TCONS_00069759 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00069759
Unique Name	TCONS_00069759
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1609

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_507:131262..141755+
coding sequence from alignment at scaffold_507:131262..141755+

transcript sequence

>TCONS_00069759 ID=TCONS_00069759|Name=TCONS_00069759|organism=Clytia hemisphaerica|type=transcript|length=1609bp
GAATCCTTAGattttttcgtaaattttttattatttgcaTTGTTATTTTC
CTCTTACTTATATTccttacctcttttagtaaaaGTTGAATAAAATGGCT
GTCAACGTTTTCAACACTGGCGCAACATCTGACAATCTCAGTCGACATGA
AATGCTAACTTGGATCAATGACAGTTTACaatcaaattttacaaaaatag
aaCAAATGGCTTCAgGTGCTGCATATTGTCAATTTCTTGATATGCTGTTT
GAAAACTGTGTACCAATGAAGAAAGTCAAAGTTCAGGCTAAGTTAGAACA
TGAGTACATTGTCAATTGGAAACTGCTACAAAATGGCTTCAAAAAGGTTG
GCGTAGATAAGACTATACCAGTAGATAAATTGATCAAAGCACGATTCCAA
GACAATTTCGAATTTTGTCAGTGGTTCAAGAAGTTTTTCGATGCAAACTA
CGCTGGACAAGAGTACGACGCATTGGCCATCCGTGGAGGTCTCCAACCCA
TTGCTGACGGAAAGAAACCTGCTGCAGCTGGCTCAAGAAGTATGGCAGCT
CCCTCAAAGTCAAGGGCCGCTCCACCCAAACGAACAGCCGCCCCTAAAGC
AGCCCCTGTATCAAAAGCACCAAGTAGTAAAGGGTCAGGTGTTAGCCAAC
AAGAAATGGACACTGTAACTGCCGAACTCTCAGAAATGAAGACTAGCGTG
GACGGATTGGAAAAAGAGCGAGATTTTTATTTCGGCAAATTACGTGATAT
CGAAGTATTGTGTCAAGAAGAAGGAGCAGTGGGAACACCCCTTAGTGAAA
AAGTACTGGCCATCTTATACGCAACTgagGATGGTTTCGCACCACCGGAA
GAAGAAGAAGGGGCAGAATATATCGATGGAGGTGAACCTGAAGAATTCTA
AATCGCATCCCTCGTTCGTACACATCACACACAAAAAAGTTGATCCGAAT
ATTATTTTATTGGTTTTCTAAAAGATTCCGGGTTCAACTAATTGTTGTTG
ACGTTAAAAGACATTTTGAAAACGTTCTGTCTTGGGGACTGTTGTTCAAC
ATGCATTAGTTGAACTGTGTGTGTGTTTCAAAGAAATGTACATATGTTGT
TTTACTGTTATGGTGACTTACATCAAACATTCATTCTGTTGAAGTATATG
CATccaagaaaaaaatgacaaaagaatttACGCCGGGATATACCGATACA
AAATAAAGTATAAAGCAAGAATAAATTAATTTAAAGGAAATGAACTTTTT
AAAGCAATATGACTATTATAGACCACTTTTTAggctcattttcaaatttc
tccgCCAACCTTTTCCTGTCTTGTGTATTCATTTCTATAGACAATTACTG
GGATAGATCTCCATACCACAACAGACACACTAGCTACACTTTTGTTTTAG
TGAAAGTAAAATAGCTCCTAAGGACGTTAGAATTTTCTAATCACGTtaca
tttgtttttgtttttatagttAGCCATATTTTACCTTATTGATAATTTCT
TAGGTcttttttgaaacaaatttcTGTATAATTATGTTGATAGCAGaata
tttaaaattgaaaacacGAAAAAATTGTGCATGTCtgagaagttcttttt
caaaccGAG

Run BLAST on NCBI

protein sequence of TCONS_00069759-protein

>TCONS_00069759-protein ID=TCONS_00069759-protein|Name=TCONS_00069759-protein|organism=Clytia hemisphaerica|type=polypeptide|length=268bp
MAVNVFNTGATSDNLSRHEMLTWINDSLQSNFTKIEQMASGAAYCQFLDM
LFENCVPMKKVKVQAKLEHEYIVNWKLLQNGFKKVGVDKTIPVDKLIKAR
FQDNFEFCQWFKKFFDANYAGQEYDALAIRGGLQPIADGKKPAAAGSRSM
AAPSKSRAAPPKRTAAPKAAPVSKAPSSKGSGVSQQEMDTVTAELSEMKT
SVDGLEKERDFYFGKLRDIEVLCQEEGAVGTPLSEKVLAILYATEDGFAP
PEEEEGAEYIDGGEPEEF

