TCONS_00069189 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069189
Unique NameTCONS_00069189
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1684

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069189 ID=TCONS_00069189|Name=TCONS_00069189|organism=Clytia hemisphaerica|type=transcript|length=1684bp
AAAATGAGGATTTTCTGTCGCGTATACTATCGGGGCTGAAGTAACTTAAT
AGGTTTTAATGCAAAGATGCTTGCCAATTTCACTTATATTTTGAATATGA
AATCTTTTCTGATAATTCTAAAAAATGGATACCAAAGACGAAATAACCAA
CGGGAACTTATACAACGAAATATCTGAATCAATCACTAAAGAACAAATTC
ATTTCGTCCGTCTTGAAACTGAAGACATCAACAGTGTATCAAGAGGAGTA
TTACTCGATGCTGATTATTTTTTAGAGAATGCTAAAGAAGGTTTTGGTTT
TCCTCTTGGTCTTATTGGATGTATCGATTTTGATGGTAAACATGTCAGCA
ACAAAATCCTTGATTTAGGAACCATCTACGGTAATGGAGCCTTGTATCCT
GATTTATCCACATTCAAGAAGCTTCCCTGGAGAACCAATGTAGCATCTGC
CATATGTGATCTAAGCACAACCTTTGGAGATTTGAATACATCGAACTTCC
ACACAAGATCAATCTGTAAGCAGCAATTCAGGAAATTGAACCAATTAGGA
TTTGACTTAAAATCGGCATCAGAATATGAATACTATGTTGTTAACAAAGA
AACATTAAAACCTCTAGATGAAACAGATAATTTTGTATCTACATTGTTTA
ATGAGGAGAAATTTGGAATCGCAAGTCAAATTATGTATTCTTTGAAGAAG
ATTGGAGTCTTTCCTGAAAAGTTTCACATGGAATGTGCGCCTTCAATGTT
TGAGATTACCTTTAAACCAAGTTTTGGAATCAAAGGCCCTGATAATGCCA
TTCGATACCGCTCTACTGTCAAAGAGGTTTGTAGAAAAGAGGGAGTCGAA
GCTCTTTTTATGACTACACCTTTCAAAGATGAATATAAATCGACTTCGAA
TTTCAATCACTCTTTATGGAGTCTCACTGAGAAGACAAACGTATTTTACG
ATGCAGCCAATTCACACAAGCTTTctgaaaaaggtcaaaattggTTGGCT
GGATTGAAAGCACATTCAAAAGCATTGTTATGTTTAGCGATGCCGACCTA
CAATTGTTATCATCATTTTCAAGAAGAATTCAAACCAATGATGGGGATGA
ATACTGCATGGGGGTATGATAATCGTACAGCAGGCTACCGTGTCAAAGTC
ATCAACGAAAAATCCACCCTCATTGAGCATCGTCAACCGACATCTGCAGT
CAATCCATACTTATACACGGCAGGGTTACTTATTGCTGGTATGGACGGAT
TGAAAAGAGGCCTTCAGCTCACAGATCCTCCTCATGATGGTATAGTCGAT
AACGAACCTGAATGTAGCCCTTATTTTGATATTCCAAAAACTTTGGATGA
AGCATTGCGTTGTTTTCAGGAAGATGAATTGTTTGTCAAGGAGTTTGGGG
AAGAGTTTATTGAAGTGTACGTCACTTTGAAGAAAAATGAGATTCAAAGA
GTtgaagaaatgaagaaattgaGTAACGGTGATGAGAAACTTTTGTGGAA
ATTATATACAAAATATTATCAAACTTtgtaagaatttctttttaggcttt
cctAAAAAAATGGGGAAAGCGGAAATATTAATTAGTTATTGTGGCTGTGA
AAAGGTTTTATTAATGACTggtcgaaatattaagaacttaAGTAGAaaac
tagaaatccaaacagaaaatagacaacgaAAAAT
Run BLAST on NCBI

protein sequence of TCONS_00069189-protein

>TCONS_00069189-protein ID=TCONS_00069189-protein|Name=TCONS_00069189-protein|organism=Clytia hemisphaerica|type=polypeptide|length=468bp
MDTKDEITNGNLYNEISESITKEQIHFVRLETEDINSVSRGVLLDADYFL
ENAKEGFGFPLGLIGCIDFDGKHVSNKILDLGTIYGNGALYPDLSTFKKL
PWRTNVASAICDLSTTFGDLNTSNFHTRSICKQQFRKLNQLGFDLKSASE
YEYYVVNKETLKPLDETDNFVSTLFNEEKFGIASQIMYSLKKIGVFPEKF
HMECAPSMFEITFKPSFGIKGPDNAIRYRSTVKEVCRKEGVEALFMTTPF
KDEYKSTSNFNHSLWSLTEKTNVFYDAANSHKLSEKGQNWLAGLKAHSKA
LLCLAMPTYNCYHHFQEEFKPMMGMNTAWGYDNRTAGYRVKVINEKSTLI
EHRQPTSAVNPYLYTAGLLIAGMDGLKRGLQLTDPPHDGIVDNEPECSPY
