TCONS_00070219 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070219
Unique NameTCONS_00070219
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1293

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070219 ID=TCONS_00070219|Name=TCONS_00070219|organism=Clytia hemisphaerica|type=transcript|length=1293bp
CctttaaaattataaattatcgTCTCAAACAAAAGTAGtaatttaaagtt
attttttattttagtcaATTCtctgaataaaaaacaaaaataataaaatg
gcTGACTTATTAGGAGATGACCCAGCTGCTGAATTCTTACAGCAAGAAGA
AGATCAACTTCGTGAACTTGGGATTGATGAAAACCAATTCGGTGAGGATG
GAGCACCACCTCCTGACAATGGCGGTGCTGATATAATGGGTCAATTTGAG
GATTTAGGTAATGCACCAATCGATGATGGAGCTCCACAAGAACCCGTGAT
GAATGGATTTACAGAACCTGCACCAGCTCCGATCATCCCTATTCAACCTG
CCGAGGAACCAGAATCTTTAAAACAATGGCGCGAAGAAAAAGCTGACTCA
CTTCAAAAACAGGAGGAAGAAGAAGTGGAGAACCATCAACAATGGACAGA
ACGTGCCAAGAAAGAATTAGACGACTGGTACAACCATTACAATGAACAAC
TCGATAAAACCAAAACGGAAAACAGATCGGCCGAAGAGCAATTCATTGAA
GAAATGACCGATACGAAGCCAGGCAACGAATGGGAGAAAGTATCCAGATT
CTGTGATTTCAACcctaaaaatagtaaaaatacaAAGGATGTTGGACGCA
TGAGAAGCATCTTGTTACAATTGAAACAAAACCCATTAATTCGATAGACT
CTACATTCACCTTTTTATCTCATCTCACCTTATATCAGGTATGCTCTCTA
TGGTGAACATTTTATAGATAGTCTTGTGATTTATAGTTTTTCCATTACGA
TTACCTTTCTGAGGTCCTTTTTTTGctaatttcacttttttgtttgtttg
tttcaatttgTAACATATATATAATGGCGggtatataatttttattttta
ctactGTAGACATTTTTGCTAATTCTCTTTTGTTCTCTCTTGACATTCTC
TGAAATGATTATTCGAAATCTTGATTAAATGTGTGTTATCATCTGCCTAT
AGAGTTGTTAAAATTCAATTCCTGTAAGTTTCTAATGGTTCATCAAAGTT
TCAGCATCAAAGAAATGTGAAACTAactaaacttttgttttttatttacc
aTGGCTGAATCATATCATTGATTGGAATTTAATTTAAATTATCGTTTTAA
TAGAAAATACAACAATCCAAAAATGTAAACACTTTATCAACTTCAGTCTA
GAGGCTTCCTTTTTCAaatcagatgagatggagtttaatactttaataat
tggtcatttgaagtaataaaaatgacgaattctttagaaaaag
Run BLAST on NCBI

protein sequence of TCONS_00070219-protein

>TCONS_00070219-protein ID=TCONS_00070219-protein|Name=TCONS_00070219-protein|organism=Clytia hemisphaerica|type=polypeptide|length=199bp
MADLLGDDPAAEFLQQEEDQLRELGIDENQFGEDGAPPPDNGGADIMGQF
EDLGNAPIDDGAPQEPVMNGFTEPAPAPIIPIQPAEEPESLKQWREEKAD
SLQKQEEEEVENHQQWTERAKKELDDWYNHYNEQLDKTKTENRSAEEQFI
EEMTDTKPGNEWEKVSRFCDFNPKNSKNTKDVGRMRSILLQLKQNPLIR
Run BLAST on NCBI

