GAAATGTTGAACACCGGACCTTGGAATCGTTTACCCCTCACCATCCAATG
GTTGAAACAAGAATATCAACAGAATTTCCCTGTCAATAAACCACCACCTA
TTCACATGCCCATTGCTTATGGACCCCTACGTTTTGCAAAAGAAACCTCA
CAAAATACACATGAAAACGTGCAAAAAGAGACATCAAAACTTTGTTATTT
TTGTAATAACGAGAAAGAAGGAACTAAGTTTTTCAGGGAAATGGTACTGA
TTATCCATGGTTTTCGATCACAAGTTTCAGCATTACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043735XLOC_043735Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070230-proteinTCONS_00070230-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070230-exon-scaffold_516-1575043694:103080..103140TCONS_00070230-exon-scaffold_516-1575043694:103080..103140Clytia hemisphaericaexon
TCONS_00070230-exon-scaffold_516-1575043694:102374..102703TCONS_00070230-exon-scaffold_516-1575043694:102374..102703Clytia hemisphaericaexon
TCONS_00070230-exon-scaffold_516-1575043694:101743..102050TCONS_00070230-exon-scaffold_516-1575043694:101743..102050Clytia hemisphaericaexon
TCONS_00070230-exon-scaffold_516-1575043694:93740..94856TCONS_00070230-exon-scaffold_516-1575043694:93740..94856Clytia hemisphaericaexon
TCONS_00070230-exon-scaffold_516-1510915933:103080..103140TCONS_00070230-exon-scaffold_516-1510915933:103080..103140Clytia hemisphaericaexon
TCONS_00070230-exon-scaffold_516-1510915933:102374..102703TCONS_00070230-exon-scaffold_516-1510915933:102374..102703Clytia hemisphaericaexon
TCONS_00070230-exon-scaffold_516-1510915933:101743..102050TCONS_00070230-exon-scaffold_516-1510915933:101743..102050Clytia hemisphaericaexon
TCONS_00070230-exon-scaffold_516-1510915933:93740..94856TCONS_00070230-exon-scaffold_516-1510915933:93740..94856Clytia hemisphaericaexon
TCONS_00070230-exon-scaffold_516-1491911889:103080..103140TCONS_00070230-exon-scaffold_516-1491911889:103080..103140Clytia hemisphaericaexon
TCONS_00070230-exon-scaffold_516-1491911889:102374..102703TCONS_00070230-exon-scaffold_516-1491911889:102374..102703Clytia hemisphaericaexon
TCONS_00070230-exon-scaffold_516-1491911889:101743..102050TCONS_00070230-exon-scaffold_516-1491911889:101743..102050Clytia hemisphaericaexon
TCONS_00070230-exon-scaffold_516-1491911889:93740..94856TCONS_00070230-exon-scaffold_516-1491911889:93740..94856Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_516supercontigscaffold_516:93740..103140 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.58019	9.64352	7.28819	6.13612	1.17772	0.900573	2.45181	2.58539	2.47108	2.00427	1.12186	1.08623	0.995208	0.599784	1.11329	1.26548	1.46721	1.17504	0.472704	0.4555	1.22612	1.32068	6.12148	5.67746	1.69394	2.05985	0.751841	0.622954	2.45751	2.95358
Blast
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BLAST of TCONS_00070230 vs. Swiss-Prot (Human)
Match: SLX1 (Structure-specific endonuclease subunit SLX1 OS=Homo sapiens GN=SLX1A PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.225e-36
Identity = 75/194 (38.66%), Postives = 105/194 (54.12%), Query Frame = 2 
Query:   11 EMVLIIHGFRSQVSALQFEWAWQNPLKSKRLNHMK-KLRGEKKFDLKLRALSEMLNTGPWNRLPLTIQWLKQEYQQNFPVNKPPPIHMPIAYGPLRFAKET--------SQNTHENVQKETSKLCYFCNNEKEGTKEEKYLSCIVKSCEYVGHITCYAQHFLTTDKSDDTCPNLLPVSGVCPGCKQEILWGDLV 565
            EMVL++HGF S V+AL+FEWAWQ+P  S+RL H+  +LRGE  F   LR L+ ML   PW RLPLT++W++ + +Q+  +  PPP H+P+A+GP                    E  Q +    C  C    +   EE  L C    C    H+ C A+ FL  +        LLP+ G CP C++ +LWGDL+
Sbjct:   64 EMVLVVHGFPSSVAALRFEWAWQHPHASRRLAHVGPRLRGETAFAFHLRVLAHMLRAPPWARLPLTLRWVRPDLRQDLCL--PPPPHVPLAFGPPPPQAPAPRRRAGPFDDAEPEPDQGDPGACCSLCAQTIQ--DEEGPLCCPHPGCLLRAHVICLAEEFLQEEPG-----QLLPLEGQCPCCEKSLLWGDLI 248
The following BLAST results are available for this feature:
BLAST of TCONS_00070230 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SLX11.225e-3638.66Structure-specific endonuclease subunit SLX1 OS=Ho... [more]
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