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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069189 ID=TCONS_00069189|Name=TCONS_00069189|organism=Clytia hemisphaerica|type=transcript|length=1684bp
AAAATGAGGATTTTCTGTCGCGTATACTATCGGGGCTGAAGTAACTTAAT
AGGTTTTAATGCAAAGATGCTTGCCAATTTCACTTATATTTTGAATATGA
AATCTTTTCTGATAATTCTAAAAAATGGATACCAAAGACGAAATAACCAA
CGGGAACTTATACAACGAAATATCTGAATCAATCACTAAAGAACAAATTC
ATTTCGTCCGTCTTGAAACTGAAGACATCAACAGTGTATCAAGAGGAGTA
TTACTCGATGCTGATTATTTTTTAGAGAATGCTAAAGAAGGTTTTGGTTT
TCCTCTTGGTCTTATTGGATGTATCGATTTTGATGGTAAACATGTCAGCA
ACAAAATCCTTGATTTAGGAACCATCTACGGTAATGGAGCCTTGTATCCT
GATTTATCCACATTCAAGAAGCTTCCCTGGAGAACCAATGTAGCATCTGC
CATATGTGATCTAAGCACAACCTTTGGAGATTTGAATACATCGAACTTCC
ACACAAGATCAATCTGTAAGCAGCAATTCAGGAAATTGAACCAATTAGGA
TTTGACTTAAAATCGGCATCAGAATATGAATACTATGTTGTTAACAAAGA
AACATTAAAACCTCTAGATGAAACAGATAATTTTGTATCTACATTGTTTA
ATGAGGAGAAATTTGGAATCGCAAGTCAAATTATGTATTCTTTGAAGAAG
ATTGGAGTCTTTCCTGAAAAGTTTCACATGGAATGTGCGCCTTCAATGTT
TGAGATTACCTTTAAACCAAGTTTTGGAATCAAAGGCCCTGATAATGCCA
TTCGATACCGCTCTACTGTCAAAGAGGTTTGTAGAAAAGAGGGAGTCGAA
GCTCTTTTTATGACTACACCTTTCAAAGATGAATATAAATCGACTTCGAA
TTTCAATCACTCTTTATGGAGTCTCACTGAGAAGACAAACGTATTTTACG
ATGCAGCCAATTCACACAAGCTTTctgaaaaaggtcaaaattggTTGGCT
GGATTGAAAGCACATTCAAAAGCATTGTTATGTTTAGCGATGCCGACCTA
CAATTGTTATCATCATTTTCAAGAAGAATTCAAACCAATGATGGGGATGA
ATACTGCATGGGGGTATGATAATCGTACAGCAGGCTACCGTGTCAAAGTC
ATCAACGAAAAATCCACCCTCATTGAGCATCGTCAACCGACATCTGCAGT
CAATCCATACTTATACACGGCAGGGTTACTTATTGCTGGTATGGACGGAT
TGAAAAGAGGCCTTCAGCTCACAGATCCTCCTCATGATGGTATAGTCGAT
AACGAACCTGAATGTAGCCCTTATTTTGATATTCCAAAAACTTTGGATGA
AGCATTGCGTTGTTTTCAGGAAGATGAATTGTTTGTCAAGGAGTTTGGGG
AAGAGTTTATTGAAGTGTACGTCACTTTGAAGAAAAATGAGATTCAAAGA
GTtgaagaaatgaagaaattgaGTAACGGTGATGAGAAACTTTTGTGGAA
ATTATATACAAAATATTATCAAACTTtgtaagaatttctttttaggcttt
cctAAAAAAATGGGGAAAGCGGAAATATTAATTAGTTATTGTGGCTGTGA
AAAGGTTTTATTAATGACTggtcgaaatattaagaacttaAGTAGAaaac
tagaaatccaaacagaaaatagacaacgaAAAAT Run BLAST on NCBI protein sequence of TCONS_00069189-protein >TCONS_00069189-protein ID=TCONS_00069189-protein|Name=TCONS_00069189-protein|organism=Clytia hemisphaerica|type=polypeptide|length=468bp
MDTKDEITNGNLYNEISESITKEQIHFVRLETEDINSVSRGVLLDADYFL
ENAKEGFGFPLGLIGCIDFDGKHVSNKILDLGTIYGNGALYPDLSTFKKL
PWRTNVASAICDLSTTFGDLNTSNFHTRSICKQQFRKLNQLGFDLKSASE
YEYYVVNKETLKPLDETDNFVSTLFNEEKFGIASQIMYSLKKIGVFPEKF
HMECAPSMFEITFKPSFGIKGPDNAIRYRSTVKEVCRKEGVEALFMTTPF
KDEYKSTSNFNHSLWSLTEKTNVFYDAANSHKLSEKGQNWLAGLKAHSKA