FDIPKTLDEALRCFQEDELFVKEFGEEFIEVYVTLKKNEIQRVEEMKKLS
NGDEKLLWKLYTKYYQTL
Run BLAST on NCBI

transcript from alignment at scaffold_496:341290..343273+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069189 ID=TCONS_00069189|Name=TCONS_00069189|organism=Clytia hemisphaerica|type=transcript|length=1984bp|location=Sequence derived from alignment at scaffold_496:341290..343273+ (Clytia hemisphaerica)
AAAATGAGGATTTTCTGTCGCGTATACTATCGGGGCTGAAGTAACTTAAT
AGGTTTTAATGCAAAGATGCTTGCCAATTTCACTTATATTTTGAATATGA
AATCTTTTCTGTGAGTAATTTTCTAGATATTTTATATGGGTCATCTATAT
CCAGATATCATTTAAATTCTGGCTTAATTAGCAGGTCAACATCCTACATT
GGTATTGGTATCCTAGTTTGCAAGAGTTTCTGTTCTGACGTCAGTCACTT
GCTGaacaatttttatattatagTATTATCATCGACGGTTTTATCCACAT
TCGTATTTTTACTGACAGCTAACTTGAAATGGACTTTCTAGTATACTTTT
TCCCGGTTACCCCGCACAAGAGCTCTAATGTTCACATATCTATCTCATCT
TCATAAACAGGATAATTCTAAAAAATGGATACCAAAGACGAAATAACCAA
CGGGAACTTATACAACGAAATATCTGAATCAATCACTAAAGAACAAATTC
ATTTCGTCCGTCTTGAAACTGAAGACATCAACAGTGTATCAAGAGGAGTA
TTACTCGATGCTGATTATTTTTTAGAGAATGCTAAAGAAGGTTTTGGTTT
TCCTCTTGGTCTTATTGGATGTATCGATTTTGATGGTAAACATGTCAGCA
ACAAAATCCTTGATTTAGGAACCATCTACGGTAATGGAGCCTTGTATCCT
GATTTATCCACATTCAAGAAGCTTCCCTGGAGAACCAATGTAGCATCTGC
CATATGTGATCTAAGCACAACCTTTGGAGATTTGAATACATCGAACTTCC
ACACAAGATCAATCTGTAAGCAGCAATTCAGGAAATTGAACCAATTAGGA
TTTGACTTAAAATCGGCATCAGAATATGAATACTATGTTGTTAACAAAGA
AACATTAAAACCTCTAGATGAAACAGATAATTTTGTATCTACATTGTTTA
ATGAGGAGAAATTTGGAATCGCAAGTCAAATTATGTATTCTTTGAAGAAG
ATTGGAGTCTTTCCTGAAAAGTTTCACATGGAATGTGCGCCTTCAATGTT
TGAGATTACCTTTAAACCAAGTTTTGGAATCAAAGGCCCTGATAATGCCA
TTCGATACCGCTCTACTGTCAAAGAGGTTTGTAGAAAAGAGGGAGTCGAA
GCTCTTTTTATGACTACACCTTTCAAAGATGAATATAAATCGACTTCGAA
TTTCAATCACTCTTTATGGAGTCTCACTGAGAAGACAAACGTATTTTACG
ATGCAGCCAATTCACACAAGCTTTctgaaaaaggtcaaaattggTTGGCT
GGATTGAAAGCACATTCAAAAGCATTGTTATGTTTAGCGATGCCGACCTA
CAATTGTTATCATCATTTTCAAGAAGAATTCAAACCAATGATGGGGATGA
ATACTGCATGGGGGTATGATAATCGTACAGCAGGCTACCGTGTCAAAGTC
ATCAACGAAAAATCCACCCTCATTGAGCATCGTCAACCGACATCTGCAGT
CAATCCATACTTATACACGGCAGGGTTACTTATTGCTGGTATGGACGGAT
TGAAAAGAGGCCTTCAGCTCACAGATCCTCCTCATGATGGTATAGTCGAT
AACGAACCTGAATGTAGCCCTTATTTTGATATTCCAAAAACTTTGGATGA
AGCATTGCGTTGTTTTCAGGAAGATGAATTGTTTGTCAAGGAGTTTGGGG
AAGAGTTTATTGAAGTGTACGTCACTTTGAAGAAAAATGAGATTCAAAGA
GTtgaagaaatgaagaaattgaGTAACGGTGATGAGAAACTTTTGTGGAA
ATTATATACAAAATATTATCAAACTTtgtaagaatttctttttaggcttt
cctAAAAAAATGGGGAAAGCGGAAATATTAATTAGTTATTGTGGCTGTGA
AAAGGTTTTATTAATGACTggtcgaaatattaagaacttaAGTAGAaaac
tagaaatccaaacagaaaatagacaacgaAAAAT

Coding sequence (CDS) from alignment at scaffold_496:341290..343273+

>TCONS_00069189 ID=TCONS_00069189|Name=TCONS_00069189|organism=Clytia hemisphaerica|type=CDS|length=1407bp|location=Sequence derived from alignment at scaffold_496:341290..343273+ (Clytia hemisphaerica)