Run BLAST on NCBI

transcript from alignment at scaffold_507:131262..141755+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00069759 ID=TCONS_00069759|Name=TCONS_00069759|organism=Clytia hemisphaerica|type=transcript|length=10494bp|location=Sequence derived from alignment at scaffold_507:131262..141755+ (Clytia hemisphaerica)
GAATCCTTAGattttttcgtaaattttttattatttgcaTTGTTATTTTC
CTCTTACTTATATTccttacctcttttagtaaaaGTTGAATAAAATGGCT
GTCAACGTTTTCAACACTGGCGCAACATCTGACAATCTCAGTCGACATGA
AATGCTAACTTGGATCAATGACAGTTTACaatcaaattttacaaaaatag
aaCAAATGGCTTCAggtatacatttttttaaatcctgaAAATAGTCGTGT
TTCGCGgcattttaatttcgcggttttctgAACTCGACCGCGAAACCACG
AAATTTTCATGCAATGAAGTATTTTGACGGCCAGATGACTATTCTGACGA
CCAATTTTCCACCGGTCGGTGGACGACTATCCACCGATCGAATAACTATC
TAGATGGCCGAATTTCCCACAATTCTAACCCTCTTGGCGACCAGGGCTTG
GGTAGAATCACACAAATAAATCACTGTATTAATCGGATTAATGCACAGCA
GGGGAATAGGAATGGCCAAATACCATGTACCGTGGTTTTTCTAATCTAAC
GCGTAGTCTAATTATTAACGCGTagccaaaattctgcataattaatTTCA
CTCTAATTATTACGCGTGATCAAGccttggaaaagaaaaattagacagga
aagttttatttttgataaacttctttctttcaaaaacacaaattaAAGGG
ATCTTCGTCATCCTCCTCTGGCTCNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNTAATGCTTGTTAATACATTATACGATCTATATGTAAT
ATATATTACACAAGCCTTTAACGCGTACTTAAAACACTTGAATATCGTAA
TTAATTGTTCTCTTGTTTTTCACGCGTAGCgtcgaaaataattatttatt
gccacgcgttaaattagaaaaaacacGGTAGGGTTGCAATTTTTAGCGAA
TATAAAGAAATCAATATtaatcgataacaatcgaaAGCAATCAGCGATTA
ATCGATAGCaatcgataacaatcgaatCCAATCGATAAGAACGTAAAGTC
TTAGTATCGATTGgctatcgattatttatcgattatttatcgatcactat
cgattattatcgattaaaatcgattaatatcgattaatatcgattgATTT
CCCGTATCGATTTCATCGATTGGGTACGCGCCTggttcattgcgtcacag
caaaaagtttgtttttattttagtttgtatctttgaaataccccatcgga
tttaggaagggtgtcggatttaggacgaCTCACagtatttgtttcaatcc
gtgatcctaaggcttaatttttttttctcatcttcaatttactgaagaaa
gcatgaatttgatgcgagagttagattgtcaacaaagtgctgtaaaaaat
aattgaatgaaagaagaacttaagatcttaaatatttaaatttaaatgaa
GAATTGTTGCGAAAAAccaaaccggctgggaacagtagttttgccagaaa
agttttatttttgattggttcaatcgaaataggagatttggaaaaacttt
ttatgcttggttttttgcacaaacccctgtaactatgtgCAAGCACCCCA
TTGCTAAGATattgaaaccactgaaaatgaaagtaaaatcggcccgcaCT
CCAAGTCCagtaatcttgatataggagtttaagcaaAGACTGCCTGTACT
GTACGCAGCAGCAATAAAAATAATCATAACAATACTCAAAAAAATTACGT
TCCCGtcttttttactgttttttgcCTAGGCAAAATAGCATACATAGTAA
GTATATAAGCAGGCTatgcctttaattggctgtaaaaaattTTTGCAACT
GTAGAATTTGGTACAATTTTCAacaatatagaccttttttcaaagaggac
atcctgttgaataattatgtattccagtcataaaaacaatgataaagtcA
TGCATAatttactgtatcatgcatattgtaataattatgcatggttttat
cattgtttttctgctggactacataattattcaacagggtggcctctttg
aaaaaggtctattagggGCCACTCACATATCAATTTTCCCACACTTAAGC
ATCATTCATACGCTAATTAAAAAACCCACCCACCCCCCTACCCTTAGCAT
CATATTATGAAATAAACCGGAAATAGATGAAAACCCTTTTTCCTTTCTCA
CTTCAAGTATTGATGTTCAACTGCCAGAGAAGTTGCTTCCCCCTTCTGTC
TGTTTGGTACATTTCGCTCGCTTGTTTTTCTAATAGTGGTTTTGTTATAT