LLCLAMPTYNCYHHFQEEFKPMMGMNTAWGYDNRTAGYRVKVINEKSTLI
EHRQPTSAVNPYLYTAGLLIAGMDGLKRGLQLTDPPHDGIVDNEPECSPY
FDIPKTLDEALRCFQEDELFVKEFGEEFIEVYVTLKKNEIQRVEEMKKLS
NGDEKLLWKLYTKYYQTL Run BLAST on NCBI transcript from alignment at scaffold_496:341290..343273+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069189 ID=TCONS_00069189|Name=TCONS_00069189|organism=Clytia hemisphaerica|type=transcript|length=1984bp|location=Sequence derived from alignment at scaffold_496:341290..343273+ (Clytia hemisphaerica)
AAAATGAGGATTTTCTGTCGCGTATACTATCGGGGCTGAAGTAACTTAAT
AGGTTTTAATGCAAAGATGCTTGCCAATTTCACTTATATTTTGAATATGA
AATCTTTTCTGTGAGTAATTTTCTAGATATTTTATATGGGTCATCTATAT
CCAGATATCATTTAAATTCTGGCTTAATTAGCAGGTCAACATCCTACATT
GGTATTGGTATCCTAGTTTGCAAGAGTTTCTGTTCTGACGTCAGTCACTT
GCTGaacaatttttatattatagTATTATCATCGACGGTTTTATCCACAT
TCGTATTTTTACTGACAGCTAACTTGAAATGGACTTTCTAGTATACTTTT
TCCCGGTTACCCCGCACAAGAGCTCTAATGTTCACATATCTATCTCATCT
TCATAAACAGGATAATTCTAAAAAATGGATACCAAAGACGAAATAACCAA
CGGGAACTTATACAACGAAATATCTGAATCAATCACTAAAGAACAAATTC
ATTTCGTCCGTCTTGAAACTGAAGACATCAACAGTGTATCAAGAGGAGTA
TTACTCGATGCTGATTATTTTTTAGAGAATGCTAAAGAAGGTTTTGGTTT
TCCTCTTGGTCTTATTGGATGTATCGATTTTGATGGTAAACATGTCAGCA
ACAAAATCCTTGATTTAGGAACCATCTACGGTAATGGAGCCTTGTATCCT
GATTTATCCACATTCAAGAAGCTTCCCTGGAGAACCAATGTAGCATCTGC
CATATGTGATCTAAGCACAACCTTTGGAGATTTGAATACATCGAACTTCC
ACACAAGATCAATCTGTAAGCAGCAATTCAGGAAATTGAACCAATTAGGA
TTTGACTTAAAATCGGCATCAGAATATGAATACTATGTTGTTAACAAAGA
AACATTAAAACCTCTAGATGAAACAGATAATTTTGTATCTACATTGTTTA
ATGAGGAGAAATTTGGAATCGCAAGTCAAATTATGTATTCTTTGAAGAAG
ATTGGAGTCTTTCCTGAAAAGTTTCACATGGAATGTGCGCCTTCAATGTT
TGAGATTACCTTTAAACCAAGTTTTGGAATCAAAGGCCCTGATAATGCCA
TTCGATACCGCTCTACTGTCAAAGAGGTTTGTAGAAAAGAGGGAGTCGAA
GCTCTTTTTATGACTACACCTTTCAAAGATGAATATAAATCGACTTCGAA
TTTCAATCACTCTTTATGGAGTCTCACTGAGAAGACAAACGTATTTTACG
ATGCAGCCAATTCACACAAGCTTTctgaaaaaggtcaaaattggTTGGCT
GGATTGAAAGCACATTCAAAAGCATTGTTATGTTTAGCGATGCCGACCTA
CAATTGTTATCATCATTTTCAAGAAGAATTCAAACCAATGATGGGGATGA
ATACTGCATGGGGGTATGATAATCGTACAGCAGGCTACCGTGTCAAAGTC
ATCAACGAAAAATCCACCCTCATTGAGCATCGTCAACCGACATCTGCAGT
CAATCCATACTTATACACGGCAGGGTTACTTATTGCTGGTATGGACGGAT
TGAAAAGAGGCCTTCAGCTCACAGATCCTCCTCATGATGGTATAGTCGAT
AACGAACCTGAATGTAGCCCTTATTTTGATATTCCAAAAACTTTGGATGA
AGCATTGCGTTGTTTTCAGGAAGATGAATTGTTTGTCAAGGAGTTTGGGG
AAGAGTTTATTGAAGTGTACGTCACTTTGAAGAAAAATGAGATTCAAAGA
GTtgaagaaatgaagaaattgaGTAACGGTGATGAGAAACTTTTGTGGAA
ATTATATACAAAATATTATCAAACTTtgtaagaatttctttttaggcttt
cctAAAAAAATGGGGAAAGCGGAAATATTAATTAGTTATTGTGGCTGTGA
AAAGGTTTTATTAATGACTggtcgaaatattaagaacttaAGTAGAaaac