transcript from alignment at scaffold_516:364876..367025+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070219 ID=TCONS_00070219|Name=TCONS_00070219|organism=Clytia hemisphaerica|type=transcript|length=2150bp|location=Sequence derived from alignment at scaffold_516:364876..367025+ (Clytia hemisphaerica)
CctttaaaattataaattatcgTCTCAAACAAAAGTAGtaatttaaagtt
attttttattttagtcaATTCtctgaataaaaaacaaaaataataaaatg
gcTGACTTATTAGGAGATGACCCAGCTGCTGAATTCTTACAGCAAGAAGA
AGATCAACTTCGTGAACTTGGGATTGATGAAAACCAATTCGGTGAGGATG
GAGCACCACCTCCTGACAATGGCGGTGCTGATATAATGGGTCAATTTGAG
GATTTAGGTAATGCACCAATCGATGATGGAGCTCCACAAGAACCCGTGAT
GAATGGATTTACAGAACCTGCACCAGCTCCGATCATCCCTATTCAACCTG
CCGAGGAACCAGAATCTTTAAAACAATGGCGCGAAGAAAAAGCTGACTCA
CTTCAAAAACAGGTAAATTTCTATTCTTTAACATTATTTGATTATGATTA
TGGTTTACTTCTTGATTATATGGGGTAGGTTAATTAAGATTTGGCCAAAG
AAGATTAAAAGTAAGGAATAAAGGATCTTTAAATACCTTGAAGAGAAGAC
ATTTCGGTGTGCGGGACAATTTGCCAATTTTCGAACAATACACatgttgc
aaaattaaagtcttcagacaaatcacgcttttactcgaaatttttatgtg
cttactgcatgacatttatttctgattggttcggtCGGATTTATTGGCAC
TAATAAATTTATctgctgtaagttgtaaagcaagtaacatgggaataaaa
tcacgttaacttttttcgagtaatcacatgtttcggttgcactgatataa
ttttgcaacccgtgtatttaTTTTGGCTAACTAGGAAACTTctttaaatt
tggcgagaattagtTTTGGCAAATTACCCTttattttgttagtttttttg
cTGAGAAAAGGAGAAATGAGGGTCTTTTTAGGGAAAATCTGGACTAAGTT
GAACAacaattaaatttggcgagaaatAATTTTGACGTATGACCATCCaa
tctaaatttaattttggaatCAGTTCATTTTATATAATAACTTAAGTGAC
AACAAATTCTAaaggggaaattttgaaaaacatcgTACTCACCCAAAACA
ATGGGATTTCTATGTGAAAATTATTCAACCCTGTTATCATATTCCTAACT
GTCTGCCTCAGAATTTACACCCTACCCTGTCTTCTACCTGCTTCTACAAG
TCAAGAATTTTCCCAAATTGTGTTGCTTTAAGTCTTATCTTTCTCATATT
CTTCATCTTCTTTCAACAGGAGGAAGAAGAAGTGGAGAACCATCAACAAT
GGACAGAACGTGCCAAGAAAGAATTAGACGACTGGTACAACCATTACAAT
GAACAACTCGATAAAACCAAAACGGAAAACAGATCGGCCGAAGAGCAATT
CATTGAAGAAATGACCGATACGAAGCCAGGCAACGAATGGGAGAAAGTAT
CCAGATTCTGTGATTTCAACcctaaaaatagtaaaaatacaAAGGATGTT
GGACGCATGAGAAGCATCTTGTTACAATTGAAACAAAACCCATTAATTCG
ATAGACTCTACATTCACCTTTTTATCTCATCTCACCTTATATCAGGTATG
CTCTCTATGGTGAACATTTTATAGATAGTCTTGTGATTTATAGTTTTTCC
ATTACGATTACCTTTCTGAGGTCCTTTTTTTGctaatttcacttttttgt
ttgtttgtttcaatttgTAACATATATATAATGGCGggtatataattttt
atttttactactGTAGACATTTTTGCTAATTCTCTTTTGTTCTCTCTTGA
CATTCTCTGAAATGATTATTCGAAATCTTGATTAAATGTGTGTTATCATC
TGCCTATAGAGTTGTTAAAATTCAATTCCTGTAAGTTTCTAATGGTTCAT
CAAAGTTTCAGCATCAAAGAAATGTGAAACTAactaaacttttgtttttt
atttaccaTGGCTGAATCATATCATTGATTGGAATTTAATTTAAATTATC
GTTTTAATAGAAAATACAACAATCCAAAAATGTAAACACTTTATCAACTT
CAGTCTAGAGGCTTCCTTTTTCAaatcagatgagatggagtttaatactt
taataattggtcatttgaagtaataaaaatgacgaattctttagaaaaag

