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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069914 ID=TCONS_00069914|Name=TCONS_00069914|organism=Clytia hemisphaerica|type=transcript|length=1312bp TAAAAAGTGTATAAATATGGTCACGTTTGAGAGTTTTGAAGGATAGTTAT CAGGCAAACCACAGAACGATGAGAGGGTTACTGGCTTGTTGTCTCTTGGC AGCTCTAACCCTGAGTTACGCTAAGCCACTGTCTTGGAAAGACTATGAAC GCCGAAGAGCGTACAACAAATTCGTGTACGATATTCTAGCTGACAAAAAG AAAGCTATAGAGGAAGAAGGAGGATTTCAATACAGAAGAGAATATCCGAA AAGACGTGCTGAGAGTTTGGATGGTACAGAGCAGTATCATACTACATCTC AACCCATTACAACAGATAGTTGGAGATTAcctaaatcaaaatcaaatgga TATACCACAGATCGACCGTGGTATTGGACAACAGATCGATCCTGGACTAC TAGGCGCCCCTGGACCACTGGACGACCCTGGACTACATGGCACCCCTGGA CCACTGGACGACCCTGGACTACTTGGCACCCCTGGACCACTGGACGACCC TGGACTACTTGGCGCCCCTGGACCACTGGACGACCCTGGACTACTTGGCG CCCATGGTGGACTACAAGTCGACCATCAGGAGGAAGActcttaaaagaaa aagaacacaTTAATAAATCATGGGGATGGCTTGAAGAGTACTTTTACAAC AAGAAGAAGAAATAAGCAATGAAGTTGATGACACCGTTATCGTATTGTCT ACagacttttgttatttttttcatactCTATTTTTTGCATCTTAGAtttt ttagtttgttttgtttgttattttttttgttgaaatttgtaACGCTTTTT AATTATGTTATGAACGATGTAAAACATATTCGTCCAATATGGTACACCGT ACTTAACCTTAATGTTGACCGTGTAACTAATCAGAAAACTATTTATGATA TAATTTCGGCCTTGGTTGCTACAATCATCCGCCGAAATATATCAcaaatt ttgggtattttaacgtttttcagactTTGAAGCTCGGGCGAGGATTGCGA TTTaagtattttatttgatttttcgatttgggggCGGGGTTAAGAATTTA GAGTTAAAACTGTAACCTCCAATCGTACTTTAGTAAAGTAACCGGAAACA TAACTTTTATactcaaataccaaaatcaattttttgactatggtcagagc cgtTAAGTGTAAGATATTACGGTGGGGATTGTAGTCTTGAAACCATATAA CTCCCCAAGAAGATATGGCAACCGAGCCGATTATCTATCATACCTTTGTA TCACTTACTAACAATAACCTCTCCATCATCTAGTGAGATGTTTCCTATTT GTTCATTTTTCG Run BLAST on NCBI transcript from alignment at scaffold_511:343509..348551+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069914 ID=TCONS_00069914|Name=TCONS_00069914|organism=Clytia hemisphaerica|type=transcript|length=5043bp|location=Sequence derived from alignment at scaffold_511:343509..348551+ (Clytia hemisphaerica) TAAAAAGTGTATAAATATGGTCACGTTTGAGAGTTTTGAAGGATAGTTAT
CAGGCAAACCACAGAACGATGAGAGGGTTACTGGCTTGTTGTCTCTTGGC
AGCTCTAACCCTGAGTTACGGTAAGTAAGCATTATTTCAAATGAATGATA
ATTCTAGTTTGCTCTTCAAGCTCATTTTCTCTTCAGGCATATTTAAAAGA
CATTTAACCCTGAAGGGAGGGAATTATTATTTTATCATACCCTGCATTTT
TAATGTTACGCAGAATAAATAAAACGAAAAATCTTGGTCGTGTGGGGTGT
GGCCTAATTTTTTCCGTAAGAATAAATTGAGTTGACACGAGATAATAATT
TGTAGCGAAATAGTgcatagatttttttttctactttttttctaGCTAAG
CCACTGTCTTGGAAAGACTATGAACGCCGAAGAGCGTACAACAAATTCGT
GTACGATATTCTAGCTGACAAAAAGAAAGGTTATTATCATCAATACAACG
GAGAATACATTGACATTGATATTTATTTTACTTCAGCCTTTGTCGAAAAT
TATAGGAAATATTCATGGCCACAATAATCAATTTGCCCATTagaaaaatt
