TCONS_00069420 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069420
Unique NameTCONS_00069420
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length965

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069420 ID=TCONS_00069420|Name=TCONS_00069420|organism=Clytia hemisphaerica|type=transcript|length=965bp
AGATAATCGAGCGCCGTCAAAACATGAAATCGAAAGAagaagtgaaattt
tttttttcaaagttttgatttttgacacAAAATCATGGTTGCCTGGTATT
TTGATCGACTGCTCATTTTGATGTGAGCAAGAATGTCTTGTAATATGTTA
TTTTTATGATGAACTTAAAGCTGGCTCAAAATATCAACATgagattttca
actttttgctgTTCTTTGCTTTTTGTTTTTGCAATAAACTTTGATCTCGA
TTCCTTCGTGAAAGCCCACGATGAAGATTCTGATGGGATTGAAGAGGATG
AACATTTGGTTCATATTGGAAACATTGACAAAGACTCTTGTACAGTTGAT
AAAGAAATGGAGGTCACTTTCGCAGGCGTGACTGTGGTTTGTGGGGAGAA
TTATTTTTTGGCTGGGTTCAATAAGAAACCGAAAGTGGTACTTAACAGAG
CCAATATCAATATCTATTACACACTGGTGATGTTAGATCCCGATGCACCG
AGTAGAAAAGATCCTTCACAAAGAAGTTGGCTTCATTGGCTCATTGTAAA
CATTCATAATGCAGACATTTCGACTGGATTTGAAGTCGTAGAATACAACC
CACCTACACCACCCAAAAACTCCGGTTTCCATCGCTACGTATTCCTTCTA
ATTGTTCagccaaagaaagaaaaagaatatcttCCAATCGTCAAGCGTGG
AAAGTTCAACATCAATAAATACGCAACTAATCATAGCTTGACAAATCTTG
CGGGACTAAcatattttcaaactaaaaaagaaGATAAACTCCAACTTCCA
GCTAATGCAGATTGAGTGACAGAATAACAAATATGATATTTTAGGAAGTA
TGTTAAAGACTTTCATTTGCAGTCGAAGAATTATTTATaaagattatatt
tttatacataactatggtggcccataagtgccaagtaattttttattgaa
aaactcaaaaaaaaa
Run BLAST on NCBI

transcript from alignment at scaffold_5:209619..213636+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069420 ID=TCONS_00069420|Name=TCONS_00069420|organism=Clytia hemisphaerica|type=transcript|length=4018bp|location=Sequence derived from alignment at scaffold_5:209619..213636+ (Clytia hemisphaerica)
AGATAATCGAGCGCCGTCAAAACATGAAATCGAAAGAagaagtgaaattt
tttttttcaaagttttgatttttgacacAAAATCATGGTTGCCTGGTATT
TTGATCGACTGCTCATTTTGATGTGAGCAAGAATGTCTTGTAATATGTTA
TTTTTATGATGAACTTAAAGCTGGCTCAAAATATCAACATgagattttca
actttttgctgTTCTTTGCTTTTTGTTTTTGCAATAAACTTTGATCTCGA
TTCCTTCGTGAAAGCCCACGATGAAGATTCTGATGGGATTGAAGAGGATG
AACATTTGGTTCATATTGGAAACATTGACAAAGACTCTTGTACAGTTGAT
AAAGAAATGGAGGTCACTTTCGCAGGCGTGACTGTGGTTTGTGGGGAGAA
TTATTTTTTGGCTGGGTTCAATAAGAAACCGAAAGTGGTACTTAACAGAG
CCAATATCGTAAGCACATTTTTATAAAGCcctttgaagtcaaaaagattC
TATACACTAATGAAAGAATAAGAGAATAAGTCTAAATGAATAAATCAGAG
AAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNccccccccccccccgggatcgTTGCAAAGCAAAACACTCTCTAA
CCTTAATAATAATGGCATTTAGAATTTTTCGGTTCTCTAATGTAGTATGA
CGGCATTTGCAATTCTAACAGCCAACCCAAAGCTGCAATTCAGACTAATA
AATAAGCTGTCCTGTTTTGTTTTCAGAATATCTATTACACACTGGTGATG
TTAGATCCCGATGCACCGAGTAGAAAAGATCCTTCACAAAGAAGTTGGCT
TCATTGGCTCATTGTAAACATTCATGTAAGCAAAGTATCGAATGgaaata
attttgaattaaattaaattaaaatagctggaaaaaaattcaagaaaagt
tTTGGTAAATTTGGTAAACTTCTTATAATCAAGGCTACTCAGAACTAAAC
TTGTTATCAATGAATGGTCTAgtaattcatgatatacaccattgcaatgt