tagaaatccaaacagaaaatagacaacgaAAAAT Coding sequence (CDS) from alignment at scaffold_496:341290..343273+ >TCONS_00069189 ID=TCONS_00069189|Name=TCONS_00069189|organism=Clytia hemisphaerica|type=CDS|length=1407bp|location=Sequence derived from alignment at scaffold_496:341290..343273+ (Clytia hemisphaerica)
ATGGATACCAAAGACGAAATAACCAACGGGAACTTATACAACGAAATATC
TGAATCAATCACTAAAGAACAAATTCATTTCGTCCGTCTTGAAACTGAAG
ACATCAACAGTGTATCAAGAGGAGTATTACTCGATGCTGATTATTTTTTA
GAGAATGCTAAAGAAGGTTTTGGTTTTCCTCTTGGTCTTATTGGATGTAT
CGATTTTGATGGTAAACATGTCAGCAACAAAATCCTTGATTTAGGAACCA
TCTACGGTAATGGAGCCTTGTATCCTGATTTATCCACATTCAAGAAGCTT
CCCTGGAGAACCAATGTAGCATCTGCCATATGTGATCTAAGCACAACCTT
TGGAGATTTGAATACATCGAACTTCCACACAAGATCAATCTGTAAGCAGC
AATTCAGGAAATTGAACCAATTAGGATTTGACTTAAAATCGGCATCAGAA
TATGAATACTATGTTGTTAACAAAGAAACATTAAAACCTCTAGATGAAAC
AGATAATTTTGTATCTACATTGTTTAATGAGGAGAAATTTGGAATCGCAA
GTCAAATTATGTATTCTTTGAAGAAGATTGGAGTCTTTCCTGAAAAGTTT
CACATGGAATGTGCGCCTTCAATGTTTGAGATTACCTTTAAACCAAGTTT
TGGAATCAAAGGCCCTGATAATGCCATTCGATACCGCTCTACTGTCAAAG
AGGTTTGTAGAAAAGAGGGAGTCGAAGCTCTTTTTATGACTACACCTTTC
AAAGATGAATATAAATCGACTTCGAATTTCAATCACTCTTTATGGAGTCT
CACTGAGAAGACAAACGTATTTTACGATGCAGCCAATTCACACAAGCTTT
ctgaaaaaggtcaaaattggTTGGCTGGATTGAAAGCACATTCAAAAGCA
TTGTTATGTTTAGCGATGCCGACCTACAATTGTTATCATCATTTTCAAGA
AGAATTCAAACCAATGATGGGGATGAATACTGCATGGGGGTATGATAATC
GTACAGCAGGCTACCGTGTCAAAGTCATCAACGAAAAATCCACCCTCATT
GAGCATCGTCAACCGACATCTGCAGTCAATCCATACTTATACACGGCAGG
GTTACTTATTGCTGGTATGGACGGATTGAAAAGAGGCCTTCAGCTCACAG
ATCCTCCTCATGATGGTATAGTCGATAACGAACCTGAATGTAGCCCTTAT
TTTGATATTCCAAAAACTTTGGATGAAGCATTGCGTTGTTTTCAGGAAGA
TGAATTGTTTGTCAAGGAGTTTGGGGAAGAGTTTATTGAAGTGTACGTCA
CTTTGAAGAAAAATGAGATTCAAAGAGTtgaagaaatgaagaaattgaGT
AACGGTGATGAGAAACTTTTGTGGAAATTATATACAAAATATTATCAAAC
TTtgtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069189-exon-scaffold_496-1491911889:341290..341399 | TCONS_00069189-exon-scaffold_496-1491911889:341290..341399 | Clytia hemisphaerica | exon |
| TCONS_00069189-exon-scaffold_496-1510915933:341290..341399 | TCONS_00069189-exon-scaffold_496-1510915933:341290..341399 | Clytia hemisphaerica | exon |
| TCONS_00069189-exon-scaffold_496-1575043694:341290..341399 | TCONS_00069189-exon-scaffold_496-1575043694:341290..341399 | Clytia hemisphaerica | exon |
| TCONS_00069189-exon-scaffold_496-1491911889:341700..343273 | TCONS_00069189-exon-scaffold_496-1491911889:341700..343273 | Clytia hemisphaerica | exon |
