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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069271 ID=TCONS_00069271|Name=TCONS_00069271|organism=Clytia hemisphaerica|type=transcript|length=1323bp
CAACGTTTACGTAAGAAGGTATTGAAAACGGGATGTCATCAACGCAAAGT
AGAAGATGTCTACCCCCTCAACACTGACTTCAACAAAGGAATCAATCCAA
GTGCATTTCGTAATATATTGGTCAGCGACAAACATCAACTTCTGTACTGC
ATTACACCCAAAGTGGCTTGCACTAATTGGAAACGTGTCCTACTAGTACT
GGAtggatattttacagacccgaataataTTACTGCTTCGTTAGCTCACG
ATTTCAATCAAGGATATTTTCGACGTTTAAGCGATTATACACCTGACGAA
ATTAATTTACGTTTATCAACTTattacaaatttttatttgcaaGACATCC
TTTTGAACGATTAACAGCAGCTTATAGGAATAAATTCATTTATCAAAATA
CACAGAACAAATTTTTCAGCGTCATTTTTGGACAGTTTATAAGACGCAAA
TACCGTCATCATAATTCGACGACTACTAAGAAATCTTCAGTAACTTTTGC
AGAGTTTGTACAGTACATTGTTGACTCGCCTCTGGAGGATAAAGAGTTCT
GGAACGAGCATTGGGAACGAATAGAGAGATTATGTCTGCCTTGTTTAATA
CAATATGACTTTATTGGcaaatttgaaactttgaaACAAGACGCTGATTT
TCTTTTACGGACACTCGATGTAAATGACTTGGTCAAATTTCCGGACGGCT
ATAAAGGACATGCTTCGAGTACACCATCTTTGATGAGaaatttatttgaa
tctttaccGAAGAGGTTACTGGAGAAATTGTATGAATTGTATAAAATGGA
TTTCATGCTGTTTGGCTATCAAAATGGTTTTGAATCCTAGACTAAAATAT
ACATTGAACTGGTCCTTTTTTTGACGTCCATCGAAACAGGTTTAAGGCCG
TGAAGGCTGATtagtaggctgctggcatcgtttttttacaaaattattcA
CCATTTGTGATTCCATCGAGGTGCAATTTTAAATTAAATCCCTAGCAATC
CCAGTCAAACCAATGAATTGTAACCCTTCTTTCTATGTATATATGTatct
tgttttaaaattttcgcaaCCATAGGCGCTATCAGCCAAGCGTATTGTGC
TTTCGATGTTATAAAATAGCATATCATGCCGCCCATGAAATGTACTTCAT
TTTGTATATACTTCTctgtatttttgttttgtacCTAAATTTCATGGTAA
AAAGAGTCTTCCACTAAAAACTTTTCTTAGCGCAAACCAATCTATTTTAT
GTGATACGCTTTAGGATTTTGTTTATAAAGAGTGTTGTAAGTGTTTTTAT
ACAGATgtcaaatttcattaaaa Run BLAST on NCBI transcript from alignment at scaffold_496:643921..647182- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069271 ID=TCONS_00069271|Name=TCONS_00069271|organism=Clytia hemisphaerica|type=transcript|length=3262bp|location=Sequence derived from alignment at scaffold_496:643921..647182- (Clytia hemisphaerica)
CAACGTTTACGTAAGAAGGTATTGAAAACGGGATGTCATCAACGCAAAGT
AGAAGATGTCTACCCCCTCAACACTGACTTCAACAAAGGAATCAATCCAA
GTGCATTTCGTAATATATTGGTAATGGAGAAATCTTATTGATTTTTTGTT
ATGTCTGTCTGTCTGTCTATCTATCCTAGCTAATTAAATTGCACACTGTT
TGATAAGATTATTGTACTTTGGATTAAGATCAAACATTATTCCTTTTTCT
CTTTTGTTCTATACTGTATTTACTTGATATTGTGATACCGAAATCACACC
CTGAAATACTTCTAGAAATTATTGTTTTGTCGTGGTTAGTCATTTGAACG
TAGACTTATTATTTAAGTAGGTTGAATTGGACTTACAGCTTGACTCCTAG
AATTGAACTCGTTGAGTATGTATACTCTCAAAAATGACAAAAAAATTGTA
ATGGCTTAGTTTAATGTAAATCCGAAAACTTAAATAATATCCTTCAAGTC