GACTTTTACACAGATTGGATCCCAGACCCACATTAGTTGTGATGCGGGAA
AAAAAGGCCCCAAACTTTTTTAACATAATGAGCGTCTCCGGCATTTTACT
ATACCAATTTATTCTCAATGCCGTGAAAAAGAGACAAATTTGAAGAAGTG
AGGATGTTTTGTTGAATCTTGAATATGAAGAGGCTGCTACCAGAAAAATA
ATAAGTATGAAAGTTAtagttttctggaaatttgaacaTCTCTTGGACCT
CGAAAATTGATATGTCTAGTAGATTTTCTTAGTGTCACTCTATCTAATCC
ACCCACCCTATAGCTTCGGAATGGCGCTAAGCGCGGTCAAAATCAATATG
TGAGTGCCCCTTTAGAACAattctatttttaaacaaaattaaccatcaaa
ttttttcatcttcctcCTTCATCTTCAATCAAGCACTCAAAATCTACTAA
AGCTGAgtacataagatattcttatgaTTATTGATATTTCCTGAAACACT
GTTTGTTGCGTGCTGCTATGGAGTGCATGACGCAACTCACATAACAACTA
ACGCATAGTGCGCAAGGAGGTTCCAGGTACCACCtaaaaattcaggtccc
acctaacCCTAAAATTCTCACCCTCAATCCAGACTACCAGATCCCAGCTG
AAAAATCCCCACACAAAATTATACTAAATTCAGCAACGAAACAAAAATTC
CTACTGTATAATGATAAAAAGGAGAAAGGTTTAGTATgtaaaagaattat
ttatagAATATGAAATATAGAAGAAATTATAATTGAattggaaataagaa
aaaactaacatACTTTTACCAAAACACCAGACTCCCATCTAAAGAAATTA
ATCCCCACCTTAAACTTATTTGTCCCacctaaaacctgaaaatttccaaa
tcccagctggaaatttttgacccagaACACCAAATCCCCCActatcttgg
ggggggggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNtttttgggggggggggtgcacactatgaaCTTACA
AAGTCCCCTTCTGTTGGATGATCATTTTGGGTGCCTCATcatggaagata
atttgttttgatgctccctggctttgggaagtagtgATGTTTATGGTTGT
TTTCAATGGGAAATAGCAAACTTGAGTTTACATgtatcatttagtttttg
cttttttgtgGATTTTCTGCTAATCCAACGGCAGCGCAGTTTGGTTACTT
TACAAATGTCACTCAAATGTTAATTGTGGCAATGTGTGTTGTCTATGCAT
TTGTTCGCCATTTTTGCCATCATGTCTTGGAAAAATAGTGTTAAGATCCC
AGAAATGTGCCAGGAAAGTTACAACAAATGAGACAATTTAATCCTTAAGT
CAAACTTTCAAAGTGGCAATTACAATGTTTATaactcatcaaaatttttc
tgaaagGGGTGATAAGTGTTGTCTCATCCTTTTCTCTAGTCTATCATTTT
GATAAACCTCAGTTGATTTAGATCactttgttgaatttttaaaagCCCTT
TTAACTatcttactcaaaatttattgtaGTAAATGATACCGTAAGATAAA
ATTCTAGTCCATTTGACAATGCATACTTCTAATTTAAAAAACCTGAACCC
TACTAcaggaccttgaaaaccttgaaaaccttgaaaatggaccactcaac
cttgaaaaccttgaaatccatcaattttctgggaaaacccttgaaaacct
tgagaaatcgctaaaaaccttgaaaagtagTTCTTCATATTCATTCTTTT
TGTCATACAAGCTTTTTAATAGGGCAGTGGCTGAGTCTAGGTTTTTCTCT
AGAATCGCAAATTGAGGTATCTCAATCCCTTTACAATGAActagtttttt
tcattttttctatcaATTGTCTGCTAGTAGTATCTTACCAGATCTTACAA
AACTTATCTGAGAGCAGGGGTCTTATTTTGGCCCGGTGAATGGCAAATTT
CGGCAGCCTAAAGACTCtaaacaaattaaattccctgGTCTTGGAAATCC
ATTTGCTGGCCgatgaaattttgctgctttctATCCAGTCAttcaaaaag
taagaataagtaCGTTCTTAAACTGTTTGTCATggggaaatttccaaaaa
ttgccTGCGACGCTAAACCTTTATAACATTTAGAGAATTCTATATTCACA
TGTTTCTGTTGTGATTCCATGTCTCAAGGAATGCAacatattcttttatc
attagctGAGTTTTTGAGCCCTAGGAAATTGGCTGTTCCCCAATTTTCTT
CAGGCCATTAATCATTCCATTCATATTATGTCACGTTACCCTATTTATGA
ACTGGATACCCCAGAGTATTCTGGTTGACGTCTTGGAACAATGGCCGTTC
ATCCTTAAAATTTCGAGCATCGAAAATAATTTCCTTAAAACAACACTTCT
GCCTTTTGAAAGagtcttaaaaatcaaaattttctcttgtTAGCGCAAAC
CATGGTCACTGTAAACATTTGGCTTTTActtctaattctttatttcgACA
GTTGAAAGACTAGGTAGCCGGAGTTAAAATGTGGTATATATCGTTCTCGA
GAGGGAGATAGGAATTTTACTGTGGAAATAATTCGCCGGCTGCCAAAAgc
