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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069900 ID=TCONS_00069900|Name=TCONS_00069900|organism=Clytia hemisphaerica|type=transcript|length=1453bp
TGTCCCATGTGTCAAGCTCCTTTGAAGAAAGACACTTCTGATGAAAATAC
ACCCTTATTGAGAAGCTACACAATCGATGTTTAATGCGGAAATATTTTGA
CGGTAAAGAAGTGACTACTATCTTCATGGAGGGGCGTGAAGATGGGCCTT
TTTATGATTTATACACCTTATTCATGGAACGGATATTAACAGAGAGAAAT
CTCACTTCGATGACCTGCTTTGAGAATGTCATTATTGGTGTAAGTCAAGA
GGTCACATGGTACCAATATGGTTTCCATACCCCTCAAGGACCAATCAATG
TTGAGAATTATCCAACAAATGAATTACTTTCTTTCAAAGATGAATTTATG
AAGCGATTGAAGATGAATATGGATCAATCATTCACTCTATCGAAGGTAGT
TATCTTCAAACGCCAAGACACTAGACGAATTACAAATATGAACGAGTTAG
TATTGAAACTATCAATGAGGTTCAAAGCTGAGGTTACCATATTGGATTTA
CAAGAGGACACTTTTGAAGACATCCTAACAGCAGTATCTAATGCCAAGCT
TTTGATTGGTGTTCATGGTGCCCATTTAGTTACCAGTCTCTTTCTCCCTC
CTGGTGCCTTATTAATGGAAATTTATCCTTATGGGATACCTTCGGAGAAC
TATACACCATACAAAACTCTTGTATCGCTCATTGGGGTCCAGTATTTAGC
CTTTGAAACAGAATCAGAAGACTTGTCAACGAATTTTATCGACCGCCCAC
CAAATCAAGGCGGTATCGCACACCTACCACCACACCAAAAAGAGGAAATT
TTGAACACAAAGAGAGTTCCCGAACATCTTTGTTGTGACAACCCTTTCTG
GTTGTTTAGGATTTACCAAGACACCGAGGTTGATATCAATAGGTTTTTAC
CACTTTTACATGGTAGAATTTCCTAATTCTTTTAATTGTATTGGATAAGA
TTTTTATCTGTGCTCCAGAAAACTATCAGATACTAGATTAGGTGAAACTT
GAAAGGGCTAATCTTTGATAAAGCCTTGACAGCAAACATCTGTTGGATTA
AAATTgaggttttctttaaaaaatgttacTTGTTAAAAGGTTTCATAGAC
GAAACATAAAAAATCTGATTACCctccttaaattttatcgatatTACCTA
TAATTGCCTCCCTCGATTGTAATTCTATCTTCGATCTTCATTTGAATCAT
GGAGAgagttttatattattttccaGTTTAAGTGGGGGGGGGCAGCATGT
TTCAGTTCGAATTACAGGaaagattcaaaattttagaagatATCTGCAGA
AATACGTAAATTTCTAGTACAGTAAGCCAAATGGGAAGATTCTATTTGGc
tttttaacaaaatattttgtaactttttttagtTTATATACAATGTACGc
attcaaatcatttttttagaagaaatttagcaatttttattttttgagaa
att Run BLAST on NCBI transcript from alignment at scaffold_511:324364..326468+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069900 ID=TCONS_00069900|Name=TCONS_00069900|organism=Clytia hemisphaerica|type=transcript|length=2105bp|location=Sequence derived from alignment at scaffold_511:324364..326468+ (Clytia hemisphaerica)
TGTCCCATGTGTCAAGCTCCTTTGAAGAAAGACACTTCTGATGAAAATAC
ACCCTTATTGAGAAGCTACACAATCGATGTTTAATGTGaggattatttta
ttttcacagTCATTTATGTTGTGTTTTTCCCGGCTGTGTTGTGTTTTACC
TACTGTGTTAAAAAAATGCAATTATAGCAAGGAGCTTCTATTTTTGAATC
CTCAAATTCTCTTCTTCATCCATAAGATTTAATCCTCATGATTTGTGATT
TGTGTTTAAGGTGAAGAATGGTTACTCATTTGGTCATAATTGCCATTTTA
GCTGTTGTTGTTGCTTTTTTCCTTTCACACGACAAAATTACATTCATTTT
TGTTGAGAAAGATGCTGTCTTAAATCAGGAATCCCTGATTCTTTCAGGAG
TGCCGAATGAAATTTCATCTACTGTATTTTGTACCCTTAGTAAACTTGGT
AACCAAGAATGCAGATTCCAGAACCTTTGTTTTTATAACAATCAATACAC
TTACTATTATGGCAAAAACTCTAAAGAAGAAGGATTACAATCAGAATCAC
CTTTTCTACTTGATTTATCAAGTGTAAGAAACCATAATGCAAAATACTTT
CAATTTTCTAATAGAACTATGACAAAAAACACGAAATTTCATTATATTCG
TGGCAACACAATTTTGTTTCATCGATTCAATCCTGATAACCTGATGCATG
TTATCCATGACGATTTACTTCCTTACTTTCACACTAGGCGGAAATATTTT
GACGGTAAAGAAGTGACTACTATCTTCATGGAGGGGCGTGAAGATGGGCC
TTTTTATGATTTATACACCTTATTCATGGAACGGATATTAACAGAGAGAA
ATCTCACTTCGATGACCTGCTTTGAGAATGTCATTATTGGTGTAAGTCAA
GAGGTCACATGGTACCAATATGGTTTCCATACCCCTCAAGGACCAATCAA
TGTTGAGAATTATCCAACAAATGAATTACTTTCTTTCAAAGATGAATTTA
TGAAGCGATTGAAGATGAATATGGATCAATCATTCACTCTATCGAAGGTA
GTTATCTTCAAACGCCAAGACACTAGACGAATTACAAATATGAACGAGTT
AGTATTGAAACTATCAATGAGGTTCAAAGCTGAGGTTACCATATTGGATT
