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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069273 ID=TCONS_00069273|Name=TCONS_00069273|organism=Clytia hemisphaerica|type=transcript|length=2914bp
TTCAGGGGTATACCGGGATGTGAATCGTCGGCCGAAGCTTTCGCCATGGA
AGAAATTGATGGAAAATCGTTTCTCTTACTCAGGGTGGACCACATGGTAC
AAACAATGAACTTGAAACTTGGTCCTGCCCTCAAAATTGCTTCTTGTTTG
AGGGATATTAAAATGGAGTATGGTATTCAAACAAGGACGAAATATTTGAG
CTCCCCTTCATAGCATTTGTTTGAATAGGTGCATTTCTTACTGGATGGTG
GTGAAAAAGCAAGTCTTTCATGGAGAGAGAGATAGCTTTTCTTCAGGTTA
TTAAGTTTTCGTGCTTTAGTTTTGGTAGCAATAGGGCTGATCCCTGCAGG
CAATAATTATCAGGTGATATGCTGTCTGTTTCAATGTTGAAAATTGATTC
CATCAAATCGGGTGACGTTTTACGTATGCTTATTGGAATTCATCTCATTG
GGAGTTAAATAAACCCTGTTCAATCGATTCCTTTCCATCAGGTTAGACCA
CAGTTGCTTTGATTTGCACAACTTTTGCTTTGCTTTGGTGCGAAATCCAG
ATCAGAATCGATGGCTTGTTTTGCTATCGATACGTTTTGGGATCGCGGGA
ACAATACAATATTTCTTCATATTGAAGAACAGTCTCACGAAACAAAGGGA
TTCGAATTATGAGAAAAGTGAACTGTTTTCAAACGAAACtcaatttaaat
caaaattcaatcttCTGGAGATTACTCTGCGCTAATTCAATTACGATATT
CAGTTCATAAAAGAGAGAAGATTTCTTTacgaaaattataaacaaatgat
attttctttttctactcACTCTCTgaataacaaagaaaaaaacaaaagag
aaTTTAACAATGCGAACAATGCCCCTGTTTTGAAACACCTCTTCAGCATA
ATTCGTCCAATAATTAATCTGCTAAACCTAATTAGAGCGTCTTCTAAATT
ATCACTTATCTGTCTGAGGGGGGCTTCTTTAATACGAAGCAGCTGTCTTT
TGAAGTTGGAGATTTATTTGTCAGAAAATGTTTacaaggtttaaaaaaaa
actggaaattGCTCTGCTGGATAAAtttggatttatttttgaaaaataat
ctttGTATACATAGATCGAGATTTTGATTTGCATCGGATATCTATCAAAA
TCagtttcttatgagaactgtaTCTGTTGCGTAATGATTCGGATGTTAGT
GTTAAACAAAAGATTATAATCCGCAGCTCTGCTCgaaattccttttgttt
ttttttctatttatcttCCCAAAAAGGTTAAACTAAATGAAATTTAGGTA
CTGAAATTCTTGCTCGATTGGCAATCGATTTGGTGACCCGGTCGTGTATC
AAGTTCTCGATGAACGTCGAATGTGATGCGTTTCGTATCGGTTCGAAATT
TATCCCTGCTTGCATTCATATTGCTCTTATCCTGGGAAGCATGGAAAGCT
GTCATTACTACCGAATTACGTCATCGCGCCATACGGAGAATCACGGAAGC
ATTCGAAGCATCAGCCAAATTCGATGAAAAGCTTTTGACAAATGAATACT
TAGTGACGGAAAACTCAGTGGACGTGGAGTATGCGGCCGTACAACGTTTA
CGTAAGAAGGTATTGAAAACGGGATGTCATCAACGCAAAGTAGAAGATAT
TTACCCCCTCAACACTGACTTTAACAAAGGAATCAATCCAAGTGCATTTC
GTAATATATTGGTCAGCGACAAACATCAACTTCTGTACTGCATTACACCC
AAAGTGGCTTGCACTAATTGGAAACGTGTCCTACTAGTACTGGAtggata
ttttacagacccgaataataTTACTGCTTCGTTAGCTCACGATTTCAATC
AAGGATATTTTCGACGTTTAAGCGATTATACACCTGACGAAATTAATTTA
CGTTTATCAACTTattacaaatttttatttgcaaGACATCCTTTTGAACG
ATTAACAGCAGCTTATAGGAATAAATTCATTTATCAAAATACACAGAACA
AATTTTTCAGCGTCATTTTTGGACAGTTTATAAGACGCAAATACCGTCAT
CATAATTCGACGACTACTAAGAAATCTTCAGTAACTTTTGCAGAGTTTGT
ACAGTACATTGTTGACTCGCCTCTGGAGGATAAAGAGTTCTGGAACGAGC