ATCCGTTGCTTTTATGAGTTTTGTGTTCATTTCATTACAGGTGAGCGACA
AACACCAACTTCTGTACTGCATTACACCCAAAGTGGCTTGCACTAATTGG
AAACGTGTTCTACTAGTACTGGATGGATATTTTACAGACCCGAATAATAT
TACTGCTTCGTTAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTAAAATTTGAACTTGAACATAGCACATGTA
AGTGATATAACTTAAAGTTTGACTGCGAGTCAAACCAATACGAAGCCAGC
AACGCATATTTATACTTCACGGTTTATGTACCAGTTAATTGGGTCATTTT
AGTCAGCTATTAAAACAATCTTTTCGTTCCAGCATTCGAAGCATCAACCA
AATTCGATGAAAAGCTTTTGACAAATGTAAGTGCATAAAGTTTTATAGTA
ATTTGACACATCATTAAATTTTCTAGATTTTCCTACTTTCTTTTGTGATT
GAACTTAATAGGTCAAGAGATTTTTCGATGGAAATCTATTTTGGCGTAAG
GCTGAAAAGTCTTTTAGAGTAGATTTCATCATGCAGATGGGTAGGAAAGC
TAAATTTGATCATAACATGATATTTTAGGATGCGAAATTTTAAACGTTTT
TAATATCATGATATGAATAAGTTAAACGCTCAAAACTTATTATTTTCCTT
CCTCTCTCTGACAAGGAATACTTAGTGACGGAAAACTCAGTGGACGTGGA
GTATGCGGCCGTACAACGTTTACGTAAGAAGGTATTGAAAACGGGATGTC
ATCAACGCAAAGTAGAAGATATTTACCCCCTCAACACTGACTTTAACAAA
GGAATCAATCCAAGTGCATTTCGTAATATATTGGTAATGGGAAATCTTAT
TGATTTCTTGTCTGTCTGTCTGTATGTCTGTATGGCTGTTTATCCTAGCT
AATTAAATCGCACACTGTTAAATAAGATTATTGTACTTTGGATTAAGATT
AAACATTATTCCTTTTTCTCTTTTGTTCTATACGATATTTACTTGATATT
GTGATACCGAAATCACACCCTGAGATACTTCTAGAAATTATTGTTTTGTT
GTGGTTAGTCATTTAAATGTAAACTTAATATTTAAGTAGGGTGAGCTGAA
CTTAGAGCTTGACTCCTAGAATTGAACTCGTTGAGTATGTATACTTTCAA
AAATGACAAAAAATTTGTAATGGCTTAGTTTAATGTAAATCTGAAAACTT
AGATAATACCCTTCAAGTCATCCGTTGCTTTTATGAGTTTTGTGTTCATT
TCATTACAGGTCAGCGACAAACATCAACTTCTGTACTGCATTACACCCAA
AGTGGCTTGCACTAATTGGAAACGTGTCCTACTAGTACTGGATGGATATT
TTACAGACCCGAATAATATTACTGCTTCGTTAGCTCACGATTTCAATCAA
GGATATTTTCGACGTTTAAGCGATTATACACCTGACGAAATTAATTTACG
TTTATCAACTTATTACAAATTTTTATTTGCAAGACATCCTTTTGAACGAT
TAACAGCAGCTTATAGGAATAAATTCATTTATCAAAATACACAGAACAAA
TTTTTCAGCGTCATTTTTGGACAGTTTATAAGACGCAAATACCGTCATCA
TAATTCGACGACTACTAAGAAATCTTCAGTAACTTTTGCAGAGTTTGTAC
AGTACATTGTTGACTCGCCTCTGGAGGATAAAGAGTTCTGGAACGAGCAT
TGGGAACGAATAGAGAGATTATGTCTGCCTTGTTTAATACAATATGACTT
TATTGGCAAATTTGAAACTTTGAAACAAGACGCTGATTTTCTTTTACGGA
CACTCGATGTAAATGACTTGGTCAAATTTCCGGACGGCTATAAAGGACAT
GCTTCGAGTACACCATCTTTGATGAGAAATTTATTTGAATCTTTACCGAA
GAGGTTACTGGAGAAATTGTATGAATTGTATAAAATGGATTTCATGCTGT
TTGGCTATCAAAATGGTTTTGAATCCTAGACTAAAATATACATTGAACTG
GTCCTTTTTTTGACGTCCATCGAAACAGGTTTAAGGCCGTGAAGGCTGAT
TAGTAGGCTGCTGGCATCGTTTTTTTACAAAATTATTCACCATTTGTGAT
TCCATCGAGGTGCAATTTTAAATTAAATCCCTAGCAATCCCAGTCAAACC
AATGAATTGTAACCCTTCTTTCTATGTATATATGTATCTTGTTTTAAAAT
TTTCGCAACCATAGGCGCTATCAGCCAAGCGTATTGTGCTTTCGATGTTA
TAAAATAGCATATCATGCCGCCCATGAAATGTACTTCATTTTGTATATAC
