TCONS_00070219-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00070219-protein
Unique NameTCONS_00070219-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length199

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00070219-protein ID=TCONS_00070219-protein|Name=TCONS_00070219-protein|organism=Clytia hemisphaerica|type=polypeptide|length=199bp
MADLLGDDPAAEFLQQEEDQLRELGIDENQFGEDGAPPPDNGGADIMGQF
EDLGNAPIDDGAPQEPVMNGFTEPAPAPIIPIQPAEEPESLKQWREEKAD
SLQKQEEEEVENHQQWTERAKKELDDWYNHYNEQLDKTKTENRSAEEQFI
EEMTDTKPGNEWEKVSRFCDFNPKNSKNTKDVGRMRSILLQLKQNPLIR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_043728XLOC_043728Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00070219TCONS_00070219Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675L_dom-like
IPR000996Clathrin_L-chain
Vocabulary: Cellular Component
TermDefinition
GO:0030132clathrin coat of coated pit
GO:0030130clathrin coat of trans-Golgi network vesicle
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
GO:0006886intracellular protein transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0030132 clathrin coat of coated pit
cellular_component GO:0030130 clathrin coat of trans-Golgi network vesicle
molecular_function GO:0005198 structural molecule activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 128..148
NoneNo IPR availableCOILSCoilCoilcoord: 91..119
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..114
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 10..166
e-value: 0.0018
score: 16.5
IPR000996Clathrin light chainPFAMPF01086Clathrin_lg_chcoord: 7..196
e-value: 1.4E-46
score: 159.3

Blast
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BLAST of TCONS_00070219-protein vs. Swiss-Prot (Human)
Match: CLCA (Clathrin light chain A OS=Homo sapiens GN=CLTA PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 3.186e-35
Identity = 79/234 (33.76%), Postives = 115/234 (49.15%), Query Frame = 0 
Query:    7 DDPAAEFLQQEEDQLRELGIDENQFGEDGAPP-----------PDNGGADIMGQFEDLGNAPIDDGAPQEPVMNGFTEPAPAPIIPIQPAEEPESLKQWREEKADSLQKQEEEEVENHQQWTERAKKELDDWYNHYNEQLDKTKTENR------------------------------SAEEQFIEEMTDTKPGNEWEKVSRFCDFNPKNSKNTKDVGRMRSILLQLKQNPLIR 199
            +DPAA FL Q+E ++  +  DE     DG  P           PD     + G++    N P D  A            A + +  +Q   EPES+++WREE+ + L+  +    +   +W E+A KEL++WY   +EQL KTK  NR                              +AEE F+ ++ ++ PG EWE+V+R CDFNPK+SK  KDV RMRS+L+ LKQ PL+ 
Sbjct:   29 EDPAAAFLAQQESEIAGIENDEAFAILDGGAPGPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYA------------AISQVDRLQ--SEPESIRKWREEQMERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYVTNINHPCYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 248
The following BLAST results are available for this feature:
BLAST of TCONS_00070219-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CLCA3.186e-3533.76Clathrin light chain A OS=Homo sapiens GN=CLTA PE=... [more]
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