ATTGGGAACGAATAGAGAGATTATGTCTGCCTTGTTTAATACAATATGAC
TTTATTGGcaaatttgaaactttgaaACAAGACGCTGATTTTCTTTTACG
GACACTCGATGTAAATGACTTGGTCAAATTTCCGGACGGCTATAAAGGAC
ATGCTTCGAGTACACCATCTTTGATGAGaaatttatttgaatctttaccG
AAGAGGTTACTGGAGAAATTGTATGAATTGTATAAAATGGATTTCATGCT
GTTTGGCTATCAAAATGGTTTTGAATCCTAGACTAAAATATACATTGAAC
TGGTCCTTTTTTTGACGTCCATCGAAACAGGTTTAAGGCCGTGAAGGCTG
ATtagtaggctgctggcatcgtttttttacaaaattattcACCATTTGTG
ATTCCATCGAGGTGCAATTTTAAATTAAATCCCTAGCAATCCCAGTCAAA
CCAATGAATTGTAACCCTTCTTTCTATGTATATATGTatcttgttttaaa
attttcgcaaCCATAGGCGCTATCAGCCAAGCGTATTGTGCTTTCGATGT
TATAAAATAGCATATCATGCCGCCCATGAAATGTACTTCATTTTGTATAT
ACTTCTctgtatttttgttttgtacCTAAATTTCATGGTAAAAAGAGTCT
TCCACTAAAAACTTTTCTTAGCGCAAACCAATCTATTTTATGTGATACGC
TTTAGGATTTTGTTTATAAAGAGTGTTGTAAGTGTTTTTATACAGATgtc
aaatttcattaaaa Run BLAST on NCBI transcript from alignment at scaffold_496:643921..649482- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069273 ID=TCONS_00069273|Name=TCONS_00069273|organism=Clytia hemisphaerica|type=transcript|length=5562bp|location=Sequence derived from alignment at scaffold_496:643921..649482- (Clytia hemisphaerica)
TTCAGGGGTATACCGGGATGTGAATCGTCGGCCGAAGCTTTCGCCATGGA
AGAAATTGATGGAAAATCGTTTCTCTTACTCAGGGTGGACCACATGGTAC
AAACAATGAACTTGAAACTTGGTCCTGCCCTCAAAATTGCTTCTTGTTTG
AGGGATATTAAAATGGAGTATGGTATTCAAACAAGGACGAAATATTTGAG
CTCCCCTTCATAGCATTTGTTTGAATAGGTGCATTTCTTACTGGATGGTG
GTGAAAAAGCAAGTCTTTCATGGAGAGAGAGATAGCTTTTCTTCAGGTTA
TTAAGTTTTCGTGCTTTAGTTTTGGTAGCAATAGGGCTGATCCCTGCAGG
CAATAATTATCAGGTGATATGCTGTCTGTTTCAATGTTGAAAATTGATTC
CATCAAATCGGGTGACGTTTTACGTATGCTTATTGGAATTCATCTCATTG
GGAGTTAAATAAACCCTGTTCAATCGATTCCTTTCCATCAGGTTAGACCA
CAGTTGCTTTGATTTGCACAACTTTTGCTTTGCTTTGGTGCGAAATCCAG
ATCAGAATCGATGGCTTGTTTTGCTATCGATACGTTTTGGGATCGCGGGA
ACAATACAATATTTCTTCATATTGAAGAACAGTCTCACGAAACAAAGGGA
TTCGAATTATGAGAAAAGTGAACTGTTTTCAAACGAAACTCAATTTAAAT
CAAAATTCAATCTTCTGGAGATTACTCTGCGCTAATTCAATTACGATATT
CAGTTCATAAAAGAGAGAAGATTTCTTTACGAAAATTATAAACAAATGAT
ATTTTCTTTTTCTACTCACTCTCTGAATAACAAAGAAAAAAACAAAAGAG
AATTTAACAATGCGAACAATGCCCCTGTTTTGAAACACCTCTTCAGCATA
ATTCGTCCAATAATTAATCTGCTAAACCTAATTAGAGCGTCTTCTAAATT
ATCACTTATCTGTCTGAGGGGGGCTTCTTTAATACGAAGCAGCTGTCTTT
TGAAGTTGGAGATTTATTTGTCAGAAAATGTTTACAAGGTTTAAAAAAAA
ACTGGAAATTGCTCTGCTGGATAAATTTGGATTTATTTTTGAAAAATAAT
CTTTGTATACATAGATCGAGATTTTGATTTGCATCGGATATCTATCAAAA
TCAGTTTCTTATGAGAACTGTATCTGTTGCGTAATGATTCGGATGTTAGT
GTTAAACAAAAGATTATAATCCGCAGCTCTGCTCGAAATTCCTTTTGTTT
TTTTTTCTATTTATCTTCCCAAAAAGGTTAAACTAAATGAAATTTAGGTA