TTCTCTGTATTTTTGTTTTGTACCTAAATTTCATGGTAAAAAGAGTCTTC
CACTAAAAACTTTTCTTAGCGCAAACCAATCTATTTTATGTGATACGCTT
TAGGATTTTGTTTATAAAGAGTGTTGTAAGTGTTTTTATACAGATGTCAA
ATTTCATTAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069271-exon-scaffold_496-1575043694:647063..647182 | TCONS_00069271-exon-scaffold_496-1575043694:647063..647182 | Clytia hemisphaerica | exon |
| TCONS_00069271-exon-scaffold_496-1575043694:643921..645123 | TCONS_00069271-exon-scaffold_496-1575043694:643921..645123 | Clytia hemisphaerica | exon |
| TCONS_00069271-exon-scaffold_496-1510915933:647063..647182 | TCONS_00069271-exon-scaffold_496-1510915933:647063..647182 | Clytia hemisphaerica | exon |
| TCONS_00069271-exon-scaffold_496-1510915933:643921..645123 | TCONS_00069271-exon-scaffold_496-1510915933:643921..645123 | Clytia hemisphaerica | exon |
| TCONS_00069271-exon-scaffold_496-1491911889:647063..647182 | TCONS_00069271-exon-scaffold_496-1491911889:647063..647182 | Clytia hemisphaerica | exon |
| TCONS_00069271-exon-scaffold_496-1491911889:643921..645123 | TCONS_00069271-exon-scaffold_496-1491911889:643921..645123 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_496 | supercontig | scaffold_496:643921..647182 - |
Blast
BLAST of TCONS_00069271 vs. Swiss-Prot (Human)
Match: CHSTD (Carbohydrate sulfotransferase 13 OS=Homo sapiens GN=CHST13 PE=1 SV=1) HSP 1 Score: 181.03 bits (458), Expect = 5.681e-52 Identity = 115/279 (41.22%), Postives = 150/279 (53.76%), Query Frame = 1
Query: 1 QRLRKKVLKTGC--HQRKVEDVYPLNTDFNKGINPSAFRNILVSDKHQLLYCITPKVACTNWKRVLLVLDGYF-TDPNNITASLAHDFNQGYFRRLSDYTPDEINLRLSTYYKFLFARHPFERLTAAYRNKFIYQNTQNKFFSVIFGQFI--RRKYRHHNSTTTKKSSVTFAEFVQYIVDSPLEDKEFWNEHWERIERLCLPCLIQYDFIGKFETLKQDADFLLRTLDVNDLV-KFPDGYKGHASSTPSLMRNLFESLPKRXXXXXXXXXXMDFMLFGY 819
R R+ +L + C H R+ + + P R++LV D H LLYC PKVACTNWKRVLL L G DP I+A AH G L+D++P EIN RL Y FLF R PFERL +AYRNK + F +G I R + R + V FAEF+ Y++D +E +NEHWER LC PC ++YD +GKFETL +DA F+L +DL P +G A+S L LF + +L++LYKMDF+LF Y
Sbjct: 70 HRQRRDLLNSACSRHSRR-----------QRLLQPEDLRHVLVDDAHGLLYCYVPKVACTNWKRVLLALSGQARGDPRAISAQEAH--APGRLPSLADFSPAEINRRLRAYLAFLFVREPFERLASAYRNKLA--RPYSAAFQRRYGARIVQRLRPRALPDARARGHDVRFAEFLAYLLDPRTRREEPFNEHWERAHALCHPCRLRYDVVGKFETLAEDAAFVLGLAGASDLSFPGPPRPRGAAASR-DLAARLFRDISPFYQRRLFDLYKMDFLLFNY 332
The following BLAST results are available for this feature:
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