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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068777 ID=TCONS_00068777|Name=TCONS_00068777|organism=Clytia hemisphaerica|type=transcript|length=1242bp
atggactCTCGGCCTGTGTTGAAGCGGAAAGACTTGAGGGTTGATCAGCA
GATCTTGTCTATTATTAATTTGGTCATCTTTTTGTCATATGGCCTGCTCA
AGTGttccaatatctttccaacattAAAAgcaTCGAAAGAATTACCGGAC
GAAGATCAAAAACCGGTCGCCAAACCGAAAGAGAAATCTCCAAAAGCCga
aaagaaaaaggagaaaaaacaaaagaaaaagaagaagaaaaagaagggcA
AAGGAGGAGAGTTGGGAAAGATCGATGAAGATGTGGGGGAGAGTGACGTC
ATCACTGACCCTCCTTCGTCATCGTTCGTCGATGAATCTTCAGAATCAAA
AATCGAAAGTTCAACGAAAGAGCCGGTGGATGGCAGTCAATCACCATCTT
ATGAACgtaaattgatgacgtcagacAACAAAAAGGCAAACATGACCCTG
CTGGAACAATCTATCGAAGCTGAACGTCAAACTTCACTAGAACCGCAAAC
TATGACGTTCGTTATCGAAAACATTCCGGAAAACGGTAAAAGTCCGGTCA
ACACCAGTACTCCGACCGATAAAAATGCAATCCAACAGATAATTGTGGAA
GAAGAGGAGCACAATACTTTGGACTTTGGTAAATACATATTGGTTGACCC
GAACACAGGAGATATTGCCGTGATGAGGAATCGTTCACGGAGTTTAGACA
GCCTCGTTTCAATACAATCTAATCGATCAAGTATCTCCAAGTTTGGCAGT
TTTGAATTCGTCACAGACTATGAATTGACAATCGCCGAGAAAAATCAACA
attgaaaagttgatttttgagGAGGTATAGTTTTTAAATGGAATCAGTAT
GGAATTTTGTATGTGAAACATATGCGATGTTTTTCGATAGTGGTGGTGGT
GAGTGATTCCACAATGAGAATTGGTGTCTAAATGAAACTTCAAATCTTCT
TCAATATAAAACTTGTTGAATGGAATGGGGGAAAGGGGCCGTCATATTTT
AGAACTCTAGTTCTTTATTTATCTTTGTATTAAATTTATTCTTTATATTT
TCATCTCAAAAGCATTTTTCATGCACCGTTCAAATGTTCACCATACTCAC
TCACTTTTCAACGTGAATTCACAACACAAAACATTCCTCGAGGATTAagg
tcggtctccacttgcgcgcgctgcaatcgcactttttggcttcaatcctt
tttgcttggaaaaaagattacgtcataaaaatgtagcgcgcg Run BLAST on NCBI transcript from alignment at scaffold_49:307376..311458+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068777 ID=TCONS_00068777|Name=TCONS_00068777|organism=Clytia hemisphaerica|type=transcript|length=4083bp|location=Sequence derived from alignment at scaffold_49:307376..311458+ (Clytia hemisphaerica)
atggactCTCGGCCTGTGTTGAAGCGGAAAGACTTGAGGGTTGATCAGCA
GATCTTGTCTATTATTAATTTGGTCATCTTTTTGTCATATGGCCTGCTCA
AGTGttccaatatctttccaacattAAAAGTAAGATAAAAACTCTACACT
TAAGTCTTGTCCGGGCATTGTCCAGAGAAAATAAATATTcatattatatt
ttcaattagaAATCCAACTTTGGTTATTTTATTAAGTTTGTTANTATTca
tattatattttcaattagaAATCCAACTTTGGTTATTTAattaagtttgt
ttttattttaggcaTCGAAAGAATTACCGGACGAAGATCAAAAACCGGTC
GCCAAACCGAAAGAGAAATCTCCAAAAGCCgaaaagaaaaaggagaaaaa
acaaaagaaaaagaagaagaaaaagaagggcAAAGGAGGAGAGTTGGGAA
AGATCGATGAAGATGTGGGGGAGAGTGACGTCATCACTGACCCTCCTTCG
TCATCGTTCGTCGATGAATCTTCAGAATCAAAAATCGAAAGTTCAACGAA
AGAGGTGcgctatgtttttgttttgttttacgCACTATCTATCTTTAAAT
GCATGCTTGTATAACGTACATTATTTAACGCACTCGTCTTTTCATTTCGA
GGTCTCGCCTTTCCCAAACAAAAGCTTTGGAATTCTCCAGAAAAAACTTA