CTGAAATTCTTGCTCGATTGGCAATCGATTTGGTGACCCGGTCGTGTATC
AAGTTCTCGATGAACGTCGAATGTGATGCGTTTCGTATCGGTTCGAAATT
TATCCCTGCTTGCATTCATATTGCTCTTATCCTGGGAAGCATGGAAAGCT
GTCATTACTACCGAATTACGTCATCGCGCCATACGGAGAATCACGGAAGG
TTGGTAACGTGTCATTGAATTTTGTAGCTTTTTATGTGTTTTTATAGTAT
CATATCAATTTCTTTGAATATCATCGTGGCTGACTCTAGTCAGAAAATCT
GCCGTATACTATGTTGGCTTTCTGATTTTGAATGATGGTGCTACGATAGG
ACTCTACTTTTTCCCCCATCAGAATTATTAAAGGCAAAAAGTAGTTAAGC
TCCAGCTTAACTCTTCAATTCGGGGGGGAGGGGTTGATTTTTTTTATTTA
TCTAAAGTAAAATTTGAACTTGAACATAGCACATGTAAGTGATATAACTT
AAAGTTTGACTGCGAGTCAAACCAATACGAAGCCAGCAACGCATATTTAT
ACTTCACGGTTTATGTACCAGTTAATTGGGTCATTTTAGTCAGCTATTAA
AACAATCTTTTCGTTCCAGCATTCGAAGCATCAGCCAAATTCGATGAAAA
GCTTTTGACAAATGTAAGTGCATAAAGTTTTATAGTAATTTGACACATCA
TTAAATTTTCTAGATTTTCCTACTTTCTTTTGTGATTGAACTTAATAGGT
CAAGAGATTTTTCGATGGAAATCTATTTTGGCGTAAGGCTGAAAAGTTTT
TTAGAGTAGATTTCATCATGCAGATGGGTAGGAAAGTTAAATTTGATCAT
AACATGATATTTTAGGATGCGAAATTATAAACGTTTTTAATATCATGATA
TGAGTAAGTTAAACGCTCAAAACTTATTATTTTCCTTTCTCTCTCTGATA
AGGAATATTTAGTGACGGAAAACTCAGTGGACGTGGAGTATGCGGCCGTG
CAACGTTTACGTAAGAAGGTATTGAAAACGGGATGTCATCAACGCAAAGT
AGAAGATGTCTACCCCCTCAACACTGACTTCAACAAAGGAATCAATCCAA
GTGCATTTCGTAATATATTGGTAATGGAGAAATCTTATTGATTTTTTGTT
ATGTCTGTCTGTCTGTCTATCTATCCTAGCTAATTAAATTGCACACTGTT
TGATAAGATTATTGTACTTTGGATTAAGATCAAACATTATTCCTTTTTCT
CTTTTGTTCTATACTGTATTTACTTGATATTGTGATACCGAAATCACACC
CTGAAATACTTCTAGAAATTATTGTTTTGTCGTGGTTAGTCATTTGAACG
TAGACTTATTATTTAAGTAGGTTGAATTGGACTTACAGCTTGACTCCTAG
AATTGAACTCGTTGAGTATGTATACTCTCAAAAATGACAAAAAAATTGTA
ATGGCTTAGTTTAATGTAAATCCGAAAACTTAAATAATATCCTTCAAGTC
ATCCGTTGCTTTTATGAGTTTTGTGTTCATTTCATTACAGGTGAGCGACA
AACACCAACTTCTGTACTGCATTACACCCAAAGTGGCTTGCACTAATTGG
AAACGTGTTCTACTAGTACTGGATGGATATTTTACAGACCCGAATAATAT
TACTGCTTCGTTAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTAAAATTTGAACTTGAACATAGCACATGTA
AGTGATATAACTTAAAGTTTGACTGCGAGTCAAACCAATACGAAGCCAGC
AACGCATATTTATACTTCACGGTTTATGTACCAGTTAATTGGGTCATTTT
AGTCAGCTATTAAAACAATCTTTTCGTTCCAGCATTCGAAGCATCAACCA
AATTCGATGAAAAGCTTTTGACAAATGTAAGTGCATAAAGTTTTATAGTA
ATTTGACACATCATTAAATTTTCTAGATTTTCCTACTTTCTTTTGTGATT
GAACTTAATAGGTCAAGAGATTTTTCGATGGAAATCTATTTTGGCGTAAG
GCTGAAAAGTCTTTTAGAGTAGATTTCATCATGCAGATGGGTAGGAAAGC
TAAATTTGATCATAACATGATATTTTAGGATGCGAAATTTTAAACGTTTT
TAATATCATGATATGAATAAGTTAAACGCTCAAAACTTATTATTTTCCTT
CCTCTCTCTGACAAGGAATACTTAGTGACGGAAAACTCAGTGGACGTGGA
GTATGCGGCCGTACAACGTTTACGTAAGAAGGTATTGAAAACGGGATGTC
ATCAACGCAAAGTAGAAGATATTTACCCCCTCAACACTGACTTTAACAAA
