TCONS_00068822-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00068822-protein
Unique NameTCONS_00068822-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length304

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00068822-protein ID=TCONS_00068822-protein|Name=TCONS_00068822-protein|organism=Clytia hemisphaerica|type=polypeptide|length=304bp
MVLVSFQSLARTSVLFTNKANSTILIRNIEKCFICADIANSKRYKAKWNS
KFPKNDGMSRMEKLAEKLNPPMSDREKNVPLPPDMGTKVDSTNQIFSSYI
PVEKKSSMVSRQGVSQRWEAFKAMLMSTYGVAMIKRKVSFKAVDFSKFAQ
QKYIEVNEALQKNEKTRDIVMKENATLMIGRALKTQYQNPGKTLEWKFIQ
EVDRPRVVHARVASVFDKENLYAQVTVRMHTQQILAIKDRYNRTVMGDSK
KGRKVIDYVVFERHLADPYGRWRICGKLNHPKPENQKALTTSSSSSAQNT
AATS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_042908XLOC_042908Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00068822TCONS_00068822Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007379Tim44-like_dom
IPR032710NTF2-like_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007379Tim44-like domainSMARTSM00978Tim44_a_2coord: 126..279
e-value: 9.2E-4
score: 17.8
IPR007379Tim44-like domainPFAMPF04280Tim44coord: 133..276
e-value: 7.4E-18
score: 65.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 283..304
IPR032710NTF2-like domainSUPERFAMILY54427NTF2-likecoord: 132..277

Blast
[Close]
BLAST of TCONS_00068822-protein vs. Swiss-Prot (Human)
Match: RM45 (39S ribosomal protein L45, mitochondrial OS=Homo sapiens GN=MRPL45 PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.954e-30
Identity = 73/225 (32.44%), Postives = 120/225 (53.33%), Query Frame = 0 
Query:   75 REKNVPLPP---DMGTKVDSTNQIFSSYIPVEKKS--SMVSRQGVSQRWEAFKAMLMSTYGVAMIK-RKVSFKAVDFSKFAQQKYIEVNEALQKNEKTR-DIVMKENATLMIGRALKTQYQNPGKTLEWKFIQEVDRPRVVHARVASVFDKENLYAQVTVRMHTQQILAIKDRYNRTVMGDSKKGRKVIDYVVFERHLADPYGRWRICGKLNHP-KPENQKALTT 291
            R+  + +PP   D    +  T  IF +Y+P E  +  S +S++G+ +R E  K  + S   +  IK    +FK  DF + A+  +IE +  L  ++  R   ++ E+    +   +K       KT+ W F++ ++   VV  R +S+ ++ N+Y Q+TVRMHT+Q LAI DR+ R + G     + V++YVVFE+ L +PYG WR+  K+  P  P  Q  L T
Sbjct:   61 RKAGLVIPPEKSDRSIHLACTAGIFDAYVPPEGDARISSLSKEGLIERTERMKKTMASQVSIRRIKDYDANFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIKY------KTVRWSFVESLEPSHVVQVRCSSMMNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQEDVPKDVLEYVVFEKQLTNPYGSWRMHTKIVPPWAPPKQPILKT 279
The following BLAST results are available for this feature:
BLAST of TCONS_00068822-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RM451.954e-3032.4439S ribosomal protein L45, mitochondrial OS=Homo s... [more]
back to top