caataaattttatttgccgtcctctatttttctttcgcCTAGTaccactc
tgaaaaaaaaaccaaaacctgTTGAGAGCCATGTCAACTGAGTatcaaaa
aaaccttgaaatatGCCAAATCCTTTgccaaaaaccttgaaaaaccactt
aaaaatgaccaaaaaaaccttgaaaaccttgaaaatcctgaaaaaaaatt
tgtagacACCCTGCAGCAATCTTGATTTATTTTACCACTAACAGAAAAAG
CTCCCACCCCCTCCCTAGTACGAAAAGGGTGGACAGAATTCTCTCCTTTT
GAGATATGAATATATACATTCAACTTCCCAGCaagaagaatttaaaaaaa
cattttaacgaCCTCCATTCAGACTCACAAAGCCTAGTTGCAACACAGAT
ATAAAATATTGACTAgctctttcaaaaaaattgactagctctttcaaaaa
aattgtcaaaaaatttgaaattcattaaCATTGAGTCAAATAGAAGACTT
TTTGCTAAACAGGATACTGCATTTTTAGTGCTTCTCGTGTCATATATCGA
GGCGCATATTTCCAGGGGTTTTCTGCTATCAGTTAATGATAGTAGAAACT
CCATCTTAAATTTAGTTTTGAAACTCCTTgataaaaaatatcttttttga
aaaagttttgtaaTCTTGCAAACACTAGGTATTTCTCGTTTGCTCTATTT
GAGTTGTTTTGCTTGATGATTTTTTAACATTTGAGTAGTCTTGTTATATT
TTCTTAGGTAAAAATGTCTTGAGTATACAATATTCTTTCTTAACAAAAGC
AAAACTCTCACCACAAGGGGTCTATCATGCACCCACAGTTAGTGCATTTA
GTAGATTAGATGAATTGTGAAACCTTTTGTTTTTGTCTTCTAACTGAACC
TGAAGGGCTTTGTAAACAAGATTGTTTGGATAtcctgtttaaaatttttc
atttctgaTTTCCTCTTTAGGTGCTGCATATTGTCAATTTCTTGATATGC
TGTTTGAAAGTGAGTCaagtttttattggattttatGATTTGACTGGTTA
TGGATGCATTGTGTTCTGCAGGTTTTTAATGTCCCCTATCTGGGTCCCGA
ATCCCCCATTTGTATTTCTCTTCTCCCTGACCCACCCTTTTCTTCGATTC
CCACACTTGAAGAACTGTCAAGAACAATAAATTTACATCCTCTTTTATAA
CTTAGCAATCGAGTAATATTTCCCTGCAGCAAACATACAAATATATAAAC
ATTTCTGCACTCAGCTGCACTTCACATAAGATGTTTTTGAAATCTCCATT
GGGCTTAGCCCTCCCCATCGAGATAGAAATATTCAATTACCCCTCCTAGA
CAGAAGAGGATCCCATGGCTTTCCTAGTCATATCTATTAATTTCCTTTTC
AGACTGTGTACCAATGAAGAAAGTCAAAGTTCAGGCTAAGTTAGAACATG
AGTACATTGTCAATTGGAAACTGCTACAAAATGGCTTCAAAAAGGTTGGC
GTAGATAAGGTAAGTGGTGGAATGTTTACTTTGAAGCTTATTTCTCTACA
GAGTTTAGGGGTtgacaaatttgattttgatggaCATACAATTGTTGCAC
TTTTACCAATCCTTCTTTTTGGGTATATTTTGATGAGgtagtattatttt
ttgttatcaGGTTTTCTCCTATAATTATTCCACCGTTTTTATCGTGTTAT
TTCCGTTTCCCATAGGTTACCTCATCTTGTTTTGACTTTTCGTTTAGACT
ATACCAGTAGATAAATTGATCAAAGCACGATTCCAAGACAATTTCGAATT
TTGTCAGTGGTTCAAGAAGTTTTTCGATGCAAACTACGCTGGACAAGAGT
ACGACGCATTGGCCATCCGTGGAGGTCTCCAACCCATTGCTGACGGAAAG
AAACCTGCTGCAGCTGGCTCAAGAAGTATGGCAGCTCCCTCAAAGTCAAG
GGCCGCTCCACCCAAACGAACAGCCGCCCCTAAAGCAGCCCCTGTATCAA
AAGCACCAAGTAGTAAAGGGTCAGGTGTTAGCCAACAAGAAATGGACACT
GTAACTGCCGAAGTAAGTTGTACTTGGTTGACTGCCAACAGAAAGAAACT
CTCTATAGTAGGGggggaatttgtaaaatcgctcgacttttttagtcaaa
gcacttatACATTATTGGAAAGGTAAGATGTAGGGGAATCAAAATAACAT
AGGTTCCAATTTTTTTTCGTACACTTTGGTGTGTTTTTCAGATAAATATG
ACGGTCTCAGGCAAAAGTCATAGGGTCAAAATTTAATGAAAATTTTAGCT
TCAGAAAAGAGAGACCTGTTGTATATTTTTGGAAAGCTCTCAAAAATAGT
GTGTTTTTTTTTCAACCAGAAATAGCTTTTTTGTCCACTTTTTGCACTTT
TTGAAGCTCAATGTCTCGAGTTAGGTAGAGAAATCATATATACTCGCAAT
ATATCTCTAATCTTAATTTTTTAAGAGCTTTCCAAAAATATACAACATGT
TTCTCTTTTCTCAAGCTCAAAGCAAGACACCAAAGTGTCTGAAAAAAATT
GGCACCTTTTATATGTCATTTTGATTCCCCTACCCCTTAGACTTCCAAAA
ATGTATAACAAGTGCTTTGACTAAAAAAGTCGAGTGACCTCCAAAAATCG