tttcttcttcatttttcatcttcgttatctTTCCAAGGAGGTACTCTTTT
TTAACGTTAATTTTTACCAAGATTGATGTTTCAAAATTTACGACGGACTG
CTAAGTTCTTTGGAAGAGAGTTTAATTACAACAAATAATAGGAAGATTGA
TCCCCTCAGGACACTTACCTCCCAGAAAAATCGATATTTACACACCTTTA
TGATGTTTTAGCTATAGAGGAAGAAGGAGGATTTCAATACAGAAGAGAAT
ATCCGAAAAGACGTAAGAATTTATAGCAACATGtgccaaaaattgcaaaa
ataatgttaaaaacaaagcgataaaaaaataaaatttgatttggTCTGAT
TCGGAGACCTCCGTACTTTTTCGTTTTATACTNTAAAAGACATTTAACCC
TGAAGGGAGGGAATTATTATTTTATCATACCCTGCATTTTTAATGTTACG
CAGAATAAATAAAACGAAAAATCTTGGTCGTGTGGGGTGTGGCCTAATTT
TTTCCGTAAGAATAAATTGAGTTGACACGAGATAATAATTTGTAGCGAAA
TAGTgcatagatttttttttctactttttttctaGCTAAGCCACTGTCTT
GGAAAGACTATGAACGCCGAAGAGCGTACAACAAATTCGTGTACGATATT
CTAGCTGACAAAAAGAAAGGTTATTATCATCAATACAACGGAGAATACAT
TGACATTGATATTTATTTTACTTCAGCCTTTGTCGAAAATTATAGGAAAT
ATTCATGGCCACAATAATCAATTTGCCCATTagaaaaatttttcttcttc
atttttcatcttcgttatctTTCCAAGGAGGTACTCTTTTTTAACGTTAA
TTTTTACCAAGATTGATATGTTTACGACGGAATGCCAAGTTTTTTTGGAA
GAGAGTTTAATTACAACAAATAGTAGGAAGATTGATCCCCTCAGGACACT
TACCTCCCAGAAAAATCGATATTTACACACCTTTATGATGTTTTAGCTAT
AGAGGAAGAAGAAGGATTTCAATACAGANccttttgttatttttttcata
ctCTATTTTTTGCATCTtagattttttagttttttaatttcgcctagcga
aagtattacgatagcctttcgcggcggcggcggcggtgtaataaaaaaat
tagaaaacgaaagtactcgatacggtggacNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTG
CAATAAAAATTGGAATCTCTCTGTAAGTTTTAATCCGCATCCCTGTTACA
CCCTGTCAGGAAGGTGACACAAGCCTTGAAATTACAATTTTAATTAGAGC
AGCACTGTAAAAAGTGTATAAATATGGTCACGTTTGAGAGTTTTGAAGGA
TAGTTATCAGGCAAACCACAGAACGATGAGAGGGTTACTGGCTTGTTGTC
TCTTGGCAGCTCTAACCCTGAGTTACGGTAAGTAAGCATTATTTCAAATG
AATGATAATTCTAGTTTGCTCTTCAAGCTCATTTTCTCTTCAGGCATATT
TAAAAGACATTTAACCCTGAAGGGAGGGAATTATTATTTTATCATACCCT
GCATTTTTAATGTTACGCAGAATAAATAAAACGAAAAATCTTGGTCGTGT
GGGGTGTGGCCTAATTTTTTCCGTAAGAATAAATTGAGTTGACACGAGAT
AATAATTTGTAGCGAAATAGTgcatagatttttttttctactttttttct
aGCTAAGCCACTGTCTTGGAAAGACTATGAACGCCGAAGAGCGTACAACA
AATTCGTGTACGATATTCTAGCTGACAAAAAGAAAGGTTATTATCATCAA
TACAACGGAGAATACATTGACATTGATATTTATTTTACTTCAGCCTTTGT
CGAAAATTATAGGAAATATTCATGGCCACAATAATCAATTTGCCCATTag
aaaaatttttcttcttcatttttcatcttcgttatctTTCCAAGGAGGTA
CTCTTTTTTAACGTTAATTTTTACCAAGATTGATGTTTCAAAATTTACGA
CGGACTGCTAAGTTCTTTGGAAGAGAGTTTAATTACAACAAATAATAGGA
AGATTGATCCCCTCAGGACACTTACCTCCCAGAAAAATCGATATTTACAC
ACCTTTATGATGTTTTAGCTATAGAGGAAGAAGGAGGATTTCAATACAGA
AGAGAATATCCGAAAAGACGTAAGAATTTATAGCAACATGtgccaaaaat
tgcaaaaataatgttaaaaacaaagcgataaaaaaataaaatttgatttg
gTCTGATTCGGAGACCTCCGTACTTTTTCGTTTTATACTATTGTGGTTGA
ACCTGATTATCAATAATCCTGTTAGCAAGAATAAAAATGTTTACAAAGTC
ATTAGTCATTGAATTAGGGGAAAAGGGTACCAAAAGAACTGTAACTTAGT
