TCONS_00068822 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068822
Unique NameTCONS_00068822
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1946

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068822 ID=TCONS_00068822|Name=TCONS_00068822|organism=Clytia hemisphaerica|type=transcript|length=1946bp
ATTTCCCTAATAATTAATTTCaactttattatttttaattacGTCACAAC
CAGATTCTGACCCCTTAAGGTATAGGTCATCAAAAACCGTTAGTGAATCT
CTGAGATAATGGGTGCTATTGATCGCACAATTTGGGATTTGTGATTAAAA
AAGAATCTAGACAGGGCCTACAGTAACTCACGCGAGCTGGAAATTTTCAG
ATGATATGTAAATGTTAGATTGaaagtttcaagaaaaaaatgacttaTCC
GACGAAACAATATGATTATCATTTCAGTGTAATTATAAAgaactaaaaga
aaaagaaaatatatattatcaAGCAACAATATGGTGCTGGTATCTTTCCA
ATCTCTCGCGAGGACATCCGTCCTCTTCACCAATAAAGCAAATAGCACCA
TCCTTATACGAAACATTGAGAAATGCTTCATTTGTGCTGACATTGCAAAT
TCCAAACGTTACAAGGCGAAATGGAATTCTAAATTCCCGAAAAATGATGG
CATGTCCCGGATGGAGAAACTTGCAGAAAAATTGAACCCACCGATGAGTG
ATCGAGAGAAAAATGTTCCTTTACCTCCTGACATGGGTACTAAAGTGGAT
AGCACGAATCAGATTTTCAGCAGTTACATTCCAGTGGAGAAGAAAAGTTC
CATGGTTTCAAGACAAGGTGTATCACAGAGGTGGGAAGCTTTCAAAGCTA
TGCTAATGTCCACCTATGGGGTAGCAATGATCAAACGAAAAGTCTCTTTC
AAAGCAGTGGACTTTTCGAAATTTGCTCAACAGAAATATATTGAAGTCAA
CGAAGCTctacagaaaaatgaaaaAACACGTGACATCGTGATGAAAGAAA
ACGCCACACTAATGATTGGGCGGGCTTTGAAAACGCAATACCAGAACCCC
GGTAAGACGTTGGAATGGAAGTTTATTCAAGAAGTGGACCGGCCTCGTGT
CGTGCACGCTCGTGTTGCTTCGGTCTTCGATAAAGAGAATTTGTACGCTC
AAGTCACCGTCCGTATGCACACTCAACAAatTCTGGCGATAAAAGATCGA
TACAATCGAACAGTTATGGGCGACTCGAAGAAAGGGAGGAAGGTTATCGA
TTACGTTGTTTTCGAAAGACATTTAGCTGACCCTTACGGTCGATGGAGAA
TCTGTGGCAAGTTGAACCATCCAAAACCAGAAAATCAAAAAGCGCTGACA
acgtcttcttcttcttcagctCAAAATACTGCAGCTACTTCTTAAACTTA
TGACCAAGATAGGACAGACTTAACGTTATTGACAATGGGCTGTTACATAA
AAAAACCATACAttggggtggacgaaccttttcaagtcaaaaagaaattg
tGGATAACCCCtggtaaaatgtcaaaatttgcaaaaataccccttggaaa
aattcttttcataccttaaagcgagggtggacgaactaaaatcagtcttt
taacccctggaaattttggaatgattttttacccccttggaaattttgga
atgattttttacccccttggaaaaatgaaaatacacccCTGGAATTTTTT
CTCtgaccccctgtatggatataaaatggaatgacccaATCGCTTGTATG
GAATTTCTAGTGTAAAAATCAAAACGGAAAACTTTTATGAGGTTTGTCCG
TATGTGATTGGCtttgttcattttttcagaATCGCAATAATATCTAATGT
ATTTTCCacgagaaaattttttatctctcTTCTATCTCTGACTTTTTAGA
AAGTTAAGGAAAACGGTCCTATTTAACACATGAATGAGtatttttttcgt
gtttttcgGAAAAATTGTATACTTTGAATCTAAAAATTGACGCAAGATCT
GTGAGAGGTATACTTTTTTGCATTCAGAAAAGTTATGAATGATTTACACC
CTAATAGGATTTTTACTTCAATGTGTGAGATAAGCGTATACAATAT
Run BLAST on NCBI

protein sequence of TCONS_00068822-protein

>TCONS_00068822-protein ID=TCONS_00068822-protein|Name=TCONS_00068822-protein|organism=Clytia hemisphaerica|type=polypeptide|length=304bp
MVLVSFQSLARTSVLFTNKANSTILIRNIEKCFICADIANSKRYKAKWNS
KFPKNDGMSRMEKLAEKLNPPMSDREKNVPLPPDMGTKVDSTNQIFSSYI
PVEKKSSMVSRQGVSQRWEAFKAMLMSTYGVAMIKRKVSFKAVDFSKFAQ
QKYIEVNEALQKNEKTRDIVMKENATLMIGRALKTQYQNPGKTLEWKFIQ
EVDRPRVVHARVASVFDKENLYAQVTVRMHTQQILAIKDRYNRTVMGDSK
KGRKVIDYVVFERHLADPYGRWRICGKLNHPKPENQKALTTSSSSSAQNT
AATS
Run BLAST on NCBI

transcript from alignment at scaffold_49:955672..965143+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068822 ID=TCONS_00068822|Name=TCONS_00068822|organism=Clytia hemisphaerica|type=transcript|length=9472bp|location=Sequence derived from alignment at scaffold_49:955672..965143+ (Clytia hemisphaerica)
ATTTCCCTAATAATTAATTTCaactttattatttttaattacGTCACAAC