cttctgatattacatcatggacccaatagctgattggttgtaagtgacgt
aaaatcagtcaatacgtcacactttcaaccaatcagctattgggttcgtg
gaagacattgcaattctgcaatggtgcatatcatgaataccagATTCCAA
ACCTTTTTTCTAGAATGCAGACATTTCGACTGGATTTGAAGTCGTAGGTA
AAAACATTTTACTCCATTAAATCTTGGTTATCAAAAGTAAAAGGCAAACG
GAATAACGAGGGATAACGGATAAATTTCCTGATAATTTCCAAGTTGTTAA
AAAGAGTATGGCttgtagtgtggtcgtgttacaaaaatacagactgtttg
taggaaaaaataagatttagctgaaactttctccagaccttctctatagg
atgcttatatctcaggaaaaatcccctaaaatcccactggtggaacatct
cttttttgggcaatttcttttttccccaggcaaaatcctaagagcgaaat
tttttgaaaatttcaaacttatttccagacgaaagctctcgaaaaactat
atagaagacttttaaacggttatagccgATTTCCTTACATAACTCAAGAC
CCCACTATAATGATTTTGGAGGTATTCGAATCTCGTCAGAACATTCAAAT
GAAAACGCAAAACTTCCGTGGTCGAGTGAGGTGCAAGTTATCACATGTGG
ATGAAATATTTACttattatttatcttttttcagAATACAACCCACCTAC
ACCACCCAAAAACTCCGGTTTCCATCGCTACGTATTCCTTCTAATTGTTC
agccaaagaaagaaaaagaatatcttCCAATCGTCAAGCGTGGAAAGTTC
AACATCAATAAATACGCAACTAATCATAGCTTGACAAATCTTGCGGGACT
AAcatattttcaaactaaaaaagaaGATAAACTCCAACTTCCAGCTAATG
CAGATTGAGTGACAGAATAACAAATATGATATTTTAGGAAGTATGTTAAA
GACTTTCATTTGCAGTCGAAGAATTATTTATaaagattatatttttatac
ataactatggtggcccataagtgccaagtaattttttcttgaaaaactca
aaaaaaaatttttttatacatgaaaataactttcattCTACAATTTAAAT
TGGCTctcatttcaaaatcaatttaaaagtaatttcgttttcaaaatggc
tttaaaaacaacttaaaataCGACCCAGCAAGGCCACACAAatgatttaa
attttgttttaattNNNNNNNNNNNNNNacactttcaaccaatcagctat
tgggttcgtggaagacattgcaattctgcaatggtgcatatcatgaatac
cagATTCCAAACCTTTTTTCTAGAATGCAGACATTTCGACTGGATTTGAA
GTCGTAGGTAAAAACATTTTACTCCATTAAATCTTGGTTATCAAAAGTAA
AAGGCAAACGGAATAACGAGGGATAACGGATAAATTTCCTGATAATTTCC
AAGTTGTTAAAAAGAGTATGGCttgtagtgtggtcgtgttacaaaaatac
agactgtttgtaggaaaaaataagatttagctgaaactttctccagacct
tctctataggatgcttatatctcaggaaaaatcccctaaaatcccactgg
tggaacatctcttttttgggcaatttcttttttccccaggcaaaatccta
agagcgaaattttttgaaaatttcaaacttatttccagacgaaagctctc
gaaaaactatatagaagacttttaaacggttatagccgATTTCCTTACAT
AACTCAAGACCCCACTATAATGATTTTGGAGGTATTCGAATCTCGTCAGA
ACATTCAAATGAAAACGCAAAACTTCCGTGGTCGAGTGAGGTGCAAGTTA
TCACATGTGGATGAAATATTTACttattatttatcttttttcagAATACA
ACCCACCTACACCACCCAAAAACTCCGGTTTCCATCGCTACGTATTCCTT
CTAATTGTTCagccaaagaaagaaaaagaatatcttCCAATCGTCAAGCG
TGGAAAGTTCAACATCAATAAATACGCAACTAATCATAGCTTGACAAATC
TTGCGGGACTAAcatattttcaaactaaaaaagaaGATAAACTCCAACTT
CCAGCTAATGCAGATTGAGTGACAGAATAACAAATATGATATTTTAGGAA
GTATGTTAAAGACTTTCATTTGCAGTCGAAGAATTATTTATaaagattat
atttttatacataactatggtggcccataagtgccaagtaattttttatt
gaaaaactcaaaaaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043266XLOC_043266Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069420-exon-scaffold_5-1491911889:209619..210076TCONS_00069420-exon-scaffold_5-1491911889:209619..210076Clytia hemisphaericaexon
TCONS_00069420-exon-scaffold_5-1510915933:209619..210076TCONS_00069420-exon-scaffold_5-1510915933:209619..210076Clytia hemisphaericaexon
