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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069870 ID=TCONS_00069870|Name=TCONS_00069870|organism=Clytia hemisphaerica|type=transcript|length=2749bpRun BLAST on NCBI protein sequence of TCONS_00069870-protein >TCONS_00069870-protein ID=TCONS_00069870-protein|Name=TCONS_00069870-protein|organism=Clytia hemisphaerica|type=polypeptide|length=487bp MSGMVKSKNVLVNLATPEEQAAREREEEEKLVNNQISEEEPMSSPYRQNSRun BLAST on NCBI transcript from alignment at scaffold_511:87463..98614+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00069870 ID=TCONS_00069870|Name=TCONS_00069870|organism=Clytia hemisphaerica|type=transcript|length=11152bp|location=Sequence derived from alignment at scaffold_511:87463..98614+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_511:87463..98614+ >TCONS_00069870 ID=TCONS_00069870|Name=TCONS_00069870|organism=Clytia hemisphaerica|type=CDS|length=13176bp|location=Sequence derived from alignment at scaffold_511:87463..98614+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00069870 vs. Swiss-Prot (Human)
Match: P4K2A (Phosphatidylinositol 4-kinase type 2-alpha OS=Homo sapiens GN=PI4K2A PE=1 SV=1) HSP 1 Score: 503.442 bits (1295), Expect = 2.199e-168 Identity = 242/401 (60.35%), Postives = 291/401 (72.57%), Query Frame = 3
Query: 351 NNIENDPDFSKVIRSTEEAIYMGILPERIYQGSSGSYFVKDKSKRVIGVFKPKNEEPYGHLNPKWTKWMHKTCCPCCFGRSCLLPNQGYMSEAGASLVDTKLGLNIVPKTKVVRLVSPTFNYNAYDRAKARSKQFATERFPDTIGKHMRAGLPPKIGSFQLFVEGYKDAEYYLKKFETQPLGDETLKEFQLQFEKLVCLDYITRNTDRGNDNWLIRYEAAPVVEGSTACLEHERVSICEQNEGESCDEAENWSIVGKPKIYIAAIDNGLSFPFKHPDSWRLYPYHWAWLPYAKVPFSDDIREMILPLLSDLNFVQSLIEDLFELFAEDKGFDNGNFDKQMSVMRGQILNLTQALKDKKTPAQLVQMPPVYVQRRRTNSDVRDGRGHSFVQSFHDKIPFFSW 1553
N DP+F V+R E AI I PERIYQGSSGSYFVKD R+I VFKPKNEEPYGHLNPKWTKW+ K CCPCCFGR CL+ NQGY+SEAGASLVD KL LNIVP+TKVV L S TFNY+A DR K+R K+ A E+ P + R GLPPK+GSFQLFVEGYKDA+Y+L++FE +PL + T ++ LQFE+LV LDYI RNTDRGNDNWLI+Y+ C + S D +W +V +P I +AAIDNGL+FP KHPDSWR YP++WAWLP AKVPFS +I+++ILP +SD NFV+ L EDL+ELF +D GFD G F KQ++VMRGQILNLTQALKD K+P LVQMPPV V+ R++ + S+ QSF + PFFSW
Sbjct: 102 NEFPEDPEFEAVVRQAELAIERCIFPERIYQGSSGSYFVKDPQGRIIAVFKPKNEEPYGHLNPKWTKWLQKLCCPCCFGRDCLVLNQGYLSEAGASLVDQKLELNIVPRTKVVYLASETFNYSAIDRVKSRGKRLALEKVPKVGQRFNRIGLPPKVGSFQLFVEGYKDADYWLRRFEAEPLPENTNRQLLLQFERLVVLDYIIRNTDRGNDNWLIKYD-------------------CPMDSSSSRD--TDWVVVKEPVIKVAAIDNGLAFPLKHPDSWRAYPFYWAWLPQAKVPFSQEIKDLILPKISDPNFVKDLEEDLYELFKKDPGFDRGQFHKQIAVMRGQILNLTQALKDNKSPLHLVQMPPVIVETARSH---QRSSSESYTQSFQSRKPFFSW 478 The following BLAST results are available for this feature:
BLAST of TCONS_00069870 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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