CAGATTCTGACCCCTTAAGGTATAGGTCATCAAAAACCGTTAGTGAATCT
CTGAGATAATGGGTGCTATTGATCGCACAATTTGGGATTTGTGATTAAAA
AAGAATCTAGACAGGGCCTACAGTAACTCACGCGAGCTGGAAATTTTCAG
ATGATATGTAAATGTTAGATTGaaagtttcaagaaaaaaatgacttaTCC
GACGAAACAATATGATTATCATTTCAGTGTAATTATAAAgaactaaaaga
aaaagaaaatatatattatcaAGCAACAATATGGTGCTGGTATCTTTCCA
ATCTCTCGCGAGGACATCCGTCCTCTTCACCAATAAAGCAAATGTAAGTA
TGCTAGTCTAGTCCTTATTTTGTGATTCGCttttcgaacttctattattt
gaatctttctataattcgaatttgtTTCCAGAAAccttcttaaaatattt
tatctaatttgaatctctctataattcgaacggATAtgattccccgttcg
agttcgaattagagagagtcaactgtacttTGTTTTCACTAGAAGTAATC
ACTTATGATGATTTTAATCACCCCTATTTTACAAGGCGAGTTGTTCTTCT
AGTAGCAATCTAGGGTCAATTTTCTCAACAGAAAGAGTTGTGATAGATTT
AGATTCACTTTTAACCAAACACTATCTCAAATATCTTTATAGAGCACCAT
CCTTATACGAAACATTGAGAAATGCTTCATTTGTGCTGACATTGCAAATT
CCAAACGTTACAAGGCGAAATGGAATTCTAAATTCCCGAAAAATGATGGC
ATGTCCCGGATGGAGAAACTTGCAGAAAAATTGAACCCACCGATGAGTGA
TCGAGAGAAAAATGTTCCTTTACCTCCTGACATGGGTACTAAAGTGGATA
GCACGAGTAAGTGAGAAAGGGTTTTATTTGGACGTCTTAGCCCTTGGTCC
ACTTGAGGCTTTTTTATAGCCTGGATGGCGTGATTAGGTGGAAGGACTTC
ACTGGACTCGGCTTCATCAACAATTATCAGAAAGCAAAGCCTCAAAAAAG
ATTTAGTCTAATGACTTCTGGACTTGTGGGTATGGTGGCTGCCCTATCTT
GCTATCTCATAATTTTGTCCCAGTTTAACCATAGTACTATTACACTAtga
cgttttttatttttgtctccACAGATCAGATTTTCAGCAGTTACATTCCA
GTGGAGAAGAAAAGTTCCATGGTTTCAAGACAAGTGAGTAACTTTGGGct
tgttttagaaaatgaagTATTTTTCATTAATCATAGCTTAGATTACTATT
TTTGATTGATCCACCAGGTCTACTAACAAATGTAAcgcaatacatgtttt
ttttataagcaagtgtatgccgcttggtcaggctcgtgtatgcttaagtt
ctcaaagtattcaggcatagtttatgcttattatatgcttaagaatcatg
cttatgattcacctcgagccaagtttttagtgaaatttcagaaattttgt
aaaaatttgttcagattttggggcagtggaatgtaggaaaccgtggaaag
tctttttttttacttgacctctaccaaacctttttaaaccgataaaaatg
acaacttgaaaaatatttcaggctgacatatatatgcttatgttatgttt
aggaattctgcaaatctgagccttcatatgcttataagcgttatgcttat
aaaaaaaacatgtactccTTGAATTTCAGGGTGTATCACAGAGGTGGGAA
GCTTTCAAAGCTATGCTAATGTCCACCTATGGGTAAGCCAACATTGTCAT
GTTTTTATCGACTAGAACGAAGTAAATTTCCATTGGATGTATTTTCCAAA
TTAAACTGAGGTTTTTTTAGAAAGGTTCTGTAATCAATTTTGATCCGTAA
GATGAACGGCTGTGCTATCTTGTTAATCCATTAAAAGACCAAATATCAAG
AGAAAAGACACAATCTAAAGTTTGCGTTTATCGACCCAGTGGTATTAATA
TTGAAAGTTTATCGTGGATTGGATcgcgagatttacgtttggttacgttt
cgagagattcttctcccatcatcgggcaacGTGGAGGATGTTTTCTCCAC
TATTTCCANTACATTTGGCTACGTTTCGGTAGATTCTTTTCCCACCATCG
GACAATGCGGAGGATGTTTCCACTATTTGTACTAAGACCTTCTGATTACC
CATAATAAGAAAAGGGACAAATCAATAGCCTGTTCTTATTGTCGCCGTCA
TCTTATTCATAATAAGTTATAATATTTCTAGGGTAGCAATGATCAAACGA
AAAGTCTCTTTCAAAGCAGTGGACTTTTCGAAATTTGCTCAACAGAAATA
TATTGAAGTCAACGAAGCTctacagaaaaatgaaaagtaaGAAACCATTA
ATCTATCCATTGCTTGATCCAGATGCATCAATTTGTTTTGTTCACTAAGC
CTAGAGTAGAAAGTTGAAATTcggtatatattttttcttctctaatcact
tcttttttggacctacctggaggtcctataaattaacctttgcgtccgtc
cgtccgtctgttaccagcttttctcgagattggctcatcagttttttccg
atttttctgatttttggcacaaaggaacaaaatagcaatgcctgaaatgt
gtcattggattttttcgttttatatcttttttttttttattattatttat
aagaattcccacgattaagcatggttcaattttaaatgaaactgattttg
gtagccgaaactttcttaaaatcgccagaacagcctagaaccgccggaaa
aacggttttcttgaattttgatTTATGAGGGGTCAGAACTTTTGATTTGC
CAATTTGATTTTATCGTAGCACTTTTGCGCCATCCGAACTTTTATAACTT
TAGCGCGCTGGAATGTTGAGTAAATTTTTGTGAAGTTGAGCCCAAATACG
CAAACGTGTTAACAATGATAATGCACTGTGATATTTAGTGTTTTTGGTTT
TCAATTGAACTAATTATTCTAGTATTCCTCAGAAATCGCCGGAAGAGCAA
AAAATCACTAGGAAACCGTTCGCTCGTCCGTTCTTTTTTCACGATCTTTT
CGATTATCACTTTAAATTACAGTCAactttccataactcgaacctcctcA