| TCONS_00069189-exon-scaffold_496-1510915933:341700..343273 | TCONS_00069189-exon-scaffold_496-1510915933:341700..343273 | Clytia hemisphaerica | exon |
| TCONS_00069189-exon-scaffold_496-1575043694:341700..343273 | TCONS_00069189-exon-scaffold_496-1575043694:341700..343273 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_496 | supercontig | scaffold_496:341290..343273 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004356 | glutamate-ammonia ligase activity |
| GO:0003824 | catalytic activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006807 | nitrogen compound metabolic process |
| GO:0006542 | glutamine biosynthetic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006542 |
glutamine biosynthetic process |
| biological_process |
GO:0006807 |
nitrogen compound metabolic process |
| molecular_function |
GO:0003824 |
catalytic activity |
| molecular_function |
GO:0004356 |
glutamate-ammonia ligase activity |
Blast
BLAST of TCONS_00069189 vs. Swiss-Prot (Human)
Match: LGSN (Lengsin OS=Homo sapiens GN=LGSN PE=1 SV=1) HSP 1 Score: 210.69 bits (535), Expect = 2.338e-60 Identity = 139/433 (32.10%), Postives = 209/433 (48.27%), Query Frame = 2
Query: 170 ISESITKEQIHFVRLETEDINSVSRGVLLDADYFLENAKEGFGFPLGLIGCIDFDGKHVSNKILDLGTIYGNG-ALYPDLSTFKKLPWRTNVASAICDLSTTFGD-LNTSNFHTRSICKQQFRKLNQLGFDLKSASEYEYYVVNKETLKPLDETDNFVSTLFNEEKFGIASQIMYSLKKIGVFPEKFHMECAPSMFEITFKPSFGIKGPDNAIRYRSTVKEVCRKEG-VEALFMTTPFKDEYKSTSNFNHSLWSLTEKTNVFYDAANSHKLSEKGQNWLAGLKAHSKALLCLAMPTYNCYHHFQEEFKPM-MGMNTAWGYDNRTAGYRVKVINEKSTLIEHRQPTSAVNPYLYTAGLLIAGMDGLKRGLQLTDPPHDGIVDNEPECSPYFDIPKTLDEALRCFQEDELFVKEFGEEFIEVYVTLKKNEIQRVE 1456
I +++ K ++ FVR E D++ VSR + A +F E G P G + I + N I T + + L P+LSTF+ LPW A ICD T G+ L TS R I K+Q L GF L SA Y++ + + T N +++ L G E F P EI+F P FGI DNA R+ VKEV RK + + F+ T F D + +HSLW + K N+F + + +L+ G+ WLAGL HS AL CL P+ +C + ++ K + + T WGY++ + + +K EK T IE++ ++ NPYL A + AG+DGL ++ P + + E S +IP L++AL +ED+ + GE FI +V +KK E++ E
Sbjct: 76 IRQAMAKNRLQFVRFEATDLHGVSRSKTIPAHFFQEKVSHGVCMPRGYLEVIPNPKDNEMNNIR--ATCFNSDIVLMPELSTFRVLPWADRTARVICDTFTVTGEPLLTS---PRYIAKRQLSHLQASGFSLLSAFIYDFCIFGVPEILNSKIISFPALTFLNNHDQPFMQELVDGLYHTGANVESFSSSTRPGQMEISFLPEFGISSADNAFTLRTGVKEVARKYNYIASFFIETGFCD----SGILSHSLWDVDRKKNMFCSTSGTEQLTITGKKWLAGLLKHSAALSCLMAPSVSCRKRYSKDRKDLKKSVPTTWGYNDNSCIFNIKCHGEKGTRIENKLGSATANPYLVLAATVAAGLDGLHSSNEVLAGPDESTDFYQVEPS---EIPLKLEDALVALEEDQCLRQALGETFIRYFVAMKKYELENEE 496
The following BLAST results are available for this feature:
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