TCONS_00069420-exon-scaffold_5-1575043694:209619..210076TCONS_00069420-exon-scaffold_5-1575043694:209619..210076Clytia hemisphaericaexon
TCONS_00069420-exon-scaffold_5-1491911889:211045..211143TCONS_00069420-exon-scaffold_5-1491911889:211045..211143Clytia hemisphaericaexon
TCONS_00069420-exon-scaffold_5-1510915933:211045..211143TCONS_00069420-exon-scaffold_5-1510915933:211045..211143Clytia hemisphaericaexon
TCONS_00069420-exon-scaffold_5-1575043694:211045..211143TCONS_00069420-exon-scaffold_5-1575043694:211045..211143Clytia hemisphaericaexon
TCONS_00069420-exon-scaffold_5-1491911889:211482..211515TCONS_00069420-exon-scaffold_5-1491911889:211482..211515Clytia hemisphaericaexon
TCONS_00069420-exon-scaffold_5-1510915933:211482..211515TCONS_00069420-exon-scaffold_5-1510915933:211482..211515Clytia hemisphaericaexon
TCONS_00069420-exon-scaffold_5-1575043694:211482..211515TCONS_00069420-exon-scaffold_5-1575043694:211482..211515Clytia hemisphaericaexon
TCONS_00069420-exon-scaffold_5-1491911889:213263..213636TCONS_00069420-exon-scaffold_5-1491911889:213263..213636Clytia hemisphaericaexon
TCONS_00069420-exon-scaffold_5-1510915933:213263..213636TCONS_00069420-exon-scaffold_5-1510915933:213263..213636Clytia hemisphaericaexon
TCONS_00069420-exon-scaffold_5-1575043694:213263..213636TCONS_00069420-exon-scaffold_5-1575043694:213263..213636Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:209619..213636 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	1.18244	0.302657	45.6984	43.1469	21.9071	19.2895	36.1854	27.5943	62.8999	39.0503	3.1294	3.16975	3.62248	6.32268	3.73879	4.62807	5.81811	3.74225	8.36227	7.98923	4.49558	5.10824	2.80302	4.41367	0	0	0.658357	1.73479
Blast
[Close]
BLAST of TCONS_00069420 vs. Swiss-Prot (Human)
Match: PEBP1 (Phosphatidylethanolamine-binding protein 1 OS=Homo sapiens GN=PEBP1 PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 1.439e-20
Identity = 53/151 (35.10%), Postives = 78/151 (51.66%), Query Frame = 3 
Query:  357 MEVTFAGVTV-VCGENYFLAGFNKKP-KVVLNRANINIYYTLVMLDPDAPSRKDPSQRSWLHWLIVNIHNADISTGFEVVEYNPPTPPKNSGFHRYVFLLIVQPKKEKEYLPIVK------RGKFNINKYATNHSLTNLAGLTYFQTKKED 785
            + VT+AG  V   G+         +P  +  +  +    YTLV+ DPDAPSRKDP  R W H+L+VN+   DIS+G  + +Y    PPK +G HRYV+L+  Q +  K   PI+       RGKF +  +   + L      T +Q + +D
Sbjct:   25 LHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDD 175
The following BLAST results are available for this feature:
BLAST of TCONS_00069420 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PEBP11.439e-2035.10Phosphatidylethanolamine-binding protein 1 OS=Homo... [more]
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