AATCGATTATCTCTATAACGATTTTTCCTGTCTCTTGAGGAGATTTTCAG
GCTATTTTGCCTCTCTAGAACTCAAATTTCTGTAACTCAGAGGATTACTG
ATTATCCCCTTGGCGTTCCAGCACTCGACTATACTTCCCTACTTGGTCTA
ACTTCAGGACGGTCCAATCAGCGTTCCggcttcttcttttttctttctga
aCAATTCTCCGAAAAAAAACGATCTATTCATTTATTGCAGAACACGTGAC
ATCGTGATGAAAGAAAACGCCACACTAATGATTGGGCGGGTAAGTCAAGT
ATTTTGCCTTTGGTTCGATTGGTGCATAATACAGCACCCCCATTTCGTAG
GCCCGATTAAACCCTCTGCATATTTGCAAAATTTGCTCTAAAATTTGTTC
CTCAGTATAAAATACACTTGGCTGTAAAGACGGGGCTGTTGGAGTTTTGA
CTTCAGCAACATATTTTCAATTCGTAGTAGTAGTAGATTATGATAATTgt
ggaaagaaaaattgagGTCGATTTTATTTGTGTCATATCATTAccttaaa
ataattataaattttacaagataaataagaaaattataattgtGATTTTT
GCCGTTGCCGAGAAGTTGTCCAATGATCGGTAATCTTTCTGTGCTACGAG
TTACGCTTTCACGTATTTACCGCACGCTGGTTTTGTGCAATTCCATTTTC
CACATTTACGAATGACAATGAACTTCAAACATCTTCGGGAACATTGGCGT
GAACAAAAGCGGCAATACTTTTGGTTGAAATATTTCTTGTAGTAGACTTT
ACGCCAGCAAGTTCTGCTCACTCTTTTGAAGTAGAATTTCCAGACGAAGA
TACGGCGTATGACGCATTGTCGGTATCTATGGAAACGCTTTTGGGTTTCC
ACCTTGAGCACTTTGGCCTTtggatctgtaaaataaattTAGATAAACTA
TTGAAGTGTGGGACTAGAATAGGATAAAATATTTACCTTGGCTGAGAGTT
ATTGTTGCCTTTTGCTCTAAAACCAAAATCTCGCtttaatattcttataa
aaagcgtgtatttagaTTGGCAAGAGTGAAGTATTTTATATTATGTAAAG
AATGAGGATTGGAATTTCCAAATGGAGTTTCCAATTTGTGACTGTTTGTT
ATAGGTAATAAAGATACTGCAATTTAACCCAAATGTTAGAGGTAAAGTTG
TGGGAGAGTGGCTAATTTGTTGGGCTAGTGACAAAATTTTCCTTCGTTTT
CCCGGTAAAGTACCTTGTTCTTCTTCATCCTTTAATAATTCTTCATCGTT
TTGTGGCTCGTCTTTTTCACTCTCTGCTTCTGTTTCTTCTTGCCCGTCCG
TCTCATCTTCAGTTTTACTCTCATCTATCTCATCCGACTCTTCTGGTTCG
TCCGATTCGGGTTCATCGGATTCTTTTTCGGGTTCATCGGATTCTTTTTC
GGGTTCATCGGATTTATTTTCAGGTTCGTTTTCCAATTCATCTGATTCTT
TTTCAGATTCATCGGATTCATTTTCAGATTCATCGGATTCATTTTCGGAT
TCATCGGATTCATTTTCGGATTCATTTTCGGATTCATCGGATTCATTTTC
GGATTCATCGGATTCATTTTCGGATTCATCGGATTCTTTTTCAGATTCAT
CGGATTCGATGTCTGATCCGTTTTGTGATTCATCTTCGTCGGATAGATTT
TCGGGTTCACTATCGGGTTCTAAAGATTCATCATCGGATTCATCGGAATC
AGTTTCGAGTTCATCCTCTTTCATGTCTTGTAAATCGGTTTCTTCATCTT
GgcgaaaatcttcattttctaattCTTTGGGTTCATCGTCCAATGAATTt
tcacctgaaaaaaaaaacaaataatttttaattttgaaatacctACCTCG
TTgttcgaatttttttaaagctGGTAGGGTTGAAGAgcttaacctttcaa
agccgctaacttttttgaaaaaggccaaaaatttcatcatttttttctgt
aaatttattttttcaaaggcaatttctcgaccaggacaaacgattcaggt
atcaactttgccatcgttggaaagctctttctctcagctacaaaaaatag
cagattttttttctctgaatctcaagtggtcaggagttatgaccaaaaga
ctgtatcggtaaaatgaccttttctaaacgtatatatacgtcttTCGACT
CCTAAGGGTTAATACAAATGCGGGAACATTGATTCATTTTGTTGCTTTCc
attaaaaaatgttcaaaattgaATCTTGGACAAGTTAACTCTACTAAAAG
TTCGGAATAGTTACTGTAAGGTTTAGTTAAAATCTGTAATCAAAACTATT
TTTACTACGGAATATAACACTACACACAAAAATGATGTTCGAATTACACT
TTTttgtttaagaaatattttaaaagaacaacgaggctcaaaatcgccat
aaaataagaacatactaagaaCAATGATCAGCctggaattactcaatttc
aagcagtTTATGTTATTTATGTAATAGGCAATTTAGGTCAAAgctagtaa
aaattgggtaaaaagcttaaaatacctcaattccaccctataaataagaa
catgacaagaacaatttgaggctcaaagtgccaaaaagataagaacagtc
gagtgtcagcaaaattttactggttcttctAAATAAAAGTATACCCAAAT
TAGATCTTTTTACTTACAATTAATTGTGAATACCAAGAAGGCTAACAAGA
AAATCCCTTTCCAAATCTTCATTCTGATTTCGTCTTTGAACGTTCAACCA
TTAAGATTGAATGTCTTTCTCACTTTCAGATTTGCATTTTTATAGTGTTT
TTTAAGTGTTGTAAACCCACTAAGTGCTTCATGGTTGTCGCATATTTTTA
ATAGACAGCATGATGTTTAATGATTTTATGATGCATGGTAGAAACTGTCT
CATTTTGggattataattttctcgaaagccacatggaaaaaatgaaaaag
tttaattatTCGCTTGATGATTTCCTTTGCTACTTATAAGCATCATTCTA
TAAAGTATAATTGTAGATTTCTCAGGTCTTTTGCTCACATACAAGACACT
TATCAAGACAAGCACAGGTTTTTGAGGACTGAATTATCAGTCTAGTAACA
