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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069420 ID=TCONS_00069420|Name=TCONS_00069420|organism=Clytia hemisphaerica|type=transcript|length=965bp
AGATAATCGAGCGCCGTCAAAACATGAAATCGAAAGAagaagtgaaattt
tttttttcaaagttttgatttttgacacAAAATCATGGTTGCCTGGTATT
TTGATCGACTGCTCATTTTGATGTGAGCAAGAATGTCTTGTAATATGTTA
TTTTTATGATGAACTTAAAGCTGGCTCAAAATATCAACATgagattttca
actttttgctgTTCTTTGCTTTTTGTTTTTGCAATAAACTTTGATCTCGA
TTCCTTCGTGAAAGCCCACGATGAAGATTCTGATGGGATTGAAGAGGATG
AACATTTGGTTCATATTGGAAACATTGACAAAGACTCTTGTACAGTTGAT
AAAGAAATGGAGGTCACTTTCGCAGGCGTGACTGTGGTTTGTGGGGAGAA
TTATTTTTTGGCTGGGTTCAATAAGAAACCGAAAGTGGTACTTAACAGAG
CCAATATCAATATCTATTACACACTGGTGATGTTAGATCCCGATGCACCG
AGTAGAAAAGATCCTTCACAAAGAAGTTGGCTTCATTGGCTCATTGTAAA
CATTCATAATGCAGACATTTCGACTGGATTTGAAGTCGTAGAATACAACC
CACCTACACCACCCAAAAACTCCGGTTTCCATCGCTACGTATTCCTTCTA
ATTGTTCagccaaagaaagaaaaagaatatcttCCAATCGTCAAGCGTGG
AAAGTTCAACATCAATAAATACGCAACTAATCATAGCTTGACAAATCTTG
CGGGACTAAcatattttcaaactaaaaaagaaGATAAACTCCAACTTCCA
GCTAATGCAGATTGAGTGACAGAATAACAAATATGATATTTTAGGAAGTA
TGTTAAAGACTTTCATTTGCAGTCGAAGAATTATTTATaaagattatatt
tttatacataactatggtggcccataagtgccaagtaattttttattgaa
aaactcaaaaaaaaa Run BLAST on NCBI transcript from alignment at scaffold_5:209619..213636+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069420 ID=TCONS_00069420|Name=TCONS_00069420|organism=Clytia hemisphaerica|type=transcript|length=4018bp|location=Sequence derived from alignment at scaffold_5:209619..213636+ (Clytia hemisphaerica)
AGATAATCGAGCGCCGTCAAAACATGAAATCGAAAGAagaagtgaaattt
tttttttcaaagttttgatttttgacacAAAATCATGGTTGCCTGGTATT
TTGATCGACTGCTCATTTTGATGTGAGCAAGAATGTCTTGTAATATGTTA
TTTTTATGATGAACTTAAAGCTGGCTCAAAATATCAACATgagattttca
actttttgctgTTCTTTGCTTTTTGTTTTTGCAATAAACTTTGATCTCGA
TTCCTTCGTGAAAGCCCACGATGAAGATTCTGATGGGATTGAAGAGGATG
AACATTTGGTTCATATTGGAAACATTGACAAAGACTCTTGTACAGTTGAT
AAAGAAATGGAGGTCACTTTCGCAGGCGTGACTGTGGTTTGTGGGGAGAA
TTATTTTTTGGCTGGGTTCAATAAGAAACCGAAAGTGGTACTTAACAGAG
CCAATATCGTAAGCACATTTTTATAAAGCcctttgaagtcaaaaagattC
TATACACTAATGAAAGAATAAGAGAATAAGTCTAAATGAATAAATCAGAG
AAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNccccccccccccccgggatcgTTGCAAAGCAAAACACTCTCTAA
CCTTAATAATAATGGCATTTAGAATTTTTCGGTTCTCTAATGTAGTATGA
CGGCATTTGCAATTCTAACAGCCAACCCAAAGCTGCAATTCAGACTAATA
AATAAGCTGTCCTGTTTTGTTTTCAGAATATCTATTACACACTGGTGATG
TTAGATCCCGATGCACCGAGTAGAAAAGATCCTTCACAAAGAAGTTGGCT
TCATTGGCTCATTGTAAACATTCATGTAAGCAAAGTATCGAATGgaaata
attttgaattaaattaaattaaaatagctggaaaaaaattcaagaaaagt
tTTGGTAAATTTGGTAAACTTCTTATAATCAAGGCTACTCAGAACTAAAC
