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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069498 ID=TCONS_00069498|Name=TCONS_00069498|organism=Clytia hemisphaerica|type=transcript|length=1736bpRun BLAST on NCBI protein sequence of TCONS_00069498-protein >TCONS_00069498-protein ID=TCONS_00069498-protein|Name=TCONS_00069498-protein|organism=Clytia hemisphaerica|type=polypeptide|length=365bp SFRTSARSWKKGRTCSLRSVVCNKRGVLTTIQRLGISSSSVCQCETAPPQRun BLAST on NCBI transcript from alignment at scaffold_501:3512..16668+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00069498 ID=TCONS_00069498|Name=TCONS_00069498|organism=Clytia hemisphaerica|type=transcript|length=13157bp|location=Sequence derived from alignment at scaffold_501:3512..16668+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_501:3512..16668+ >TCONS_00069498 ID=TCONS_00069498|Name=TCONS_00069498|organism=Clytia hemisphaerica|type=CDS|length=9882bp|location=Sequence derived from alignment at scaffold_501:3512..16668+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00069498 vs. Swiss-Prot (Human)
Match: 3HIDH (3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Homo sapiens GN=HIBADH PE=1 SV=2) HSP 1 Score: 365.925 bits (938), Expect = 1.769e-121 Identity = 172/274 (62.77%), Postives = 217/274 (79.20%), Query Frame = 1
Query: 262 KDGYNLVVYDVYPEAMKPFKELGSTAVTSPRMVAEQVTKIITMLPSSPDVFEAYNGDQGILRGMQPDTLMIDSSTIDPSASKEVATIAADAGGTYIDAPVSGGVVAARDGALTFMVGAKREDFEQAEILLTSMAKNVVHCGATGTGQAAKICNNMLLAVSMIGTAEVMNMGTRLGLDKKMLAHILNISTGRCWSSELYNPCPGVIEGVPSSNDYQGGFGTQLMTKDLGLAQNASTATKSATPMGSLAHQIYRVMCNSGYAKMDFSSVYKFLRED 1083
K GY L++YDV+P+A K F++ G V+SP VAE+ +IITMLP+S + EAY+G GIL+ ++ +L+IDSSTIDP+ SKE+A G ++DAPVSGGV AAR G LTFMVG ++F A+ LL M NVV+CGA GTGQAAKICNNMLLA+SMIGTAE MN+G RLGLD K+LA ILN+S+GRCWSS+ YNP PGV++GVPS+N+YQGGFGT LM KDLGLAQ+++T+TKS +GSLAHQIYR+MC GY+K DFSSV++FLRE+
Sbjct: 60 KHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGTTLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQFLREE 333 The following BLAST results are available for this feature:
BLAST of TCONS_00069498 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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