ACACTGTTGGTTTTTAGGCTGATAAGAATGTTTTTTGCTAAAGTTTTAGC
ATTCACTTAATTTATTTTGGATTTATAAGAAAATCTCCTAAGAAGTATCA
TGTTCTTTCAAATAATTACTATGATTAATTACACTTAAAGTATAACCAAG
GCTCAATTAGAGATAATTGGGGTAGAAAACGTCCATGCTTGTGGGTTCAT
TTTCTACAATTGTTATTTATTCAGAAACTGTTTCGACAGTATGCTTTTTC
TTCTCCATTTGTATTTTCATTCGTATACTTAACTTCCTCATATGCTTGCT
TTATTGCaaatacagttgatgctctctaattcgacgttctactattagat
aggctctcttattcgatgaaatttaaagtccccgtcaacaagaaactctc
ttaaacgacgctcccttattcgataagctcccttattcgataagctccct
tattcgataagctcccttattcgatgaaaatccaattccccttgaagatc
gaattagagagcgtaaaCTGTAATAATACCAAAGATGGCTGGAGAATGAT
ATCCCTTTATCAGACTTTAAAGTGAATAGTAGATATGTATAAAGAGTTAT
TTAACCCTaatatccccaggggggggggNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Ncccttattcaatgaaaatccaattccccttgaagatcgaattaaagaga
gcgTAAACTGTAATAATACCAAAGATGGCCGGATTAAGATATCCCTTTAT
CAGACTTTAAAGTGAATAGTAGATAATATGTAAAAAGAGttatttaaccc
tattagcctcaggggggggtagaatcgtCCACGCTGGTGTTATTTTGTGC
ATatctcgaaaaaaaaaattgtgataaCGTCATCGCTTTTTGAATGcctt
caacaaattttttttcctcccTGGAAGTTTGTGTCATGATAGATCTGTAC
CAATTGTTATGGCCGAAGCTTTTCTAGATCTCCCCTGGAGCCGCAAAAAC
CAAAAGAGCTCGGGGTTAATAgggttaaaaacaaaaaacctttTACCTTT
GAGTCTACAGCACTGTGGTTGAGTTGTTTACCTTTTCGTTTGTTAGCAAA
TACATGTTTATATACATACAAGGGATTCTTCGGAATTTCTGactgttttt
gaattttattgtaTATTTTGTGTATCTTTGACAAttccttcttttctttt
caggCTTTGAAAACGCAATACCAGAACCCTGGTAAGAGGTTGGAATGGAA
GTTTATTCAAGAAGTGNCAGGCTTTGAAAACGCAATACCAGAACCCCGGT
AAGACGTTGGAATGGAAGTTTATTCAAGAAGTGGACCGGCCTCGTGTCGT
GCACGCTCGTGTTGCTTCGGTCTTCGATAAAGAGAATTTGTACGCTCAAG
TCACCGTCCGTATGCACACTCAACAAGTAAGTACCAAGtactcgtttttt
ataagaacaagctatataagaacacaaggcttcgatggccaaaatatttt
aataataaGAGCTAAGTACATTTTAAGGCGTtttggactctaaaacatcc
gaATTCTTAGaataatggacaaaaatactcacaaaatggtgaaaataaga
acatgttgagaacttttttaggctcaaaattcaaaaacctAGGAACATCC
Gaatgcttcaaaaaatttggatatttttataaaaaacatgtactaaaata
atttaaacatATTTATTGTGACACGAATTTTATCGAATCATCCATAGGAG
CAATTAAAGTAGAGCACTCGGCTATGGTGCGTAATTTTGTATAATTAACC
CCATAATACCATCATACTAAAGACATCGAAAAATTGTATTTCACGGTTTT
CCCTATTTTGGacacatttcttttatttttctagagatttttcaaacttt
ttggcAAAATCTCGAGTGATTTCAGCACAGCTCCTTGAAATGGTCTTTGT
TAGCTTTTTATGATGGTCATGTAATACNAGTTCTTTGAAAGAAACGGGCA
GCGTTAACTTTTATGATGGTTCTACGATGTCATGAAatactttttccttt
ttcagatTCTGGCGATAAAAGATCGATACAATCGAACAGTTATGGGCGAC
TCGAAGAAAGGGAGGAAGGTTATCGATTACGTTGTTTTCGAAAGACATTT
AGCTGACCCTTACGGTCGATGGAGAATCTGTGGCAAGTTGAACCATCCAA
AACCAGAAAATCAAAAAGCGCTGACAacgtcttcttcttcttcagctCAA
AATACTGCAGCTACTTCTTAAACTTATGACCAAGATAGGACAGACTTAAC
GTTATTGACAATGGGCTGTTACATAAAAAAACCATACAttggggtggacg
aaccttttcaagtcaaaaagaaattgtGGATAACCCCtggtaaaatgtca
aaatttgcaaaaataccccttggaaaaattcttttcataccttaaagcga
gggtggacgaactaaaatcagtcttttaacccctggaaattttggaatga
ttttttacccccttggaaattttggaatgattttttacccccttggaaaa
atgaaaatacacccCTGGAATTTTTTCTCtgaccccctgtatggatataa
aatggaatgacccaATCGCTTGTATGGAATTTCTAGTGTAAAAATCAAAA
CGGAAAACTTTTATGAGGTTTGTCCGTATGTGATTGGCtttgttcatttt
ttcagaATCGCAATAATATCTAATGTATTTTCCacgagaaaattttttat
ctctcTTCTATCTCTGACTTTTTAGAAAGTTAAGGAAAACGGTCCTATTT
AACACATGAATGAGtatttttttcgtgtttttcgGAAAAATTGTATACTT
TGAATCTAAAAATTGACGCAAGATCTGTGAGAGGTATACTTTTTTGCATT
CAGAAAAGTTATGAATGATTTACACCCTAATAGGATTTTTACTTCAATGT
GTGAGATAAGCGTATACAATAT

Coding sequence (CDS) from alignment at scaffold_49:955672..965143+