TTGTTATCAATGAATGGTCTAgtaattcatgatatacaccattgcaatgt
cttctgatattacatcatggacccaatagctgattggttgtaagtgacgt
aaaatcagtcaatacgtcacactttcaaccaatcagctattgggttcgtg
gaagacattgcaattctgcaatggtgcatatcatgaataccagATTCCAA
ACCTTTTTTCTAGAATGCAGACATTTCGACTGGATTTGAAGTCGTAGGTA
AAAACATTTTACTCCATTAAATCTTGGTTATCAAAAGTAAAAGGCAAACG
GAATAACGAGGGATAACGGATAAATTTCCTGATAATTTCCAAGTTGTTAA
AAAGAGTATGGCttgtagtgtggtcgtgttacaaaaatacagactgtttg
taggaaaaaataagatttagctgaaactttctccagaccttctctatagg
atgcttatatctcaggaaaaatcccctaaaatcccactggtggaacatct
cttttttgggcaatttcttttttccccaggcaaaatcctaagagcgaaat
tttttgaaaatttcaaacttatttccagacgaaagctctcgaaaaactat
atagaagacttttaaacggttatagccgATTTCCTTACATAACTCAAGAC
CCCACTATAATGATTTTGGAGGTATTCGAATCTCGTCAGAACATTCAAAT
GAAAACGCAAAACTTCCGTGGTCGAGTGAGGTGCAAGTTATCACATGTGG
ATGAAATATTTACttattatttatcttttttcagAATACAACCCACCTAC
ACCACCCAAAAACTCCGGTTTCCATCGCTACGTATTCCTTCTAATTGTTC
agccaaagaaagaaaaagaatatcttCCAATCGTCAAGCGTGGAAAGTTC
AACATCAATAAATACGCAACTAATCATAGCTTGACAAATCTTGCGGGACT
AAcatattttcaaactaaaaaagaaGATAAACTCCAACTTCCAGCTAATG
CAGATTGAGTGACAGAATAACAAATATGATATTTTAGGAAGTATGTTAAA
GACTTTCATTTGCAGTCGAAGAATTATTTATaaagattatatttttatac
ataactatggtggcccataagtgccaagtaattttttcttgaaaaactca
aaaaaaaatttttttatacatgaaaataactttcattCTACAATTTAAAT
TGGCTctcatttcaaaatcaatttaaaagtaatttcgttttcaaaatggc
tttaaaaacaacttaaaataCGACCCAGCAAGGCCACACAAatgatttaa
attttgttttaattNNNNNNNNNNNNNNacactttcaaccaatcagctat
tgggttcgtggaagacattgcaattctgcaatggtgcatatcatgaatac
cagATTCCAAACCTTTTTTCTAGAATGCAGACATTTCGACTGGATTTGAA
GTCGTAGGTAAAAACATTTTACTCCATTAAATCTTGGTTATCAAAAGTAA
AAGGCAAACGGAATAACGAGGGATAACGGATAAATTTCCTGATAATTTCC
AAGTTGTTAAAAAGAGTATGGCttgtagtgtggtcgtgttacaaaaatac
agactgtttgtaggaaaaaataagatttagctgaaactttctccagacct
tctctataggatgcttatatctcaggaaaaatcccctaaaatcccactgg
tggaacatctcttttttgggcaatttcttttttccccaggcaaaatccta
agagcgaaattttttgaaaatttcaaacttatttccagacgaaagctctc
gaaaaactatatagaagacttttaaacggttatagccgATTTCCTTACAT
AACTCAAGACCCCACTATAATGATTTTGGAGGTATTCGAATCTCGTCAGA
ACATTCAAATGAAAACGCAAAACTTCCGTGGTCGAGTGAGGTGCAAGTTA
TCACATGTGGATGAAATATTTACttattatttatcttttttcagAATACA
ACCCACCTACACCACCCAAAAACTCCGGTTTCCATCGCTACGTATTCCTT
CTAATTGTTCagccaaagaaagaaaaagaatatcttCCAATCGTCAAGCG
TGGAAAGTTCAACATCAATAAATACGCAACTAATCATAGCTTGACAAATC
TTGCGGGACTAAcatattttcaaactaaaaaagaaGATAAACTCCAACTT
CCAGCTAATGCAGATTGAGTGACAGAATAACAAATATGATATTTTAGGAA
GTATGTTAAAGACTTTCATTTGCAGTCGAAGAATTATTTATaaagattat
atttttatacataactatggtggcccataagtgccaagtaattttttatt
gaaaaactcaaaaaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069420-exon-scaffold_5-1491911889:209619..210076 | TCONS_00069420-exon-scaffold_5-1491911889:209619..210076 | Clytia hemisphaerica | exon |
