TCONS_00070210 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00070210
Unique Name	TCONS_00070210
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1368

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_516:231870..236221+

transcript sequence

>TCONS_00070210 ID=TCONS_00070210|Name=TCONS_00070210|organism=Clytia hemisphaerica|type=transcript|length=1368bp
GGATTGGTGTGGTGATGCCAGAGCTTTTCAACAATCATACGAACCCAATC
TCATGAATTGCCTTACCgtTGTAAGCAAAGTTGCATCAATGCAAGGCTAT
GATTTACGTTTGGGTTACCGCCTTCTTGCTGTGTGTTCTGCTCACAAAGA
AAAGCTGTCACAAAAATCCTCTACCATATTAACTCAATGGTCCGAAGAGC
TTGGTCGCTTGTTACTATTACGTCATCAAAATGAAAGCAACGGCAAACCA
AACTTCAACGCCAATCAAATGAAACCGATGCCTGCACCAATGGCTAGAGG
GGACAGTACTATTGCATGGCAACCAAACAGTCAACAACAACAGCAGACCA
ATGTATCAGTCACTGTCTCATCTGTATGGGGAGTCTCCTCTACCCCCTCC
GTCAATCAACCCATGAATACAGGAAATGCGGGTGGAGGGGGAGGCGGTAT
GAACCAACAGGGCGGTCAAACTTTTGATCAAAGTGGTGGAAATAACCAAC
AGATGAAAAACATGAATAACCAACCAGGCTTCAACAATTCGAACAATGGA
GTTGGTGTACAGCGCAATGACATGAACGTAGTCAGTAACGTCATGTTACA
ACGCCAAGGATCCAACGTTCAAATCAACCAACAAACCAACGTCAATGCAA
ATAACCAAGGTAGTACTAGCTTTTCAACACAATTCACACAAAGTGGACCG
CAGAACCAAAACAACGTTTCCGGTCCTTTCCCCGCGGCTGCCGCTGCTGC
TGCAGCAGTTGCGGCAGCAGCGGCCACAGCAACCGCTACAGCGACTGCTA
CAGCGACGCTTCAGATGCAAGAGCAGCCACAGCCCGACCAAATGAACAGA
GGAGATATGATGGATAATCAACAACAACAGTATCAGATCCAAGGGCAGAC
AAACGTACAAACGGGGCGTGGTATGATCAATAATACGATCAATGGAAGTA
TGAATAGACAGATGTTCAATAAACCAATGGGCTATATGATGAACAACCCA
AATAATATGACCCAATACATGACATCGCAACAGCGAAATTTCATGAATCA
AGGAATGAACCGAAACATGATGAGTCGCTTTCAAGGTCCACAACTAAAGC
GACCGCCAATGATGGGAGGTTACGGTAATAATATGATGACAAGCCCAATG
ACGCCCGACCCGCCCAACGGTCAGTTTAGTCCATACGGACCACCCGGTGG
CATGAACAGATCTGGACCAGGATTTCCACCGCAGTATCAGCAGCCGCCGC
CCGGGTACAACGGAAATAATTTCAATGCAAATATGGGCGGAGCAAATATG
GGTGGGATGGGCGGTATGAATATGGGGATGAATAATAGTATGGGAATGAG
TGGAAATAATAGTATGGG