>TCONS_00068822 ID=TCONS_00068822|Name=TCONS_00068822|organism=Clytia hemisphaerica|type=CDS|length=7320bp|location=Sequence derived from alignment at scaffold_49:955672..965143+ (Clytia hemisphaerica)
ATGGTGCTGGTATCTTTCCAATCTCTCGCGAGGACATCCGTCCTCTTCAC
CAATAAAGCAAATAGCACCATCCTTATACGAAACATTGAGAAATGCTTCA
TTTGTGCTGACATTGCAAATTCCAAACGTTACAAGGCGAAATGGAATTCT
AAATTCCCGAAAAATGATGGCATGTCCCGGATGGAGAAACTTGCAGAAAA
ATTGAACCCACCGATGAGTGATCGAGAGAAAAATGTTCCTTTACCTCCTG
ACATGGGTACTAAAGTGGATAGCACGAATCAGATTTTCAGCAGTTACATT
CCAGTGGAGAAGAAAAGTTCCATGGTTTCAAGACAAGGTGTATCACAGAG
GTGGGAAGCTTTCAAAGCTATGCTAATGTCCACCTATGGGGTAGCAATGA
TCAAACGAAAAGTCTCTTTCAAAGCAGTGGACTTTTCGAAATTTGCTCAA
CAGAAATATATTGAAGTCAACGAAGCTctacagaaaaatgaaaaAACACG
TGACATCGTGATGAAAGAAAACGCCACACTAATGATTGGGCGGGCTTTGA
AAACGCAATACCAGAACCCCGGTAAGACGTTGGAATGGAAGTTTATTCAA
GAAGTGGACCGGCCTCGTGTCGTGCACGCTCGTGTTGCTTCGGTCTTCGA
TAAAGAGAATTTGTACGCTCAAGTCACCGTCCGTATGCACACTCAACAAa
tTCTGGCGATAAAAGATCGATACAATCGAACAGTTATGGGCGACTCGAAG
AAAGGGAGGAAGGTTATCGATTACGTTGTTTTCGAAAGACATTTAGCTGA
CCCTTACGGTCGATGGAGAATCTGTGGCAAGTTGAACCATCCAAAACCAG
AAAATCAAAAAGCGCTGACAacgtcttcttcttcttcagctCAAAATACT
GCAGCTACTTCTTAAATGGTGCTGGTATCTTTCCAATCTCTCGCGAGGAC
ATCCGTCCTCTTCACCAATAAAGCAAATAGCACCATCCTTATACGAAACA
TTGAGAAATGCTTCATTTGTGCTGACATTGCAAATTCCAAACGTTACAAG
GCGAAATGGAATTCTAAATTCCCGAAAAATGATGGCATGTCCCGGATGGA
GAAACTTGCAGAAAAATTGAACCCACCGATGAGTGATCGAGAGAAAAATG
TTCCTTTACCTCCTGACATGGGTACTAAAGTGGATAGCACGAATCAGATT
TTCAGCAGTTACATTCCAGTGGAGAAGAAAAGTTCCATGGTTTCAAGACA
AGGTGTATCACAGAGGTGGGAAGCTTTCAAAGCTATGCTAATGTCCACCT
ATGGGGTAGCAATGATCAAACGAAAAGTCTCTTTCAAAGCAGTGGACTTT
TCGAAATTTGCTCAACAGAAATATATTGAAGTCAACGAAGCTctacagaa
aaatgaaaaAACACGTGACATCGTGATGAAAGAAAACGCCACACTAATGA
TTGGGCGGGCTTTGAAAACGCAATACCAGAACCCCGGTAAGACGTTGGAA
TGGAAGTTTATTCAAGAAGTGGACCGGCCTCGTGTCGTGCACGCTCGTGT
TGCTTCGGTCTTCGATAAAGAGAATTTGTACGCTCAAGTCACCGTCCGTA
TGCACACTCAACAAatTCTGGCGATAAAAGATCGATACAATCGAACAGTT
ATGGGCGACTCGAAGAAAGGGAGGAAGGTTATCGATTACGTTGTTTTCGA
AAGACATTTAGCTGACCCTTACGGTCGATGGAGAATCTGTGGCAAGTTGA
ACCATCCAAAACCAGAAAATCAAAAAGCGCTGACAacgtcttcttcttct
tcagctCAAAATACTGCAGCTACTTCTTAAATGGTGCTGGTATCTTTCCA
ATCTCTCGCGAGGACATCCGTCCTCTTCACCAATAAAGCAAATAGCACCA
TCCTTATACGAAACATTGAGAAATGCTTCATTTGTGCTGACATTGCAAAT
TCCAAACGTTACAAGGCGAAATGGAATTCTAAATTCCCGAAAAATGATGG
CATGTCCCGGATGGAGAAACTTGCAGAAAAATTGAACCCACCGATGAGTG
ATCGAGAGAAAAATGTTCCTTTACCTCCTGACATGGGTACTAAAGTGGAT
AGCACGAATCAGATTTTCAGCAGTTACATTCCAGTGGAGAAGAAAAGTTC
CATGGTTTCAAGACAAGGTGTATCACAGAGGTGGGAAGCTTTCAAAGCTA
TGCTAATGTCCACCTATGGGGTAGCAATGATCAAACGAAAAGTCTCTTTC
AAAGCAGTGGACTTTTCGAAATTTGCTCAACAGAAATATATTGAAGTCAA
CGAAGCTctacagaaaaatgaaaaAACACGTGACATCGTGATGAAAGAAA
ACGCCACACTAATGATTGGGCGGGCTTTGAAAACGCAATACCAGAACCCC
GGTAAGACGTTGGAATGGAAGTTTATTCAAGAAGTGGACCGGCCTCGTGT
CGTGCACGCTCGTGTTGCTTCGGTCTTCGATAAAGAGAATTTGTACGCTC
AAGTCACCGTCCGTATGCACACTCAACAAatTCTGGCGATAAAAGATCGA
TACAATCGAACAGTTATGGGCGACTCGAAGAAAGGGAGGAAGGTTATCGA
TTACGTTGTTTTCGAAAGACATTTAGCTGACCCTTACGGTCGATGGAGAA
TCTGTGGCAAGTTGAACCATCCAAAACCAGAAAATCAAAAAGCGCTGACA
acgtcttcttcttcttcagctCAAAATACTGCAGCTACTTCTTAAATGGT
GCTGGTATCTTTCCAATCTCTCGCGAGGACATCCGTCCTCTTCACCAATA
AAGCAAATAGCACCATCCTTATACGAAACATTGAGAAATGCTTCATTTGT
GCTGACATTGCAAATTCCAAACGTTACAAGGCGAAATGGAATTCTAAATT
CCCGAAAAATGATGGCATGTCCCGGATGGAGAAACTTGCAGAAAAATTGA
ACCCACCGATGAGTGATCGAGAGAAAAATGTTCCTTTACCTCCTGACATG
GGTACTAAAGTGGATAGCACGAATCAGATTTTCAGCAGTTACATTCCAGT