| TCONS_00069420-exon-scaffold_5-1510915933:209619..210076 | TCONS_00069420-exon-scaffold_5-1510915933:209619..210076 | Clytia hemisphaerica | exon |
| TCONS_00069420-exon-scaffold_5-1575043694:209619..210076 | TCONS_00069420-exon-scaffold_5-1575043694:209619..210076 | Clytia hemisphaerica | exon |
| TCONS_00069420-exon-scaffold_5-1491911889:211045..211143 | TCONS_00069420-exon-scaffold_5-1491911889:211045..211143 | Clytia hemisphaerica | exon |
| TCONS_00069420-exon-scaffold_5-1510915933:211045..211143 | TCONS_00069420-exon-scaffold_5-1510915933:211045..211143 | Clytia hemisphaerica | exon |
| TCONS_00069420-exon-scaffold_5-1575043694:211045..211143 | TCONS_00069420-exon-scaffold_5-1575043694:211045..211143 | Clytia hemisphaerica | exon |
| TCONS_00069420-exon-scaffold_5-1491911889:211482..211515 | TCONS_00069420-exon-scaffold_5-1491911889:211482..211515 | Clytia hemisphaerica | exon |
| TCONS_00069420-exon-scaffold_5-1510915933:211482..211515 | TCONS_00069420-exon-scaffold_5-1510915933:211482..211515 | Clytia hemisphaerica | exon |
| TCONS_00069420-exon-scaffold_5-1575043694:211482..211515 | TCONS_00069420-exon-scaffold_5-1575043694:211482..211515 | Clytia hemisphaerica | exon |
| TCONS_00069420-exon-scaffold_5-1491911889:213263..213636 | TCONS_00069420-exon-scaffold_5-1491911889:213263..213636 | Clytia hemisphaerica | exon |
| TCONS_00069420-exon-scaffold_5-1510915933:213263..213636 | TCONS_00069420-exon-scaffold_5-1510915933:213263..213636 | Clytia hemisphaerica | exon |
| TCONS_00069420-exon-scaffold_5-1575043694:213263..213636 | TCONS_00069420-exon-scaffold_5-1575043694:213263..213636 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:209619..213636 + |
Blast
BLAST of TCONS_00069420 vs. Swiss-Prot (Human)
Match: PEBP1 (Phosphatidylethanolamine-binding protein 1 OS=Homo sapiens GN=PEBP1 PE=1 SV=3) HSP 1 Score: 87.8113 bits (216), Expect = 1.439e-20 Identity = 53/151 (35.10%), Postives = 78/151 (51.66%), Query Frame = 3
Query: 357 MEVTFAGVTV-VCGENYFLAGFNKKP-KVVLNRANINIYYTLVMLDPDAPSRKDPSQRSWLHWLIVNIHNADISTGFEVVEYNPPTPPKNSGFHRYVFLLIVQPKKEKEYLPIVK------RGKFNINKYATNHSLTNLAGLTYFQTKKED 785
+ VT+AG V G+ +P + + + YTLV+ DPDAPSRKDP R W H+L+VN+ DIS+G + +Y PPK +G HRYV+L+ Q + K PI+ RGKF + + + L T +Q + +D
Sbjct: 25 LHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDD 175
The following BLAST results are available for this feature:
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