Coding sequence (CDS) from alignment at scaffold_516:364876..367025+

>TCONS_00070219 ID=TCONS_00070219|Name=TCONS_00070219|organism=Clytia hemisphaerica|type=CDS|length=1200bp|location=Sequence derived from alignment at scaffold_516:364876..367025+ (Clytia hemisphaerica)
atggcTGACTTATTAGGAGATGACCCAGCTGCTGAATTCTTACAGCAAGA
AGAAGATCAACTTCGTGAACTTGGGATTGATGAAAACCAATTCGGTGAGG
ATGGAGCACCACCTCCTGACAATGGCGGTGCTGATATAATGGGTCAATTT
GAGGATTTAGGTAATGCACCAATCGATGATGGAGCTCCACAAGAACCCGT
GATGAATGGATTTACAGAACCTGCACCAGCTCCGATCATCCCTATTCAAC
CTGCCGAGGAACCAGAATCTTTAAAACAATGGCGCGAAGAAAAAGCTGAC
TCACTTCAAAAACAGGAGGAAGAAGAAGTGGAGAACCATCAACAATGGAC
AGAACGTGCCAAGAAAGAATTAGACGACTGGTACAACCATTACAATGAAC
AACTCGATAAAACCAAAACGGAAAACAGATCGGCCGAAGAGCAATTCATT
GAAGAAATGACCGATACGAAGCCAGGCAACGAATGGGAGAAAGTATCCAG
ATTCTGTGATTTCAACcctaaaaatagtaaaaatacaAAGGATGTTGGAC
GCATGAGAAGCATCTTGTTACAATTGAAACAAAACCCATTAATTCGATAG
atggcTGACTTATTAGGAGATGACCCAGCTGCTGAATTCTTACAGCAAGA
AGAAGATCAACTTCGTGAACTTGGGATTGATGAAAACCAATTCGGTGAGG
ATGGAGCACCACCTCCTGACAATGGCGGTGCTGATATAATGGGTCAATTT
GAGGATTTAGGTAATGCACCAATCGATGATGGAGCTCCACAAGAACCCGT
GATGAATGGATTTACAGAACCTGCACCAGCTCCGATCATCCCTATTCAAC
CTGCCGAGGAACCAGAATCTTTAAAACAATGGCGCGAAGAAAAAGCTGAC
TCACTTCAAAAACAGGAGGAAGAAGAAGTGGAGAACCATCAACAATGGAC
AGAACGTGCCAAGAAAGAATTAGACGACTGGTACAACCATTACAATGAAC
AACTCGATAAAACCAAAACGGAAAACAGATCGGCCGAAGAGCAATTCATT
GAAGAAATGACCGATACGAAGCCAGGCAACGAATGGGAGAAAGTATCCAG
ATTCTGTGATTTCAACcctaaaaatagtaaaaatacaAAGGATGTTGGAC
GCATGAGAAGCATCTTGTTACAATTGAAACAAAACCCATTAATTCGATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043728XLOC_043728Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070219-proteinTCONS_00070219-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070219-exon-scaffold_516-1491911889:364876..365287TCONS_00070219-exon-scaffold_516-1491911889:364876..365287Clytia hemisphaericaexon
TCONS_00070219-exon-scaffold_516-1510915933:364876..365287TCONS_00070219-exon-scaffold_516-1510915933:364876..365287Clytia hemisphaericaexon
TCONS_00070219-exon-scaffold_516-1575043694:364876..365287TCONS_00070219-exon-scaffold_516-1575043694:364876..365287Clytia hemisphaericaexon
TCONS_00070219-exon-scaffold_516-1491911889:366145..367025TCONS_00070219-exon-scaffold_516-1491911889:366145..367025Clytia hemisphaericaexon
TCONS_00070219-exon-scaffold_516-1510915933:366145..367025TCONS_00070219-exon-scaffold_516-1510915933:366145..367025Clytia hemisphaericaexon
TCONS_00070219-exon-scaffold_516-1575043694:366145..367025TCONS_00070219-exon-scaffold_516-1575043694:366145..367025Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_516supercontigscaffold_516:364876..367025 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
372.257	388.538	390.249	400.774	363.153	277.796	443.861	454.968	418.149	396.044	278.436	315.156	195.469	195.415	237.259	254.051	279.441	270.797	175.968	163.636	237.225	226.287	233.935	223.361	159.075	162.304	318.525	269.707	304.351	235.939
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR032675L_dom-like
IPR000996Clathrin_L-chain
Vocabulary: Cellular Component
TermDefinition
GO:0030132clathrin coat of coated pit
GO:0030130clathrin coat of trans-Golgi network vesicle
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
GO:0006886intracellular protein transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0030132 clathrin coat of coated pit
cellular_component GO:0030130 clathrin coat of trans-Golgi network vesicle
molecular_function GO:0005198 structural molecule activity
Blast
[Close]
BLAST of TCONS_00070219 vs. Swiss-Prot (Human)
Match: CLCA (Clathrin light chain A OS=Homo sapiens GN=CLTA PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.464e-30
Identity = 80/234 (34.19%), Postives = 115/234 (49.15%), Query Frame = 2 
Query:  116 DDPAAEFLQQEEDQLRELGIDEN-QFGEDGAPPPDN-----GGADIM-----GQFEDLGNAPIDDGAPQEPVMNGFTXXXXXXXXXXXXXXXXXSLKQWREEKADSLQKQEEEEVENHQQWTERAKKELDDWYNHYNEQLDKTKTENR------------------------------SAEEQFIEEMTDTKPGNEWEKVSRFCDFNPKNSKNTKDVGRMRSILLQLKQNPLIR 694
            +DPAA FL Q+E ++  +  DE     + GAP P       GG D +     G++    N P D  A    V               +   EPES+++WREE+ + L+  +    +   +W E+A KEL++WY   +EQL KTK  NR                              +AEE F+ ++ ++ PG EWE+V+R CDFNPK+SK  KDV RMRS+L+ LKQ PL+ 
Sbjct:   29 EDPAAAFLAQQESEIAGIENDEAFAILDGGAPGPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQV--------------DRLQSEPESIRKWREEQMERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYVTNINHPCYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 248
The following BLAST results are available for this feature:
BLAST of TCONS_00070219 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CLCA5.464e-3034.19Clathrin light chain A OS=Homo sapiens GN=CLTA PE=... [more]
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