GGAGAAGAAAAGTTCCATGGTTTCAAGACAAGGTGTATCACAGAGGTGGG
AAGCTTTCAAAGCTATGCTAATGTCCACCTATGGGGTAGCAATGATCAAA
CGAAAAGTCTCTTTCAAAGCAGTGGACTTTTCGAAATTTGCTCAACAGAA
ATATATTGAAGTCAACGAAGCTctacagaaaaatgaaaaAACACGTGACA
TCGTGATGAAAGAAAACGCCACACTAATGATTGGGCGGGCTTTGAAAACG
CAATACCAGAACCCCGGTAAGACGTTGGAATGGAAGTTTATTCAAGAAGT
GGACCGGCCTCGTGTCGTGCACGCTCGTGTTGCTTCGGTCTTCGATAAAG
AGAATTTGTACGCTCAAGTCACCGTCCGTATGCACACTCAACAAatTCTG
GCGATAAAAGATCGATACAATCGAACAGTTATGGGCGACTCGAAGAAAGG
GAGGAAGGTTATCGATTACGTTGTTTTCGAAAGACATTTAGCTGACCCTT
ACGGTCGATGGAGAATCTGTGGCAAGTTGAACCATCCAAAACCAGAAAAT
CAAAAAGCGCTGACAacgtcttcttcttcttcagctCAAAATACTGCAGC
TACTTCTTAAATGGTGCTGGTATCTTTCCAATCTCTCGCGAGGACATCCG
TCCTCTTCACCAATAAAGCAAATAGCACCATCCTTATACGAAACATTGAG
AAATGCTTCATTTGTGCTGACATTGCAAATTCCAAACGTTACAAGGCGAA
ATGGAATTCTAAATTCCCGAAAAATGATGGCATGTCCCGGATGGAGAAAC
TTGCAGAAAAATTGAACCCACCGATGAGTGATCGAGAGAAAAATGTTCCT
TTACCTCCTGACATGGGTACTAAAGTGGATAGCACGAATCAGATTTTCAG
CAGTTACATTCCAGTGGAGAAGAAAAGTTCCATGGTTTCAAGACAAGGTG
TATCACAGAGGTGGGAAGCTTTCAAAGCTATGCTAATGTCCACCTATGGG
GTAGCAATGATCAAACGAAAAGTCTCTTTCAAAGCAGTGGACTTTTCGAA
ATTTGCTCAACAGAAATATATTGAAGTCAACGAAGCTctacagaaaaatg
aaaaAACACGTGACATCGTGATGAAAGAAAACGCCACACTAATGATTGGG
CGGGCTTTGAAAACGCAATACCAGAACCCCGGTAAGACGTTGGAATGGAA
GTTTATTCAAGAAGTGGACCGGCCTCGTGTCGTGCACGCTCGTGTTGCTT
CGGTCTTCGATAAAGAGAATTTGTACGCTCAAGTCACCGTCCGTATGCAC
ACTCAACAAatTCTGGCGATAAAAGATCGATACAATCGAACAGTTATGGG
CGACTCGAAGAAAGGGAGGAAGGTTATCGATTACGTTGTTTTCGAAAGAC
ATTTAGCTGACCCTTACGGTCGATGGAGAATCTGTGGCAAGTTGAACCAT
CCAAAACCAGAAAATCAAAAAGCGCTGACAacgtcttcttcttcttcagc
tCAAAATACTGCAGCTACTTCTTAAATGGTGCTGGTATCTTTCCAATCTC
TCGCGAGGACATCCGTCCTCTTCACCAATAAAGCAAATAGCACCATCCTT
ATACGAAACATTGAGAAATGCTTCATTTGTGCTGACATTGCAAATTCCAA
ACGTTACAAGGCGAAATGGAATTCTAAATTCCCGAAAAATGATGGCATGT
CCCGGATGGAGAAACTTGCAGAAAAATTGAACCCACCGATGAGTGATCGA
GAGAAAAATGTTCCTTTACCTCCTGACATGGGTACTAAAGTGGATAGCAC
GAATCAGATTTTCAGCAGTTACATTCCAGTGGAGAAGAAAAGTTCCATGG
TTTCAAGACAAGGTGTATCACAGAGGTGGGAAGCTTTCAAAGCTATGCTA
ATGTCCACCTATGGGGTAGCAATGATCAAACGAAAAGTCTCTTTCAAAGC
AGTGGACTTTTCGAAATTTGCTCAACAGAAATATATTGAAGTCAACGAAG
CTctacagaaaaatgaaaaAACACGTGACATCGTGATGAAAGAAAACGCC
ACACTAATGATTGGGCGGGCTTTGAAAACGCAATACCAGAACCCCGGTAA
GACGTTGGAATGGAAGTTTATTCAAGAAGTGGACCGGCCTCGTGTCGTGC
ACGCTCGTGTTGCTTCGGTCTTCGATAAAGAGAATTTGTACGCTCAAGTC
ACCGTCCGTATGCACACTCAACAAatTCTGGCGATAAAAGATCGATACAA
TCGAACAGTTATGGGCGACTCGAAGAAAGGGAGGAAGGTTATCGATTACG
TTGTTTTCGAAAGACATTTAGCTGACCCTTACGGTCGATGGAGAATCTGT
GGCAAGTTGAACCATCCAAAACCAGAAAATCAAAAAGCGCTGACAacgtc
ttcttcttcttcagctCAAAATACTGCAGCTACTTCTTAAATGGTGCTGG
TATCTTTCCAATCTCTCGCGAGGACATCCGTCCTCTTCACCAATAAAGCA
AATAGCACCATCCTTATACGAAACATTGAGAAATGCTTCATTTGTGCTGA
CATTGCAAATTCCAAACGTTACAAGGCGAAATGGAATTCTAAATTCCCGA
AAAATGATGGCATGTCCCGGATGGAGAAACTTGCAGAAAAATTGAACCCA
CCGATGAGTGATCGAGAGAAAAATGTTCCTTTACCTCCTGACATGGGTAC
TAAAGTGGATAGCACGAATCAGATTTTCAGCAGTTACATTCCAGTGGAGA
AGAAAAGTTCCATGGTTTCAAGACAAGGTGTATCACAGAGGTGGGAAGCT
TTCAAAGCTATGCTAATGTCCACCTATGGGGTAGCAATGATCAAACGAAA
AGTCTCTTTCAAAGCAGTGGACTTTTCGAAATTTGCTCAACAGAAATATA
TTGAAGTCAACGAAGCTctacagaaaaatgaaaaAACACGTGACATCGTG
ATGAAAGAAAACGCCACACTAATGATTGGGCGGGCTTTGAAAACGCAATA
CCAGAACCCCGGTAAGACGTTGGAATGGAAGTTTATTCAAGAAGTGGACC
GGCCTCGTGTCGTGCACGCTCGTGTTGCTTCGGTCTTCGATAAAGAGAAT
TTGTACGCTCAAGTCACCGTCCGTATGCACACTCAACAAatTCTGGCGAT