Run BLAST on NCBI

transcript from alignment at scaffold_516:231870..236221+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00070210 ID=TCONS_00070210|Name=TCONS_00070210|organism=Clytia hemisphaerica|type=transcript|length=4352bp|location=Sequence derived from alignment at scaffold_516:231870..236221+ (Clytia hemisphaerica)
GGATTGGTGTGGTGATGCCAGAGCTTTTCAACAATCATACGAACCCAATC
TCATGAATTGCCTTACCGTAAGTCTTGTATACTTGTATACTCTGATCTAT
ACTGAAGCCTTAAAGTTTGGTCAATGAAGACTAGAATCTTTTTATGTAAA
GTTTTCTATACGATTGCCTAGTATAGAAgatcctttttttttaaaaaacg
aaGAAAACTTGTATGGAAAATAGCATAACAGATATTATTTTGATCGTGTG
AAAAAGAGTAACCTGGAACTGCTGGAAACttgattttgaaagtttcaCAC
ATTTGAAAGGTGTTAATCAATCCAGATAACATATATAGCGAAGATTGTTA
TTGATCTAAATCATGAATGACGAAAACGATATCTTTAAGCCTCTTTTAAT
TGATCCTGCGTCATAAAgattatctttttctttgttttctctcgTTTCGA
TAATTTCAATCATTGTACACCCAAGTGAGCCCCGTTTCGGAGTTTAACGT
TTTGGCAGCGATTTTTATTCTGGAAGCACCGCAGCGAAAAcagacattgt
gacgtcacGAGTGACCtatctttaattttaaaaagtggggATTCATATTA
ATTGTCGATTGAaagtatatttttaaatttctacGTTTTGTTCGANAAAA
TAGCATAACAGATATTATTTTGATCGTGTGAAAAAGAGTAACCTGGAACT
GCTGGAAACttgattttgaaagtttcaCACATTTGAAAGGTGTTAATCAA
TCCAGATAACATATATAGCGAAGATTGTTATTGATCTAAATCATGAATGA
CGAAAACGATATCTTTAAGCCTCTTTTAATTGATCCTGCGTCATAAAgat
tatctttttctttgttttctctcgTTTCGATAATTTCAATCATTGTACAC
CCAAGTGAGCCCCGTTTTGGAGTTTATCGTTTTAGCAGCGATTTTTATTC
TGGAAGCACCGCAGCGAAAAcagacattgtgacgtcacGAGTGACCTATC
TTTAAATTTCCTTAAGTGGGGATTCATATTAATTGTCGATTGAaagtata
tttttaaatttctacGTTTGGTTCgaaaaaagtgcaaaatatttttacgt
ttttaggtTGTAAGCAAAGTTGCATCAATGCAAGGCTATGATTTACGTTT
GGGTATGTATCAGTCAATCCTCcaaatgaaaatcgaaaatttataAAGCT
TTATTTTTGACAATCAAAGAAATTTGAACTAAATTAAGCATTATACGTAT
TATTTACACTATATAGTAGGATATTCAAATCTTTCGGATCTTTCATCCAA
CAGTATTCCCTAGTTCAAACTACCGAAAAAAGTATTGTACACATCCGTCA
AACACTTGTTATTTTCGCTTTCGTACTGTTGCTTTCATATTATCGGAAAC
AATACATTAAATAATTATACGCCATTACTTTTTGTCTTGTTTGTAGGTTA
CCGCCTTCTTGCTGTGTGTTCTGCTCACAAAGAAAAGCTGTCACAAAAAT
CCTCTAGTAAGCCATTCTTTGGTTTGGAAggattttaaaaatcttaactA
TATGCTCAGACCTGTCAAATCTAATGATAGAAGATCGTTCAAAGCTTACG
CTTATTTGCATGTACGGTTATCCTGGGCGGCATTGATAAACTGGGTGGCA
AAATTGGGTCATTTAATAATTAACTCCTTTAGAAGTCAATAATTAACTCC
TTTAGAAGACGTCTATCGTACAATACGCATCTTGGCTTGGCTGTattctt
ttttctgaaattcattaaaaaaaatttctacgCTTTTCTTAGCCATATTA
ACTCAATGGTCCGAAGAGCTTGGTCGCTTGTTACTATTACGTCATCAAAA
TGAAAGCAACGGCAAACCAAACTTCAACGCCAATCAAATGAAACCGATGC
CTGCACCAATGGCTAGAGGGTTAGTTTCAAATTCACTATCTTGTAAATTG
CATAGTTTTTATTTCCAGAAATTTCATGATCCAATACAATAGGATTACCT
TTTTCCCAAATTCGTAGTTCTGAATAGTTATGTATTCGCATTCATTATTG
AACCACATGTGTGATCTAGTTATATTTTTTTCGACAGGCTGTTTTTATTG
TCTTGTTTGTAAGAATATTCTGAatgaaactttttaaaactCTTTTCCAT
TTTTGACATAACGAGGCTGTATTTTACTGTCCTGCCGTTTTTGAATATTA
TATtcttatcagaaaaattttgagttaaattttttttcattgggtAATTT
CATTATAGGGACAGTACTATTGCATGGCAACCAAACAGTCAACAACAACA
GCAGACCAATGTATCAGTCACTGTCTCATCTGTATGGGGAGTCTCCTCTA
CCCCCTCCGTCAATCAACCCATGAATACAGGAAATGCGGGTGGAGGGGGA
GGCGGTATGAACCAACAGGGCGGTCAAACTTTTGATCAAAGTGGTGGAAA
TAACCAACAGATGAAAAACATGAATAACCAACCAGGTACATCAGAATTGT
TTGAAAGTCTACAGTATTACAGTTTTCTGTTGTAATAAAACCATTTTGAA
TACAAAAGTTTAGGAAACATTACCGTAAACAAACATTACGTACCTAAAAA
TCCATTCCTTCAAGTCTTCTAAAATTCCAAATTAAAGCCTGTACAAAAGA
CAAAGCAGTAATATTTGAGAATTTCTTTTCATCTGTAGGCTTCAACAATT
CGAACAATGGAGTTGGTGTACAGCGCAATGACATGAACGTAGTCAGTAAC
GTCATGTTACAACGCCAAGGATCCAACGTTCAAATCAACCAACAAACCAA
CGTCAATGCAAATAACCAAGGTTCGTAAAATGTTAGAATTCCTTGTTTGT
ATAAGCCTTTTACAATGAAAGCAACGGCTTAGGTATTGAATTGTGATGTA
AGTTTCCGAAAGTTGGTGTGATTTTTACCGCATGAAAATACAAAATGTCC
GTGTTATTGTCACTTTAATTTTAAGGAAGGTGTGTTATTTTATTTAATCC
TTTAAACTTCTAGGTAGTACTAGCTTTTCAACACAATTCACACAAAGTGG
ACCGCAGAACCAAAACAACGTTTCCGGTCCTTTCCCCGCGGCTGCCGCTG
CTGCTGCAGCAGTTGCGGCAGCAGCGGCCACAGCAACCGCTACAGCGACT
GCTACAGCGACGCTTCAGATGCAAGAGCAGCCACAGCCCGACCAAATGAA
CAGAGGAGGTAAGATTAATTCGTAAAGACTTTTTAGCAACGGGGATAGTT
CTCTTCATTGCAAGCTTTGACTTTGACAACGATTCCTAACATTACAGCAT
AAATGGGAGATCTGTAACAGTCACTACTAACTGGCATGGAGATATGGCAT
TAGCCTTATATGTTTGACAGCGGTATAAagtaatactaataatatatCTC
AAGTTTGAAGACTCGTTACTTAAACTCCATTCCTATTTCCCTTTCAAACT
TGACTTTTTTGTTCGTTCAGATATGATGGATAATCAACAACAACAGTATC
AGATCCAAGGGCAGACAAACGTACAAACGGGGCGTGGTATGATCAATAAT
ACGATCAATGGAAGTATGAATAGACAGATGTTCAATAAACCAATGGGCTA
TATGATGAACAACCCAAATAATATGACCCAATACATGACATCGCAACAGC
GAAATTTCATGAATCAAGGTACAGAGACGAGACTCTGAATCCCCATTGTA
TTACCCTTGTATTTCCTAATGCCGAATCTTGCTAGCCaaaatttcatttg
ttttttataactATAAGATTTCAAGCTATTTCTTAGACTGcaaacaaata
actttttgtGTTTCCAACCGTTTAAATTTTAAGTAATAGAATAATGTAAA
TATAATTCGGAAATAAATACTGGTTGACTAAGTGGTGTAATTAATACTAG
ACGAGCAAATAGACAATCAAtgaaaaacccaaaaaatgtaGACCAAACGA
TAGACCTGCAAAATACCTGAAAAGACCATGAAGAACTGTTTAAATCGAAT
GCCAAACCTTACTTCTTTCTCCTTTATTTCCAACAGGAATGAACCGAAAC
ATGATGAGTCGCTTTCAAGGTCCACAACTAAAGCGACCGCCAATGATGGG
AGGTTACGGTAATAATATGATGACAAGCCCAATGACGCCCGACCCGCCCA
ACGGTCAGTTTAGTCCATACGGACCACCCGGTGGCATGAACAGATCTGGA
CCAGGATTTCCACCGCAGTATCAGCAGCCGCCGCCCGGGTACAACGGAAA
TAATTTCAATGCAAATATGGGCGGAGCAAATATGGGTGGGATGGGCGGTA
TGAATATGGGGATGAATAATAGTATGGGAATGAGTGGAAATAATAGTATG
GG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_043725	XLOC_043725	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_516	supercontig	scaffold_516:231870..236221 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.632763	1.03235	0	0.667556	4.11761	3.95093	6.59793	8.30111	2.24564	0.8366	0.701588	1.41034	3.5289	0.743987	0.00897639	2.84801e-09	0.00505239	0.000566714	2.87663	0.0388998	0	1.18127	0	0.498771	2.32291	7.21027	0.0717463	0.0429938	0.814074	0