AATAATCTATTACATTTTCCAGGTGCTGAGAGTTTGGATGGTACAGAGCA
GTATCATACTACATCTCAACCCATTACAACAGATAGTTGGAGATTAccta
aatcaaaatcaaatggaTATACCACAGATCGACCGTGGTATTGGACAACA
GATCGATCCTGGACTACTAGGCGCCCCTGGACCACTGGACGACCCTGGAC
TACATGGCACCCCTGGACCACTGGACGACCCTGGACTACATGGCGCCCAT
GGACCACAGATCATCCCTGGACTACTTGGCACCCATGGACCACTGGACGA
CCCTGGACTACTTGGCACCCCTGGACCACTGGACGACCCTGGACTACATG
GCGCCCCTGGACCACAGATCATCCCTGGACTACTTGGCACCCATGGACCA
CTGGACGACCCTGGACTACTTGGCGCCCCTGGACCACTGGACGACCCTGG
ACTACTTGGCGCCCATGGTGGACTACAAGTCGACCATCAGGAGGAAGAct
cttaaaagaaaaagaacacaTTAATAAATCATGGTAAGAAAAAGTTTCCC
AGCCAAAGATGTATTGTGTAAGACAAGAAGCCCGtggggcgtgaaggccc
agcaactTAAAAtctcctgggtggaaaatttttgaacaggaggctaatac
agcagaattagaaaaaaaaacaaggcgCTGTTATCGCAAAAACTTTGGCG
AACCGAACCACTAACCACAGACACTTCTATTTGAAAAACCCTTTTCGGCC
TTTTCGATAAGCTGGGcaaattagaaaatttgaatgttttttgaTATCGT
AAAGGTACGGACATGCAAGTATATATCTccaaactttctttttgcatttt
aaACTAAGCAATTTATTTATTTGCTAATGCAATAcatgatttatttttca
tagGGGATGGCTTGAAGAGTACTTTTACAACAAGAAGAAGAAATAAGCAA
TGAAGTTGATGACACCGTTATCGTATTGTCTACagacttttgttattttt
ttcatactCTATTTTTTGCATCTTAGAttttttagtttgttttgtttgtt
attttttttgttgaaatttgtaACGCTTTTTAATTATGTTATGAACGATG
TAAAACATATTCGTCCAATATGGTACACCGTACTTAACCTTAATGTTGAC
CGTGTAACTAATCAGAAAACTATTTATGATATAATTTCGGCCTTGGTTGC
TACAATCATCCGCCGAAATATATCAcaaattttgggtattttaacgtttt
tcagactTTGAAGCTCGGGCGAGGATTGCGATTTaagtattttatttgat
ttttcgatttgggggCGGGGTTAAGAATTTAGAGTTAAAACTGTAACCTC
CAATCGTACTTTAGTAAAGTAACCGGAAACATAACTTTTATactcaaata
ccaaaatcaattttttgactatggtcagagccgtTAAGTGTAAGATATTA
CGGTGGGGATTGTAGTCTTGAAACCATATAACTCCCCAAGAAGATATGGC
AACCGAGCCGATTATCTATCATACCTTTGTATCACTTACTAACAATAACC
TCTCCATCATCTAGTGAGATGTTTCCTATTTGTTCATTTTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00069914-exon-scaffold_511-1491911889:343509..343628 | TCONS_00069914-exon-scaffold_511-1491911889:343509..343628 | Clytia hemisphaerica | exon |
TCONS_00069914-exon-scaffold_511-1510915933:343509..343628 | TCONS_00069914-exon-scaffold_511-1510915933:343509..343628 | Clytia hemisphaerica | exon |
TCONS_00069914-exon-scaffold_511-1575043694:343509..343628 | TCONS_00069914-exon-scaffold_511-1575043694:343509..343628 | Clytia hemisphaerica | exon |
TCONS_00069914-exon-scaffold_511-1491911889:343904..343987 | TCONS_00069914-exon-scaffold_511-1491911889:343904..343987 | Clytia hemisphaerica | exon |
TCONS_00069914-exon-scaffold_511-1510915933:343904..343987 | TCONS_00069914-exon-scaffold_511-1510915933:343904..343987 | Clytia hemisphaerica | exon |
TCONS_00069914-exon-scaffold_511-1575043694:343904..343987 | TCONS_00069914-exon-scaffold_511-1575043694:343904..343987 | Clytia hemisphaerica | exon |