AACAAATTCCCCCCTACTACTATGTTATTTGGGTAAACTGGATCGAAACA
AAGCAAAGTTTTCTGTCATCATTCTTCAGAAATGTCAAAAAGAATTTAAG
TCGATTACGACAAAAACGAAACTGTTCTGTTTGAAGTATAAAAGTAACGT
GAATATCGATATTCAGTTTTTTCATTACTTTCTAGCTCTCAGAAATGAAG
ACTAGCGTGGACGGATTGGAAAAAGAGCGAGATTTTTATTTCGGCAAATT
ACGTGATATCGAAGTATTGTGTCAAGAAGAAGGAGCAGTGGGAACACCCC
TTAGTGAAAAAGTACTGGCCATCTTATACGCAACTgaggtatttttttct
tttgataaattGAAGGAATTGACTCCCCCGTCTTCATTGTCATGNAGAAA
TGGACACTGTAACTGCCGAAGTAAGTTGTACTTGGTTGACTGCCAACAGA
AAGAAACTCTCTATAGTAGGGggggaatttgtaaaatcgctcgacttttt
tagtcaaagcacttatACATTATTGGAAAGGTAAGatgtaggggaatcaa
aataacataggttccaattttttttcgtacactttggtgtgtttttcaga
taaatatgacggtctcaggcaaaagtcatagggtcaaaatttaatgaaaa
ttttagcttcagaaaagagagacctgttgtatatttttggaaagctctca
aaaatagtgtgtttttttttcaaccagaaatagcttttttgtccactttt
tgcactttttgaagctcaatgtCTCGAGTTAGGTAGAGAAATCAtatata
ctcgcaatatatctctaatcttaattttttaagagctttccaaaaatata
caacatgtTTCTCTTTTCTCAAGCTCAAAGCAAGACACCaaagtgtctga
aaaaaattggcaccttttatatgtcattttgattcccctaccccttagac
ttccaaaaatgtataacaagtgctttgactaaaaaagtcgagtgACCTCC
AAAAATCGAACAAATTCCCCCCTACTACTATGTTATTTGGGTAAACTGGA
TCGAAACAAAGCAAAGTTTTCTGTCATCATTCTTCAGAAATGTCAAAAAG
AATTTAAGTCGATTACGACAAAAACGAAACTGTTCTGTTTGAAGTATAAA
AGTAACGTGAATATCGATATTCAGTTTTTTCATTACTTTCTAGCTCTCAG
AAATGAAGACTAGCGTGGACGGATTGGAAAAAGAGCGAGATTTTTATTTC
GGCAAATTACGTGATATCGAAGTATTGTGTCAAGAAGAAGGAGCAGTGGG
AACACCCCTTAGTGAAAAAGTACTGGCCATCTTATACGCAACTgaggtat
ttttttcttttgataaattGAAGGAATTGACTCCCCCGTCTTCATTGTCA
TGTTACTTTTGATTgacttttctttcatttcgcggaAATTAAAGTAGCGC
TGTGTCAATTATTCGAATCGACTATTTTGATCGTAAAGCACGTGCACACT
CAGGAAAATGGTTTTTTAAAGCACGATAATGAAGGAATTAGATAATCACG
TATCCGTTTCCATTTGTCGGACGTTTTGTTGTCCTCTCATGCTATCGTCT
CATATCCGATtaataaaccttactccataactcgaagttTCCTTGATTCG
AGCAGTTTTGTGTTCCTCGTGGGTGCCCGAGTTATGGAAACTCGACTGAG
AAAGATAAAGgtcttagaaaaaaataaatgcgAAGTTTATTATATCGGCC
GTTCAAATTTAGTAACCTCACTAGTTTTGTAGCTAGATGGACTCGAACGT
TACAAAAGTCAGCGTAGTTTAGAATGCAATTTCCCTTCGTCAAATACTTC
TTTGAACATTTTAGGATGGTTTCGCACCACCGGAAGAAGAAGAAGGGGCA
GAATATATCGATGGAGGTGAACCTGAAGAATTCTAAATCGCATCCCTCGT
TCGTACACATCACACACAAAAAAGTTGATCCGAATATTATTTTATTGGTT
TTCTAAAAGATTCCGGGTTCAACTAATTGTTGTTGACGTTAAAAGACATT
TTGAAAACGTTCTGTCTTGGGGACTGTTGTTCAACATGCATTAGTTGAAC
TGTGTGTGTGTTTCAAAGAAATGTACATATGTTGTTTTACTGTTATGGTG
ACTTACATCAAACATTCATTCTGTTGAAGTATATGCATccaagaaaaaaa
tgacaaaagaatttACGCCGGGATATACCGATACAAAATAAAGTATAAAG
CAAGAATAAATTAATTTAAAGGAAATGAACTTTTTAAAGCAATATGACTA
TTATAGACCACTTTTTAggctcattttcaaatttctccgCCAACCTTTTC
CTGTCTTGTGTATTCATTTCTATAGACAATTACTGGGATAGATCTCCATA
CCACAACAGACACACTAGCTACACTTTTGTTTTAGTGAAAGTAAAATAGC
TCCTAAGGACGTTAGAATTTTCTAATCACGTtacatttgtttttgttttt
atagttAGCCATATTTTACCTTATTGATAATTTCTTAGGTcttttttgaa
acaaatttcTGTATAATTATGTTGATAGCAGaatatttaaaattgaaaac
acGAAAAAATTGTGCATGTCtgagaagttctttttcaaaccGAG