Blast

[Close]

BLAST of TCONS_00070210 vs. Swiss-Prot (Human)
Match: ZMIZ1 (Zinc finger MIZ domain-containing protein 1 OS=Homo sapiens GN=ZMIZ1 PE=1 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 4.457e-22
Identity = 52/83 (62.65%), Postives = 66/83 (79.52%), Query Frame = 2

Query:    2 DWCGDARAFQQSYEPNLMNCLTVVSKVASMQGYDLRLGYRLLAVCSAHKEKLSQKSSTILTQWSEELGRLLLLRHQNESNGKP 250
            DWCGD RAFQ+ +E +LM CLTVVS+VA+ QG+DL LGYRLLAVC+A+++K + KS+ +L+ W EELGRLLLLRHQ      P
Sbjct:   37 DWCGDPRAFQRPFEQSLMGCLTVVSRVAAQQGFDLDLGYRLLAVCAANRDKFTPKSAALLSSWCEELGRLLLLRHQKSRQSDP 119

The following BLAST results are available for this feature:

BLAST of TCONS_00070210 vs. Swiss-Prot (Human)

BLAST of TCONS_00070210 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ZMIZ1	4.457e-22	62.65	Zinc finger MIZ domain-containing protein 1 OS=Hom...	[more]

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TCONS_00070210 (transcript) - C. hemisphaerica