TCONS_00069914-exon-scaffold_511-1491911889:344320..344370 | TCONS_00069914-exon-scaffold_511-1491911889:344320..344370 | Clytia hemisphaerica | exon |
TCONS_00069914-exon-scaffold_511-1510915933:344320..344370 | TCONS_00069914-exon-scaffold_511-1510915933:344320..344370 | Clytia hemisphaerica | exon |
TCONS_00069914-exon-scaffold_511-1575043694:344320..344370 | TCONS_00069914-exon-scaffold_511-1575043694:344320..344370 | Clytia hemisphaerica | exon |
TCONS_00069914-exon-scaffold_511-1491911889:346981..347197 | TCONS_00069914-exon-scaffold_511-1491911889:346981..347197 | Clytia hemisphaerica | exon |
TCONS_00069914-exon-scaffold_511-1510915933:346981..347197 | TCONS_00069914-exon-scaffold_511-1510915933:346981..347197 | Clytia hemisphaerica | exon |
TCONS_00069914-exon-scaffold_511-1575043694:346981..347197 | TCONS_00069914-exon-scaffold_511-1575043694:346981..347197 | Clytia hemisphaerica | exon |
TCONS_00069914-exon-scaffold_511-1491911889:347270..347305 | TCONS_00069914-exon-scaffold_511-1491911889:347270..347305 | Clytia hemisphaerica | exon |
TCONS_00069914-exon-scaffold_511-1510915933:347270..347305 | TCONS_00069914-exon-scaffold_511-1510915933:347270..347305 | Clytia hemisphaerica | exon |
TCONS_00069914-exon-scaffold_511-1575043694:347270..347305 | TCONS_00069914-exon-scaffold_511-1575043694:347270..347305 | Clytia hemisphaerica | exon |
TCONS_00069914-exon-scaffold_511-1491911889:347378..347491 | TCONS_00069914-exon-scaffold_511-1491911889:347378..347491 | Clytia hemisphaerica | exon |
TCONS_00069914-exon-scaffold_511-1510915933:347378..347491 | TCONS_00069914-exon-scaffold_511-1510915933:347378..347491 | Clytia hemisphaerica | exon |
TCONS_00069914-exon-scaffold_511-1575043694:347378..347491 | TCONS_00069914-exon-scaffold_511-1575043694:347378..347491 | Clytia hemisphaerica | exon |
TCONS_00069914-exon-scaffold_511-1491911889:347862..348551 | TCONS_00069914-exon-scaffold_511-1491911889:347862..348551 | Clytia hemisphaerica | exon |
TCONS_00069914-exon-scaffold_511-1510915933:347862..348551 | TCONS_00069914-exon-scaffold_511-1510915933:347862..348551 | Clytia hemisphaerica | exon |
TCONS_00069914-exon-scaffold_511-1575043694:347862..348551 | TCONS_00069914-exon-scaffold_511-1575043694:347862..348551 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_511 | supercontig | scaffold_511:343509..348551 + |
Blast
The following BLAST results are available for this feature:
|