Coding sequence (CDS) from alignment at scaffold_507:131262..141755+

>TCONS_00069759 ID=TCONS_00069759|Name=TCONS_00069759|organism=Clytia hemisphaerica|type=CDS|length=4842bp|location=Sequence derived from alignment at scaffold_507:131262..141755+ (Clytia hemisphaerica)
ATGGCTGTCAACGTTTTCAACACTGGCGCAACATCTGACAATCTCAGTCG
ACATGAAATGCTAACTTGGATCAATGACAGTTTACaatcaaattttacaa
aaatagaaCAAATGGCTTCAgGTGCTGCATATTGTCAATTTCTTGATATG
CTGTTTGAAAACTGTGTACCAATGAAGAAAGTCAAAGTTCAGGCTAAGTT
AGAACATGAGTACATTGTCAATTGGAAACTGCTACAAAATGGCTTCAAAA
AGGTTGGCGTAGATAAGACTATACCAGTAGATAAATTGATCAAAGCACGA
TTCCAAGACAATTTCGAATTTTGTCAGTGGTTCAAGAAGTTTTTCGATGC
AAACTACGCTGGACAAGAGTACGACGCATTGGCCATCCGTGGAGGTCTCC
AACCCATTGCTGACGGAAAGAAACCTGCTGCAGCTGGCTCAAGAAGTATG
GCAGCTCCCTCAAAGTCAAGGGCCGCTCCACCCAAACGAACAGCCGCCCC
TAAAGCAGCCCCTGTATCAAAAGCACCAAGTAGTAAAGGGTCAGGTGTTA
GCCAACAAGAAATGGACACTGTAACTGCCGAACTCTCAGAAATGAAGACT
AGCGTGGACGGATTGGAAAAAGAGCGAGATTTTTATTTCGGCAAATTACG
TGATATCGAAGTATTGTGTCAAGAAGAAGGAGCAGTGGGAACACCCCTTA
GTGAAAAAGTACTGGCCATCTTATACGCAACTgagGATGGTTTCGCACCA
CCGGAAGAAGAAGAAGGGGCAGAATATATCGATGGAGGTGAACCTGAAGA
ATTCTAAATGGCTGTCAACGTTTTCAACACTGGCGCAACATCTGACAATC
TCAGTCGACATGAAATGCTAACTTGGATCAATGACAGTTTACaatcaaat
tttacaaaaatagaaCAAATGGCTTCAgGTGCTGCATATTGTCAATTTCT
TGATATGCTGTTTGAAAACTGTGTACCAATGAAGAAAGTCAAAGTTCAGG
CTAAGTTAGAACATGAGTACATTGTCAATTGGAAACTGCTACAAAATGGC
TTCAAAAAGGTTGGCGTAGATAAGACTATACCAGTAGATAAATTGATCAA
AGCACGATTCCAAGACAATTTCGAATTTTGTCAGTGGTTCAAGAAGTTTT
TCGATGCAAACTACGCTGGACAAGAGTACGACGCATTGGCCATCCGTGGA
GGTCTCCAACCCATTGCTGACGGAAAGAAACCTGCTGCAGCTGGCTCAAG
AAGTATGGCAGCTCCCTCAAAGTCAAGGGCCGCTCCACCCAAACGAACAG
CCGCCCCTAAAGCAGCCCCTGTATCAAAAGCACCAAGTAGTAAAGGGTCA
GGTGTTAGCCAACAAGAAATGGACACTGTAACTGCCGAACTCTCAGAAAT
GAAGACTAGCGTGGACGGATTGGAAAAAGAGCGAGATTTTTATTTCGGCA
AATTACGTGATATCGAAGTATTGTGTCAAGAAGAAGGAGCAGTGGGAACA
CCCCTTAGTGAAAAAGTACTGGCCATCTTATACGCAACTgagGATGGTTT
CGCACCACCGGAAGAAGAAGAAGGGGCAGAATATATCGATGGAGGTGAAC
CTGAAGAATTCTAAATGGCTGTCAACGTTTTCAACACTGGCGCAACATCT
GACAATCTCAGTCGACATGAAATGCTAACTTGGATCAATGACAGTTTACa
atcaaattttacaaaaatagaaCAAATGGCTTCAgGTGCTGCATATTGTC
AATTTCTTGATATGCTGTTTGAAAACTGTGTACCAATGAAGAAAGTCAAA
GTTCAGGCTAAGTTAGAACATGAGTACATTGTCAATTGGAAACTGCTACA
AAATGGCTTCAAAAAGGTTGGCGTAGATAAGACTATACCAGTAGATAAAT
TGATCAAAGCACGATTCCAAGACAATTTCGAATTTTGTCAGTGGTTCAAG
AAGTTTTTCGATGCAAACTACGCTGGACAAGAGTACGACGCATTGGCCAT
CCGTGGAGGTCTCCAACCCATTGCTGACGGAAAGAAACCTGCTGCAGCTG
GCTCAAGAAGTATGGCAGCTCCCTCAAAGTCAAGGGCCGCTCCACCCAAA
CGAACAGCCGCCCCTAAAGCAGCCCCTGTATCAAAAGCACCAAGTAGTAA
AGGGTCAGGTGTTAGCCAACAAGAAATGGACACTGTAACTGCCGAACTCT
CAGAAATGAAGACTAGCGTGGACGGATTGGAAAAAGAGCGAGATTTTTAT
TTCGGCAAATTACGTGATATCGAAGTATTGTGTCAAGAAGAAGGAGCAGT
GGGAACACCCCTTAGTGAAAAAGTACTGGCCATCTTATACGCAACTgagG
ATGGTTTCGCACCACCGGAAGAAGAAGAAGGGGCAGAATATATCGATGGA
GGTGAACCTGAAGAATTCTAAATGGCTGTCAACGTTTTCAACACTGGCGC
AACATCTGACAATCTCAGTCGACATGAAATGCTAACTTGGATCAATGACA
GTTTACaatcaaattttacaaaaatagaaCAAATGGCTTCAgGTGCTGCA