GGAATCAATCCAAGTGCATTTCGTAATATATTGGTAATGGGAAATCTTAT
TGATTTCTTGTCTGTCTGTCTGTATGTCTGTATGGCTGTTTATCCTAGCT
AATTAAATCGCACACTGTTAAATAAGATTATTGTACTTTGGATTAAGATT
AAACATTATTCCTTTTTCTCTTTTGTTCTATACGATATTTACTTGATATT
GTGATACCGAAATCACACCCTGAGATACTTCTAGAAATTATTGTTTTGTT
GTGGTTAGTCATTTAAATGTAAACTTAATATTTAAGTAGGGTGAGCTGAA
CTTAGAGCTTGACTCCTAGAATTGAACTCGTTGAGTATGTATACTTTCAA
AAATGACAAAAAATTTGTAATGGCTTAGTTTAATGTAAATCTGAAAACTT
AGATAATACCCTTCAAGTCATCCGTTGCTTTTATGAGTTTTGTGTTCATT
TCATTACAGGTCAGCGACAAACATCAACTTCTGTACTGCATTACACCCAA
AGTGGCTTGCACTAATTGGAAACGTGTCCTACTAGTACTGGATGGATATT
TTACAGACCCGAATAATATTACTGCTTCGTTAGCTCACGATTTCAATCAA
GGATATTTTCGACGTTTAAGCGATTATACACCTGACGAAATTAATTTACG
TTTATCAACTTATTACAAATTTTTATTTGCAAGACATCCTTTTGAACGAT
TAACAGCAGCTTATAGGAATAAATTCATTTATCAAAATACACAGAACAAA
TTTTTCAGCGTCATTTTTGGACAGTTTATAAGACGCAAATACCGTCATCA
TAATTCGACGACTACTAAGAAATCTTCAGTAACTTTTGCAGAGTTTGTAC
AGTACATTGTTGACTCGCCTCTGGAGGATAAAGAGTTCTGGAACGAGCAT
TGGGAACGAATAGAGAGATTATGTCTGCCTTGTTTAATACAATATGACTT
TATTGGCAAATTTGAAACTTTGAAACAAGACGCTGATTTTCTTTTACGGA
CACTCGATGTAAATGACTTGGTCAAATTTCCGGACGGCTATAAAGGACAT
GCTTCGAGTACACCATCTTTGATGAGAAATTTATTTGAATCTTTACCGAA
GAGGTTACTGGAGAAATTGTATGAATTGTATAAAATGGATTTCATGCTGT
TTGGCTATCAAAATGGTTTTGAATCCTAGACTAAAATATACATTGAACTG
GTCCTTTTTTTGACGTCCATCGAAACAGGTTTAAGGCCGTGAAGGCTGAT
TAGTAGGCTGCTGGCATCGTTTTTTTACAAAATTATTCACCATTTGTGAT
TCCATCGAGGTGCAATTTTAAATTAAATCCCTAGCAATCCCAGTCAAACC
AATGAATTGTAACCCTTCTTTCTATGTATATATGTATCTTGTTTTAAAAT
TTTCGCAACCATAGGCGCTATCAGCCAAGCGTATTGTGCTTTCGATGTTA
TAAAATAGCATATCATGCCGCCCATGAAATGTACTTCATTTTGTATATAC
TTCTCTGTATTTTTGTTTTGTACCTAAATTTCATGGTAAAAAGAGTCTTC
CACTAAAAACTTTTCTTAGCGCAAACCAATCTATTTTATGTGATACGCTT
TAGGATTTTGTTTATAAAGAGTGTTGTAAGTGTTTTTATACAGATGTCAA
ATTTCATTAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069273-exon-scaffold_496-1575043694:647984..649482 | TCONS_00069273-exon-scaffold_496-1575043694:647984..649482 | Clytia hemisphaerica | exon |
| TCONS_00069273-exon-scaffold_496-1575043694:647520..647563 | TCONS_00069273-exon-scaffold_496-1575043694:647520..647563 | Clytia hemisphaerica | exon |
| TCONS_00069273-exon-scaffold_496-1575043694:645550..645717 | TCONS_00069273-exon-scaffold_496-1575043694:645550..645717 | Clytia hemisphaerica | exon |
| TCONS_00069273-exon-scaffold_496-1575043694:643921..645123 | TCONS_00069273-exon-scaffold_496-1575043694:643921..645123 | Clytia hemisphaerica | exon |
| TCONS_00069273-exon-scaffold_496-1510915933:647984..649482 | TCONS_00069273-exon-scaffold_496-1510915933:647984..649482 | Clytia hemisphaerica | exon |