AAAAGATCGATACAATCGAACAGTTATGGGCGACTCGAAGAAAGGGAGGA
AGGTTATCGATTACGTTGTTTTCGAAAGACATTTAGCTGACCCTTACGGT
CGATGGAGAATCTGTGGCAAGTTGAACCATCCAAAACCAGAAAATCAAAA
AGCGCTGACAacgtcttcttcttcttcagctCAAAATACTGCAGCTACTT
CTTAAATGGTGCTGGTATCTTTCCAATCTCTCGCGAGGACATCCGTCCTC
TTCACCAATAAAGCAAATAGCACCATCCTTATACGAAACATTGAGAAATG
CTTCATTTGTGCTGACATTGCAAATTCCAAACGTTACAAGGCGAAATGGA
ATTCTAAATTCCCGAAAAATGATGGCATGTCCCGGATGGAGAAACTTGCA
GAAAAATTGAACCCACCGATGAGTGATCGAGAGAAAAATGTTCCTTTACC
TCCTGACATGGGTACTAAAGTGGATAGCACGAATCAGATTTTCAGCAGTT
ACATTCCAGTGGAGAAGAAAAGTTCCATGGTTTCAAGACAAGGTGTATCA
CAGAGGTGGGAAGCTTTCAAAGCTATGCTAATGTCCACCTATGGGGTAGC
AATGATCAAACGAAAAGTCTCTTTCAAAGCAGTGGACTTTTCGAAATTTG
CTCAACAGAAATATATTGAAGTCAACGAAGCTctacagaaaaatgaaaaA
ACACGTGACATCGTGATGAAAGAAAACGCCACACTAATGATTGGGCGGGC
TTTGAAAACGCAATACCAGAACCCCGGTAAGACGTTGGAATGGAAGTTTA
TTCAAGAAGTGGACCGGCCTCGTGTCGTGCACGCTCGTGTTGCTTCGGTC
TTCGATAAAGAGAATTTGTACGCTCAAGTCACCGTCCGTATGCACACTCA
ACAAatTCTGGCGATAAAAGATCGATACAATCGAACAGTTATGGGCGACT
CGAAGAAAGGGAGGAAGGTTATCGATTACGTTGTTTTCGAAAGACATTTA
GCTGACCCTTACGGTCGATGGAGAATCTGTGGCAAGTTGAACCATCCAAA
ACCAGAAAATCAAAAAGCGCTGACAacgtcttcttcttcttcagctCAAA
ATACTGCAGCTACTTCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042908XLOC_042908Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068822-exon-scaffold_49-1491911889:955672..956064TCONS_00068822-exon-scaffold_49-1491911889:955672..956064Clytia hemisphaericaexon
TCONS_00068822-exon-scaffold_49-1510915933:955672..956064TCONS_00068822-exon-scaffold_49-1510915933:955672..956064Clytia hemisphaericaexon
TCONS_00068822-exon-scaffold_49-1575043694:955672..956064TCONS_00068822-exon-scaffold_49-1575043694:955672..956064Clytia hemisphaericaexon
TCONS_00068822-exon-scaffold_49-1491911889:956414..956627TCONS_00068822-exon-scaffold_49-1491911889:956414..956627Clytia hemisphaericaexon
TCONS_00068822-exon-scaffold_49-1510915933:956414..956627TCONS_00068822-exon-scaffold_49-1510915933:956414..956627Clytia hemisphaericaexon
TCONS_00068822-exon-scaffold_49-1575043694:956414..956627TCONS_00068822-exon-scaffold_49-1575043694:956414..956627Clytia hemisphaericaexon
TCONS_00068822-exon-scaffold_49-1491911889:956896..956954TCONS_00068822-exon-scaffold_49-1491911889:956896..956954Clytia hemisphaericaexon
TCONS_00068822-exon-scaffold_49-1510915933:956896..956954TCONS_00068822-exon-scaffold_49-1510915933:956896..956954Clytia hemisphaericaexon
TCONS_00068822-exon-scaffold_49-1575043694:956896..956954TCONS_00068822-exon-scaffold_49-1575043694:956896..956954Clytia hemisphaericaexon
TCONS_00068822-exon-scaffold_49-1491911889:957451..957503TCONS_00068822-exon-scaffold_49-1491911889:957451..957503Clytia hemisphaericaexon
TCONS_00068822-exon-scaffold_49-1510915933:957451..957503TCONS_00068822-exon-scaffold_49-1510915933:957451..957503Clytia hemisphaericaexon
TCONS_00068822-exon-scaffold_49-1575043694:957451..957503TCONS_00068822-exon-scaffold_49-1575043694:957451..957503Clytia hemisphaericaexon
TCONS_00068822-exon-scaffold_49-1491911889:958003..958107TCONS_00068822-exon-scaffold_49-1491911889:958003..958107Clytia hemisphaericaexon
TCONS_00068822-exon-scaffold_49-1510915933:958003..958107TCONS_00068822-exon-scaffold_49-1510915933:958003..958107Clytia hemisphaericaexon