TATTGTCAATTTCTTGATATGCTGTTTGAAAACTGTGTACCAATGAAGAA
AGTCAAAGTTCAGGCTAAGTTAGAACATGAGTACATTGTCAATTGGAAAC
TGCTACAAAATGGCTTCAAAAAGGTTGGCGTAGATAAGACTATACCAGTA
GATAAATTGATCAAAGCACGATTCCAAGACAATTTCGAATTTTGTCAGTG
GTTCAAGAAGTTTTTCGATGCAAACTACGCTGGACAAGAGTACGACGCAT
TGGCCATCCGTGGAGGTCTCCAACCCATTGCTGACGGAAAGAAACCTGCT
GCAGCTGGCTCAAGAAGTATGGCAGCTCCCTCAAAGTCAAGGGCCGCTCC
ACCCAAACGAACAGCCGCCCCTAAAGCAGCCCCTGTATCAAAAGCACCAA
GTAGTAAAGGGTCAGGTGTTAGCCAACAAGAAATGGACACTGTAACTGCC
GAACTCTCAGAAATGAAGACTAGCGTGGACGGATTGGAAAAAGAGCGAGA
TTTTTATTTCGGCAAATTACGTGATATCGAAGTATTGTGTCAAGAAGAAG
GAGCAGTGGGAACACCCCTTAGTGAAAAAGTACTGGCCATCTTATACGCA
ACTgagGATGGTTTCGCACCACCGGAAGAAGAAGAAGGGGCAGAATATAT
CGATGGAGGTGAACCTGAAGAATTCTAAATGGCTGTCAACGTTTTCAACA
CTGGCGCAACATCTGACAATCTCAGTCGACATGAAATGCTAACTTGGATC
AATGACAGTTTACaatcaaattttacaaaaatagaaCAAATGGCTTCAgG
TGCTGCATATTGTCAATTTCTTGATATGCTGTTTGAAAACTGTGTACCAA
TGAAGAAAGTCAAAGTTCAGGCTAAGTTAGAACATGAGTACATTGTCAAT
TGGAAACTGCTACAAAATGGCTTCAAAAAGGTTGGCGTAGATAAGACTAT
ACCAGTAGATAAATTGATCAAAGCACGATTCCAAGACAATTTCGAATTTT
GTCAGTGGTTCAAGAAGTTTTTCGATGCAAACTACGCTGGACAAGAGTAC
GACGCATTGGCCATCCGTGGAGGTCTCCAACCCATTGCTGACGGAAAGAA
ACCTGCTGCAGCTGGCTCAAGAAGTATGGCAGCTCCCTCAAAGTCAAGGG
CCGCTCCACCCAAACGAACAGCCGCCCCTAAAGCAGCCCCTGTATCAAAA
GCACCAAGTAGTAAAGGGTCAGGTGTTAGCCAACAAGAAATGGACACTGT
AACTGCCGAACTCTCAGAAATGAAGACTAGCGTGGACGGATTGGAAAAAG
AGCGAGATTTTTATTTCGGCAAATTACGTGATATCGAAGTATTGTGTCAA
GAAGAAGGAGCAGTGGGAACACCCCTTAGTGAAAAAGTACTGGCCATCTT
ATACGCAACTgagGATGGTTTCGCACCACCGGAAGAAGAAGAAGGGGCAG
AATATATCGATGGAGGTGAACCTGAAGAATTCTAAATGGCTGTCAACGTT
TTCAACACTGGCGCAACATCTGACAATCTCAGTCGACATGAAATGCTAAC
TTGGATCAATGACAGTTTACaatcaaattttacaaaaatagaaCAAATGG
CTTCAgGTGCTGCATATTGTCAATTTCTTGATATGCTGTTTGAAAACTGT
GTACCAATGAAGAAAGTCAAAGTTCAGGCTAAGTTAGAACATGAGTACAT
TGTCAATTGGAAACTGCTACAAAATGGCTTCAAAAAGGTTGGCGTAGATA
AGACTATACCAGTAGATAAATTGATCAAAGCACGATTCCAAGACAATTTC
GAATTTTGTCAGTGGTTCAAGAAGTTTTTCGATGCAAACTACGCTGGACA
AGAGTACGACGCATTGGCCATCCGTGGAGGTCTCCAACCCATTGCTGACG
GAAAGAAACCTGCTGCAGCTGGCTCAAGAAGTATGGCAGCTCCCTCAAAG
TCAAGGGCCGCTCCACCCAAACGAACAGCCGCCCCTAAAGCAGCCCCTGT
ATCAAAAGCACCAAGTAGTAAAGGGTCAGGTGTTAGCCAACAAGAAATGG
ACACTGTAACTGCCGAACTCTCAGAAATGAAGACTAGCGTGGACGGATTG
GAAAAAGAGCGAGATTTTTATTTCGGCAAATTACGTGATATCGAAGTATT
GTGTCAAGAAGAAGGAGCAGTGGGAACACCCCTTAGTGAAAAAGTACTGG
CCATCTTATACGCAACTgagGATGGTTTCGCACCACCGGAAGAAGAAGAA
GGGGCAGAATATATCGATGGAGGTGAACCTGAAGAATTCTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_043437	XLOC_043437	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00069759-protein	TCONS_00069759-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_507	supercontig	scaffold_507:131262..141755 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
240.678	234.625	386.734	426.234	76.3791	55.1708	103.23	109.957	91.8888	102.472	73.9799	50.5723	71.8809	63.421	75.8835	101.046	107.616	107.203	37.3769	45.5252	89.9935	94.1851	112.402	106.72	124.625	133.273	87.8774	68.2899	75.1689	72.0288