TACAAGAGGACACTTTTGAAGACATCCTAACAGCAGTATCTAATGCCAAG
CTTTTGATTGGTGTTCATGGTGCCCATTTAGTTACCAGTCTCTTTCTCCC
TCCTGGTGCCTTATTAATGGAAATTTATCCTTATGGGATACCTTCGGAGA
ACTATACACCATACAAAACTCTTGTATCGCTCATTGGGGTCCAGTATTTA
GCCTTTGAAACAGAATCAGAAGACTTGTCAACGAATTTTATCGACCGCCC
ACCAAATCAAGGCGGTATCGCACACCTACCACCACACCAAAAAGAGGAAA
TTTTGAACACAAAGAGAGTTCCCGAACATCTTTGTTGTGACAACCCTTTC
TGGTTGTTTAGGATTTACCAAGACACCGAGGTTGATATCAATAGGTTTTT
ACCACTTTTACATGGTAGAATTTCCTAATTCTTTTAATTGTATTGGATAA
GATTTTTATCTGTGCTCCAGAAAACTATCAGATACTAGATTAGGTGAAAC
TTGAAAGGGCTAATCTTTGATAAAGCCTTGACAGCAAACATCTGTTGGAT
TAAAATTgaggttttctttaaaaaatgttacTTGTTAAAAGGTTTCATAG
ACGAAACATAAAAAATCTGATTACCctccttaaattttatcgatatTACC
TATAATTGCCTCCCTCGATTGTAATTCTATCTTCGATCTTCATTTGAATC
ATGGAGAgagttttatattattttccaGTTTAAGTGGGGGGGGGCAGCAT
GTTTCAGTTCGAATTACAGGaaagattcaaaattttagaagatATCTGCA
GAAATACGTAAATTTCTAGTACAGTAAGCCAAATGGGAAGATTCTATTTG
GctttttaacaaaatattttgtaactttttttagtTTATATACAATGTAC
Gcattcaaatcatttttttagaagaaatttagcaatttttattttttgag
aaatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069900-exon-scaffold_511-1491911889:324364..324448 | TCONS_00069900-exon-scaffold_511-1491911889:324364..324448 | Clytia hemisphaerica | exon |
| TCONS_00069900-exon-scaffold_511-1510915933:324364..324448 | TCONS_00069900-exon-scaffold_511-1510915933:324364..324448 | Clytia hemisphaerica | exon |
| TCONS_00069900-exon-scaffold_511-1575043694:324364..324448 | TCONS_00069900-exon-scaffold_511-1575043694:324364..324448 | Clytia hemisphaerica | exon |
| TCONS_00069900-exon-scaffold_511-1491911889:325101..326468 | TCONS_00069900-exon-scaffold_511-1491911889:325101..326468 | Clytia hemisphaerica | exon |
| TCONS_00069900-exon-scaffold_511-1510915933:325101..326468 | TCONS_00069900-exon-scaffold_511-1510915933:325101..326468 | Clytia hemisphaerica | exon |
| TCONS_00069900-exon-scaffold_511-1575043694:325101..326468 | TCONS_00069900-exon-scaffold_511-1575043694:325101..326468 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_511 | supercontig | scaffold_511:324364..326468 + |
Blast
BLAST of TCONS_00069900 vs. Swiss-Prot (Human)
Match: PMGT2 (Protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2 OS=Homo sapiens GN=POMGNT2 PE=1 SV=1) HSP 1 Score: 194.512 bits (493), Expect = 1.198e-54 Identity = 110/271 (40.59%), Postives = 159/271 (58.67%), Query Frame = 3
Query: 102 GKEVTTIFMEGREDGPFYDLYTLFMER--ILTE--RNLTSMTCFENVIIGVSQEVTWYQYGFHTPQGPINVENYPTNELLSFKDEFMKRLKMNMDQS---FTLSKVVIFKRQDTRRITNMNELVLKLSMRFKAEVTILDLQEDTFEDILTAVSNAKLLIGVHGAHLVTSLFLPPGALLMEIYPYGIPSENYTPYKTLVSLIG--VQYLAFETESEDLSTNFIDRPPNQGGIAHLPPHQKEEILNTKRVPEHLCCDNPFWLFRIYQDTEVDI 887
E FMEG +G +DLY L + +L + L + CF + +G+S+ TWYQYGF PQGP NE+ F FM K+N+ + +++F R R I N EL+L L+ F+ + + L++ TF D++ VSNA +L+ +HGA LVT+LFLP GA ++E++PY + ++YTPYKTL L G +QY+A+ + + +RP +QGGI HL ++ IL ++ VP HLCC NP WLFRIYQDT+VDI
Sbjct: 186 AHEARLFFMEGWGEGAHFDLYKLLSPKQPLLRAQLKTLGRLLCFSHAFVGLSKITTWYQYGFVQPQGPKANILVSGNEIRQFA-RFMTE-KLNVSHTGVPLGEEYILVFSRTQNRLILNEAELLLALAQEFQMKTVTVSLEDHTFADVVRLVSNASMLVSMHGAQLVTTLFLPRGATVVELFPYAVNPDHYTPYKTLAMLPGMDLQYVAWRNMMPENTVTHPERPWDQGGITHLDRAEQARILQSREVPRHLCCRNPEWLFRIYQDTKVDI 454
The following BLAST results are available for this feature:
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