TTTTGCCATTAATTCGATGAGGACCGTTTGAAATTGTTATGATTTTACTT
AATTCCCTATAACTTAAAATCTCCTCCATTTTCATAATCTTTAATTTACT
TAAACAAGTTAAATTTGTATCCTTACTTCTCCTTACTTATAAAAGGATAC
TTTAAAATGTCTATTAAAACAAACGATCTCTACACTCATCAAAAGTTTGC
ACATAAATTGTTAACAATTAAACTAACTTCACTCACCTTGCACTCACTAA
CCACTAACCTCATGAAGGAATTTTATGGAATGAAATACTTATGCCTAATT
ATTGGCATTGTTTAGGAATATGGGGCAGATCAATTGGACGAGGAAAACAA
CGTCACGTTGGAAAAATTATCGACACTTGTCGGAAATGGTGACGTCATTG
CTTCTGGTGGGGAGGAGGACGTTCAAGAAATTCACGTCGAATTCACGGAT
GACGAACTCGCTGATTCTGAAGGCAGCCAATCAGAAGACGAAAAACAACC
ACGTGACCGGCTGAATACCCAATTAGAAAAAAGTCGGGAGAGTGTGTTGG
ATAGTCTGGATGGTTTCACCAGGAACGATAGTACTGGTAGTCAGTTGAGT
GGATTTTCGGTCATGCAAACAGGCCCTGTGTACGAAAACGTTACTCAAGT
AGTCCCTGAAGAATTGAACATCCAATATGCGGACGATATATTTCGAAATT
GTGCTGCTCGCTATCAAATCTTTGTGGATAAAACACATGATTTCAAATCG
ACTGTAGATGCCTTCACAAACATGGTACCTTTACTGAAAGAAAACGCAGA
ATTGAAAGATTATTTCGAAGCTTATGGAAAGTTATTGGAGCAAGAAAGTG
AAAAAGATAATCAAGGTCAGATTCACCAAAAAGCTCTCTTTCGTAACTAG
AAGTTGATAAATGTCTTTTTAGATGAATTATCATCCATTGTTGTCAAGCT
CCTCAAAAATTAGTTTAGAGGCTAGTAACAGTAGAAACTTTAGTGAATAT
TGAGGTTAGTAatatgttgatattttttgtattGCTTTAGTTGAGATGTC
AGACGTGAACGTTTCGTTGCAAACTCTTCGCGCCAATGGAAACCAGCTCT
TAGATATCATCGATAATGTTCGGCCGCACGTAGATCGCTTGATCGATGAC
GCGTCCAACGTTGACGTCATCGAATACGTCAAAGGCAAGATGGTAGAAGG
TGTACAGTTGGGCATCACATCAAAGTTTTCGGCACCGGGTAAATATCGTC
GTAACATGAAGCATTTGCGAAAAGCTTTGTCCAACATTGATGCAGTTCAG
GAAGAagtaaaagctattttagaagatgatgtttttctcgatCGAAATGA
GTGTTCAGACAGTGATGAAGAAAGCGGGCCAACCACGCCGCCACAACCAC
CATCAGATAATGAATCCGATATCGTTCCCATGGTTCAACAGGAAGACATC
CCAACAAACGATATCTTCCACAAACTTGACAACATGTCTGTGGAAGAATC
TATTGAGTTGAGTGGAGAAACGAAGGTAATCATCCTTCCTTCGTCTCTTC
TCTTAATCTTAAAAATTGATCAGgagttaaggccggtctccacttgcgcg
cgctgcgatcgcattTTTTGGCTTCAGTGCTTTTTGCTTggataaaagat
tacgtcataaaaatatagtgcgcgctcgaaaaaaaagttgaacacatttc
aacttttttcaaccgttacgtcagatcgcgccaatggagttgcttcattt
ttcttttgaccaatagcgtggaagcttcgcccgaaaaagtgcgatcgaag
cgcgcgcaagtggagaccggcctttacccTCTTCAGCTTGAGCTCTTTCA
ATGGGTAATCCATTGATTTTATTATTCTAAATAAATGAGGGTTCATTAAC
ATAATTCTTAATCCCTAATGACTACTAACAACTAATCCACCTACAATTCT
GGAGGTCTCTAATAACAGTCACATTAAAATTCTCTTTAACACGCGTGAAT
TTTGCCTTTCtagtaatttttttcctgtaCTTGGTCggaatttcttaaaa
attggcaaaattggCGCGCATAAATAATCATCCATAATCATGCACGCTAC
AATATGCACGTTTTAAGTCTAAACAAGATTCTTTAAGATCTTGCATCTCA
ATATGACCACAGTTCAATCTATATAAAACTTTAACCACGTCATTTCACAA
TGTGCCCGAAAAAGCGAACAAATCTTTATATAAGGTAAATCCCCAAAACT
TGTTATCAAAACTGtgcttaaaataatttgaaagaagatTACGATTGTTG
TTCGATCTAAAGATATTCAATccccaagatgattgaataagTTTTTGAGA
TTTGAATATTAAGtatacaagtcataaaatttggcatgaagtatgaggat
tttactttacatAAAATTTGTCcgttttttgggacacactatGTATTTAT
AAACTTTAAAGCTTTTTACAATACCATTTTACTGAATTGAGTTATTATTT