ATGGATACCAAAGACGAAATAACCAACGGGAACTTATACAACGAAATATC
TGAATCAATCACTAAAGAACAAATTCATTTCGTCCGTCTTGAAACTGAAG
ACATCAACAGTGTATCAAGAGGAGTATTACTCGATGCTGATTATTTTTTA
GAGAATGCTAAAGAAGGTTTTGGTTTTCCTCTTGGTCTTATTGGATGTAT
CGATTTTGATGGTAAACATGTCAGCAACAAAATCCTTGATTTAGGAACCA
TCTACGGTAATGGAGCCTTGTATCCTGATTTATCCACATTCAAGAAGCTT
CCCTGGAGAACCAATGTAGCATCTGCCATATGTGATCTAAGCACAACCTT
TGGAGATTTGAATACATCGAACTTCCACACAAGATCAATCTGTAAGCAGC
AATTCAGGAAATTGAACCAATTAGGATTTGACTTAAAATCGGCATCAGAA
TATGAATACTATGTTGTTAACAAAGAAACATTAAAACCTCTAGATGAAAC
AGATAATTTTGTATCTACATTGTTTAATGAGGAGAAATTTGGAATCGCAA
GTCAAATTATGTATTCTTTGAAGAAGATTGGAGTCTTTCCTGAAAAGTTT
CACATGGAATGTGCGCCTTCAATGTTTGAGATTACCTTTAAACCAAGTTT
TGGAATCAAAGGCCCTGATAATGCCATTCGATACCGCTCTACTGTCAAAG
AGGTTTGTAGAAAAGAGGGAGTCGAAGCTCTTTTTATGACTACACCTTTC
AAAGATGAATATAAATCGACTTCGAATTTCAATCACTCTTTATGGAGTCT
CACTGAGAAGACAAACGTATTTTACGATGCAGCCAATTCACACAAGCTTT
ctgaaaaaggtcaaaattggTTGGCTGGATTGAAAGCACATTCAAAAGCA
TTGTTATGTTTAGCGATGCCGACCTACAATTGTTATCATCATTTTCAAGA
AGAATTCAAACCAATGATGGGGATGAATACTGCATGGGGGTATGATAATC
GTACAGCAGGCTACCGTGTCAAAGTCATCAACGAAAAATCCACCCTCATT
GAGCATCGTCAACCGACATCTGCAGTCAATCCATACTTATACACGGCAGG
GTTACTTATTGCTGGTATGGACGGATTGAAAAGAGGCCTTCAGCTCACAG
ATCCTCCTCATGATGGTATAGTCGATAACGAACCTGAATGTAGCCCTTAT
TTTGATATTCCAAAAACTTTGGATGAAGCATTGCGTTGTTTTCAGGAAGA
TGAATTGTTTGTCAAGGAGTTTGGGGAAGAGTTTATTGAAGTGTACGTCA
CTTTGAAGAAAAATGAGATTCAAAGAGTtgaagaaatgaagaaattgaGT
AACGGTGATGAGAAACTTTTGTGGAAATTATATACAAAATATTATCAAAC
TTtgtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043128XLOC_043128Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069189-proteinTCONS_00069189-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069189-exon-scaffold_496-1491911889:341290..341399TCONS_00069189-exon-scaffold_496-1491911889:341290..341399Clytia hemisphaericaexon
TCONS_00069189-exon-scaffold_496-1510915933:341290..341399TCONS_00069189-exon-scaffold_496-1510915933:341290..341399Clytia hemisphaericaexon
TCONS_00069189-exon-scaffold_496-1575043694:341290..341399TCONS_00069189-exon-scaffold_496-1575043694:341290..341399Clytia hemisphaericaexon
TCONS_00069189-exon-scaffold_496-1491911889:341700..343273TCONS_00069189-exon-scaffold_496-1491911889:341700..343273Clytia hemisphaericaexon
TCONS_00069189-exon-scaffold_496-1510915933:341700..343273TCONS_00069189-exon-scaffold_496-1510915933:341700..343273Clytia hemisphaericaexon
TCONS_00069189-exon-scaffold_496-1575043694:341700..343273TCONS_00069189-exon-scaffold_496-1575043694:341700..343273Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_496supercontigscaffold_496:341290..343273 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0240527	0.0469104	0.0817011	0.0266439	69.8169	47.8814	10.2005	9.06342	1.89762	5.32513	1.4684	0.29028	4.68801	4.43745	0.404727	0.403019	26.4642	16.8505	5.52018	7.09373	29.6889	30.5899	0.0584083	0.0752182	0.0516487	0	0.0679268	0.0351983	0.16018	0.0815989