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR004953	EB1_C
IPR001715	CH-domain

Vocabulary: **Molecular Function**
Term	Definition
GO:0008017	microtubule binding
GO:0005515	protein binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008017	microtubule binding
molecular_function	GO:0005515	protein binding

Blast

[Close]

BLAST of TCONS_00069759 vs. Swiss-Prot (Human)
Match: MARE1 (Microtubule-associated protein RP/EB family member 1 OS=Homo sapiens GN=MAPRE1 PE=1 SV=3)

HSP 1 Score: 247.669 bits (631), Expect = 3.473e-77
Identity = 133/249 (53.41%), Postives = 165/249 (66.27%), Query Frame = 2

Query:   95 MAVNVFNTGATSDNLSRHEMLTWINDSLQSNFTKIEQMASGAAYCQFLDMLFENCVPMKKVKVQAKLEHEYIVNWKLLQNGFKKVGVDKTIPVDKLIKARFQDNFEFCQWFKKFFDANYAGQEYDALAIRGGLQ-PIADGKKPAAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQEMDTVTAELSE----MKTSVDGLEKERDFYFGKLRDIEVLCQEEGAVGTPLSEKVLAILYAT 826
            MAVNV++T  TSDNLSRH+ML WIN+SLQ N TKIEQ+ SGAAYCQF+DMLF   + +KKVK QAKLEHEYI N+K+LQ GFK++GVDK IPVDKL+K +FQDNFEF QWFKKFFDANY G++YD +A R G +  +A      A         S S A     +    AA     P            D   AEL +    +K +V+ LEKERDFYFGKLR+IE++CQE      P+ ++++ ILYAT
Sbjct:    1 MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDGKDYDPVAARQGQETAVAPSLVAPALNKPKKPLTSSSAAPQRPISTQRTAAAPKAGPGVVRKNPGVGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENDPVLQRIVDILYAT 249

The following BLAST results are available for this feature:

BLAST of TCONS_00069759 vs. Swiss-Prot (Human)

BLAST of TCONS_00069759 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MARE1	3.473e-77	53.41	Microtubule-associated protein RP/EB family member...	[more]

You are here

TCONS_00069759 (transcript) - C. hemisphaerica