TCONS_00068822-exon-scaffold_49-1575043694:958003..958107TCONS_00068822-exon-scaffold_49-1575043694:958003..958107Clytia hemisphaericaexon
TCONS_00068822-exon-scaffold_49-1491911889:959112..959160TCONS_00068822-exon-scaffold_49-1491911889:959112..959160Clytia hemisphaericaexon
TCONS_00068822-exon-scaffold_49-1510915933:959112..959160TCONS_00068822-exon-scaffold_49-1510915933:959112..959160Clytia hemisphaericaexon
TCONS_00068822-exon-scaffold_49-1575043694:959112..959160TCONS_00068822-exon-scaffold_49-1575043694:959112..959160Clytia hemisphaericaexon
TCONS_00068822-exon-scaffold_49-1491911889:963442..963597TCONS_00068822-exon-scaffold_49-1491911889:963442..963597Clytia hemisphaericaexon
TCONS_00068822-exon-scaffold_49-1510915933:963442..963597TCONS_00068822-exon-scaffold_49-1510915933:963442..963597Clytia hemisphaericaexon
TCONS_00068822-exon-scaffold_49-1575043694:963442..963597TCONS_00068822-exon-scaffold_49-1575043694:963442..963597Clytia hemisphaericaexon
TCONS_00068822-exon-scaffold_49-1491911889:964227..965143TCONS_00068822-exon-scaffold_49-1491911889:964227..965143Clytia hemisphaericaexon
TCONS_00068822-exon-scaffold_49-1510915933:964227..965143TCONS_00068822-exon-scaffold_49-1510915933:964227..965143Clytia hemisphaericaexon
TCONS_00068822-exon-scaffold_49-1575043694:964227..965143TCONS_00068822-exon-scaffold_49-1575043694:964227..965143Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068822-proteinTCONS_00068822-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:955672..965143 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
43.0161	41.1077	17.3375	15.9324	29.0606	20.1872	17.824	19.7594	16.433	17.8553	14.8339	12.4666	13.7024	15.1633	11.9439	12.5248	24.9276	21.7021	4.54127	6.68315	17.9946	18.9613	30.4447	25.9098	18.9116	21.6506	8.95567	7.374	14.4609	15.6604
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007379Tim44-like_dom
IPR032710NTF2-like_dom
Blast
[Close]
BLAST of TCONS_00068822 vs. Swiss-Prot (Human)
Match: RM45 (39S ribosomal protein L45, mitochondrial OS=Homo sapiens GN=MRPL45 PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 1.034e-27
Identity = 72/223 (32.29%), Postives = 119/223 (53.36%), Query Frame = 1 
Query:  553 REKNVPLPP---DMGTKVDSTNQIFSSYIPVEKKS--SMVSRQGVSQRWEAFKAMLMSTYGVAMIK-RKVSFKAVDFSKFAQQKYIEVNEALQKNEKTR-DIVMKENATLMIGRALKTQYQNPGKTLEWKFIQEVDRPRVVHARVASVFDKENLYAQVTVRMHTQQILAIKDRYNRTVMGDSKKGRKVIDYVVFERHLADPYGRWRICGKLNHP-KPENQKAL 1197
            R+  + +PP   D    +  T  IF +Y+P E  +  S +S++G+ +R E  K  + S   +  IK    +FK  DF + A+  +IE +  L  ++  R   ++ E+    +   +K       KT+ W F++ ++   VV  R +S+ ++ N+Y Q+TVRMHT+Q LAI DR+ R + G     + V++YVVFE+ L +PYG WR+  K+  P  P  Q  L
Sbjct:   61 RKAGLVIPPEKSDRSIHLACTAGIFDAYVPPEGDARISSLSKEGLIERTERMKKTMASQVSIRRIKDYDANFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIKY------KTVRWSFVESLEPSHVVQVRCSSMMNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQEDVPKDVLEYVVFEKQLTNPYGSWRMHTKIVPPWAPPKQPIL 277
The following BLAST results are available for this feature:
BLAST of TCONS_00068822 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RM451.034e-2732.2939S ribosomal protein L45, mitochondrial OS=Homo s... [more]
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