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008146Gln_synth_cat_dom
IPR008147Gln_synt_b-grasp
IPR014746Gln_synth/guanido_kin_cat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004356glutamate-ammonia ligase activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0006807nitrogen compound metabolic process
GO:0006542glutamine biosynthetic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006542 glutamine biosynthetic process
biological_process GO:0006807 nitrogen compound metabolic process
molecular_function GO:0003824 catalytic activity
molecular_function GO:0004356 glutamate-ammonia ligase activity
Blast
[Close]
BLAST of TCONS_00069189 vs. Swiss-Prot (Human)
Match: LGSN (Lengsin OS=Homo sapiens GN=LGSN PE=1 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 2.338e-60
Identity = 139/433 (32.10%), Postives = 209/433 (48.27%), Query Frame = 2 
Query:  170 ISESITKEQIHFVRLETEDINSVSRGVLLDADYFLENAKEGFGFPLGLIGCIDFDGKHVSNKILDLGTIYGNG-ALYPDLSTFKKLPWRTNVASAICDLSTTFGD-LNTSNFHTRSICKQQFRKLNQLGFDLKSASEYEYYVVNKETLKPLDETDNFVSTLFNEEKFGIASQIMYSLKKIGVFPEKFHMECAPSMFEITFKPSFGIKGPDNAIRYRSTVKEVCRKEG-VEALFMTTPFKDEYKSTSNFNHSLWSLTEKTNVFYDAANSHKLSEKGQNWLAGLKAHSKALLCLAMPTYNCYHHFQEEFKPM-MGMNTAWGYDNRTAGYRVKVINEKSTLIEHRQPTSAVNPYLYTAGLLIAGMDGLKRGLQLTDPPHDGIVDNEPECSPYFDIPKTLDEALRCFQEDELFVKEFGEEFIEVYVTLKKNEIQRVE 1456
            I +++ K ++ FVR E  D++ VSR   + A +F E    G   P G +  I     +  N I    T + +   L P+LSTF+ LPW    A  ICD  T  G+ L TS    R I K+Q   L   GF L SA  Y++ +     +           T  N        +++  L   G   E F     P   EI+F P FGI   DNA   R+ VKEV RK   + + F+ T F D    +   +HSLW +  K N+F   + + +L+  G+ WLAGL  HS AL CL  P+ +C   + ++ K +   + T WGY++ +  + +K   EK T IE++  ++  NPYL  A  + AG+DGL    ++   P +     + E S   +IP  L++AL   +ED+   +  GE FI  +V +KK E++  E
Sbjct:   76 IRQAMAKNRLQFVRFEATDLHGVSRSKTIPAHFFQEKVSHGVCMPRGYLEVIPNPKDNEMNNIR--ATCFNSDIVLMPELSTFRVLPWADRTARVICDTFTVTGEPLLTS---PRYIAKRQLSHLQASGFSLLSAFIYDFCIFGVPEILNSKIISFPALTFLNNHDQPFMQELVDGLYHTGANVESFSSSTRPGQMEISFLPEFGISSADNAFTLRTGVKEVARKYNYIASFFIETGFCD----SGILSHSLWDVDRKKNMFCSTSGTEQLTITGKKWLAGLLKHSAALSCLMAPSVSCRKRYSKDRKDLKKSVPTTWGYNDNSCIFNIKCHGEKGTRIENKLGSATANPYLVLAATVAAGLDGLHSSNEVLAGPDESTDFYQVEPS---EIPLKLEDALVALEEDQCLRQALGETFIRYFVAMKKYELENEE 496
The following BLAST results are available for this feature:
BLAST of TCONS_00069189 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LGSN2.338e-6032.10Lengsin OS=Homo sapiens GN=LGSN PE=1 SV=1[more]
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