| TCONS_00069273-exon-scaffold_496-1510915933:647520..647563 | TCONS_00069273-exon-scaffold_496-1510915933:647520..647563 | Clytia hemisphaerica | exon |
| TCONS_00069273-exon-scaffold_496-1510915933:645550..645717 | TCONS_00069273-exon-scaffold_496-1510915933:645550..645717 | Clytia hemisphaerica | exon |
| TCONS_00069273-exon-scaffold_496-1510915933:643921..645123 | TCONS_00069273-exon-scaffold_496-1510915933:643921..645123 | Clytia hemisphaerica | exon |
| TCONS_00069273-exon-scaffold_496-1491911889:647984..649482 | TCONS_00069273-exon-scaffold_496-1491911889:647984..649482 | Clytia hemisphaerica | exon |
| TCONS_00069273-exon-scaffold_496-1491911889:647520..647563 | TCONS_00069273-exon-scaffold_496-1491911889:647520..647563 | Clytia hemisphaerica | exon |
| TCONS_00069273-exon-scaffold_496-1491911889:645550..645717 | TCONS_00069273-exon-scaffold_496-1491911889:645550..645717 | Clytia hemisphaerica | exon |
| TCONS_00069273-exon-scaffold_496-1491911889:643921..645123 | TCONS_00069273-exon-scaffold_496-1491911889:643921..645123 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_496 | supercontig | scaffold_496:643921..649482 - |
Blast
BLAST of TCONS_00069273 vs. Swiss-Prot (Human)
Match: CHSTD (Carbohydrate sulfotransferase 13 OS=Homo sapiens GN=CHST13 PE=1 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 7.774e-51 Identity = 117/282 (41.49%), Postives = 152/282 (53.90%), Query Frame = 2
Query: 1583 AAVQRLRKKVLKTGC--HQRKVEDIYPLNTDFNKGINPSAFRNILVSDKHQLLYCITPKVACTNWKRVLLVLDGYF-TDPNNITASLAHDFNQGYFRRLSDYTPDEINLRLSTYYKFLFARHPFERLTAAYRNKFIYQNTQNKFFSVIFGQFI--RRKYRHHNSTTTKKSSVTFAEFVQYIVDSPLEDKEFWNEHWERIERLCLPCLIQYDFIGKFETLKQDADFLLRTLDVNDLV-KFPDGYKGHASSTPSLMRNLFESLPKRXXXXXXXXXXMDFMLFGY 2410
A V R R+ +L + C H R+ + + P R++LV D H LLYC PKVACTNWKRVLL L G DP I+A AH G L+D++P EIN RL Y FLF R PFERL +AYRNK + F +G I R + R + V FAEF+ Y++D +E +NEHWER LC PC ++YD +GKFETL +DA F+L +DL P +G A+S L LF + +L++LYKMDF+LF Y
Sbjct: 67 AKVHRQRRDLLNSACSRHSRR-----------QRLLQPEDLRHVLVDDAHGLLYCYVPKVACTNWKRVLLALSGQARGDPRAISAQEAH--APGRLPSLADFSPAEINRRLRAYLAFLFVREPFERLASAYRNKLA--RPYSAAFQRRYGARIVQRLRPRALPDARARGHDVRFAEFLAYLLDPRTRREEPFNEHWERAHALCHPCRLRYDVVGKFETLAEDAAFVLGLAGASDLSFPGPPRPRGAAASR-DLAARLFRDISPFYQRRLFDLYKMDFLLFNY 332
The following BLAST results are available for this feature:
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