TTCTCCTTCGCAGCCGGTGGATGGCAGTCAATCACCATCTTATGAACgta
aattgatgacgtcagacAACAAAAAGGCAAACATGACCCTGCTGGAACAA
TCTATCGAAGCTGAACGTCAAACTTCACTAGAACCGCAAACTATGACGTT
CGTTATCGAAAACATTCCGGAAAACGGTAAAAGTCCGGTCAACACCAGTA
CTCCGACCGATAAAAATGCAATCCAACAGATAATTGTGGAAGAAGAGGAG
CACAATACTTTGGACTTTGGTAAATACATATTGGTTGACCCGAACACAGG
AGATATTGCCGTGATGAGGAATCGTTCACGGAGTTTAGACAGCCTCGTTT
CAATACAATCTAATCGATCAAGTATCTCCAAGTTTGGCAGTTTTGAATTC
GTCACAGACTATGAATTGACAATCGCCGAGAAAAATCAACAattgaaaag
ttgatttttgagGAGGTATAGTTTTTAAATGGAATCAGTATGGAATTTTG
TATGTGAAACATATGCGATGTTTTTCGATAGTGGTGGTGGTGAGTGATTC
CACAATGAGAATTGGTGTCTAAATGAAACTTCAAATCTTCTTCAATATAA
AACTTGTTGAATGGAATGGGGGAAAGGGGCCGTCATATTTTAGAACTCTA
GTTCTTTATTTATCTTTGTATTAAATTTATTCTTTATATTTTCATCTCAA
AAGCATTTTTCATGCACCGTTCAAATGTTCACCATACTCACTCACTTTTC
AACGTGAATTCACAACACAAAACATTCCTCGAGGATTAaggtcggtctcc
acttgcgcgcgctgcaatcgcactttttggcttcaatcctttttgcttgg
aaaaaagattacgtcataaaaatgtagcgcgcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068777-exon-scaffold_49-1491911889:307376..307504 | TCONS_00068777-exon-scaffold_49-1491911889:307376..307504 | Clytia hemisphaerica | exon |
| TCONS_00068777-exon-scaffold_49-1510915933:307376..307504 | TCONS_00068777-exon-scaffold_49-1510915933:307376..307504 | Clytia hemisphaerica | exon |
| TCONS_00068777-exon-scaffold_49-1575043694:307376..307504 | TCONS_00068777-exon-scaffold_49-1575043694:307376..307504 | Clytia hemisphaerica | exon |
| TCONS_00068777-exon-scaffold_49-1491911889:307687..307929 | TCONS_00068777-exon-scaffold_49-1491911889:307687..307929 | Clytia hemisphaerica | exon |
| TCONS_00068777-exon-scaffold_49-1510915933:307687..307929 | TCONS_00068777-exon-scaffold_49-1510915933:307687..307929 | Clytia hemisphaerica | exon |
| TCONS_00068777-exon-scaffold_49-1575043694:307687..307929 | TCONS_00068777-exon-scaffold_49-1575043694:307687..307929 | Clytia hemisphaerica | exon |
| TCONS_00068777-exon-scaffold_49-1491911889:310589..311458 | TCONS_00068777-exon-scaffold_49-1491911889:310589..311458 | Clytia hemisphaerica | exon |
| TCONS_00068777-exon-scaffold_49-1510915933:310589..311458 | TCONS_00068777-exon-scaffold_49-1510915933:310589..311458 | Clytia hemisphaerica | exon |
| TCONS_00068777-exon-scaffold_49-1575043694:310589..311458 | TCONS_00068777-exon-scaffold_49-1575043694:310589..311458 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_49 | supercontig | scaffold_49:307376..311458 + |
Blast
The following BLAST results are available for this feature:
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