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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068772 ID=TCONS_00068772|Name=TCONS_00068772|organism=Clytia hemisphaerica|type=transcript|length=1678bp
aaatctttaacctccctagatttttaaaattacTATTCACAACATCTTAC
ACTGTAGGAATATAAAGTTTAACGGTGACGTAATAAAAACATGGTACACA
TATACGAAGATCGTCAAAATACAACGTATTGTAATATAAACACATGAAAG
GCCATGTTTTCATTGAAAGTCTTTATTTTTGAATCATCGAGGGTCCTTGT
TAGTTGCCATAACATAATACCTCTTCTCGAAACATAGCAAGTTGAATGGA
AAGCCAAGAAAAGCACTCAAGTAATTCCAACGCAACGAATAGTTTTTGGC
ANAACGAAGAGTGGAGCCAAACCTGATGTTCGCCTTGCTTTGATTGGCGC
ACCGAAAGTCGGGAAATCAGcaaTCAGTGTTCGATTTCTGACGCGAAGAT
TCATCCACGAATACCAGAGAAGCGTGGAACATACTTATCGTAGAAACCTG
GAGTTTGGAAATGAAGTCATTGAATATGTGTTAAGGGATTCATCAGGAAC
GGTCGAGAATAACAATAATTTGATCCACTGGGCGTCGTGTGTCGCAGTGA
TTTACTCCATCTCAGACAAGAACAGTTTCAATGTTGCATCTGCACTCCTC
GAAGAAATCAACTTCATTTACAACagtaaaaattacaaacaaaatggACC
AAAAAGTATCGGCCTTATTGGTAACAAGAAAGACTTAAACCATCTGCGGG
AAGTTTCCTTGAGAGAAGCTAAAGAATTGGCGAATAAACATGGCGCGAAT
TTCTGGGAAGTCTCCGCTTCTGATGATTTTCATTCAACTCATGCACCTTT
AAACTCCATGGTTGTTGAAGCttatttgaataatttgacATTGAAAACTG
TAAAAGGGGGACTGGTTTCTCCTGGATCACATGTGAAAGGTCTCGATGAA
AACATCAGAAACGAATTAATTTCGAATCAATCGATTGAAAGCGATGAAGG
TGGCTTACAACCATCTACACCATTCAAAATTCCCATGAATCCTTTCGACT
TTTCAAGCGAGAAACGAAAATCGTTTAAAGATCGCAAGAAATTAGATTTG
AAGTTAAACCAACTAAAAAGTGAAAGTCTAAAGAAGATCTCAATGGGAAG
GACTTCTTTGGATAACGACAACTTTGACTCCAATAACAATACAAATAGTA
ATTCACCAGATACTATGAGTCTGAGCACAGACAATGACGAACCAATTCGG
ACAAGTAGTTGGTCAAAGAAGGACAAAAAACGAAAGGAGAAATCGAAAGA
ATCAAAAGAACTGAAGGAActtaaagaaatgaaattaaCAGAAATGAATG
GAGTTGGACACGAAGaaatagaacaaaagaaaagtaattTACAAAGATGT
CACAGTCTCACTGACctcaaaagtttagaaaaagAACACCATTGCGAGGG
AGTTGATTCAGAAAACAAGGAAGACATTGAACCTCACGATGTAGAGGATG
ACAAACTAACTGATTTGATTTCACCTTCCAGTAAAATTACCAGCAGTTTC
AGCAGGTTGTCTTCATACTCTGCAGGCTCTGGCGTCCCCATTAAAAGTCC
ACGACCCCGCAAAGAGCGACGCAAAACCACTGGCTTGACCATGACTCCCG
AACATATAGAAACAGATCTCGCGTCCCCCCGAAGCCCCGAACCTCCTCGA
GAACAATCCAGATTCAAACGAGCCGAAA Run BLAST on NCBI transcript from alignment at scaffold_49:281488..284626+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068772 ID=TCONS_00068772|Name=TCONS_00068772|organism=Clytia hemisphaerica|type=transcript|length=3139bp|location=Sequence derived from alignment at scaffold_49:281488..284626+ (Clytia hemisphaerica)
aaatctttaacctccctagatttttaaaattacTATTCACAACATCTTAC
ACTGTAGGAATATAAAGTTTAACGGTGACGTAATAAAAACATGGTACACA
TATACGAAGATCGTCAAAATACAACGTATTGTAATATAAACACATGAAAG
GCCATGTTTTCATTGAAAGTCTTTATTTTTGAATCATCGAGGGTCCTTGT
TAGTTGCCATAACATAATACCTCTTCTCGAAACATAGCAAGTTGAATGGA
AAGCCAAGAAAAGCACTCAAGTAATTCCAACGCAACGAATAGTTTTTGGC
ANAACGAAGAGTGGAGCCAAACCTGATGTTCGCCTTGCTTTGATTGGCGC
ACCGAAAGTCGGGAAATCAGGTAAATAGATTTTTTAAGCAGGAACATTGA
GAATTCAAAGTTTACAGTCAAATCTTAAACCAGTTGATATCTAATAGTAC
AAGATTTCAAAACACCACGATATCGGACATTTAAGAGGCAAATTTCGCAG
AGAGAATATGATTCGAGTCGGCTAAAATTCAGAAGTCCTGGTCATAAAAG
ATCAACAACGCATCCAatttaaagaaatataaaaaaatctttaacctccc
tagatttttaaaattacTATTCACAACATCTTACACTGTAGGAATATAAA
GTTTAACGGTGACGTAATAAAAACATGGTACACATATACGAAGATCGTCA
AAATACAACGTATTGTAATATAAACACATGAAAGGCCATGTTTTCATTGA
AAGTCTTTATTTTTGAATCATCGAGGGTCCTTGTTAGTTGCCATAACATA
ATACCTCTTCTCGAAACATAGCAAGTTGAATGGAAAGCCAAGAAAGGCAC
TCAAGTAATTCCAACGCAACGAATAGTTTTTGGCAGCGTTACTTGCAATC
CATAATAAACGAACATGGAGTGAATTACCTACTGTAAAAGAAAAGGTTAA
AGTTGTAGGGTATCATCAAGGCCTAGCTAACCGTTCTGATAAATCAGGCT
TATAGGATTCATTGATTAATATTTCCGGGGCATATTCCTTCTCCctgtca
aaaaatgaaaattttcttttttagcaaTCAGTGTTCGATTTCTGACGCGA
AGATTCATCCACGAATACCAGAGAAGCGTGGAACATACTTATCGTAGAAA
CCTGGAGTTTGGAAATGAAGTCATTGAATATGTGTTAAGGGATTCATCAG
GAACGGTAAGACTTTGATGGAgtaatacacaggttgcaaaattaaaattc
tgaagacaaatcacgcttttactcgaaatttccatgtgcttgttacatga
catttatttctgattggttcgaatttattgacactaataaagtaaTTAAC
TGTTGTAATTAAAAGTTGTAAAGCAAgcaacatgggaataaaatcacggg
aactttttcgagtaatcacatgttttgactgcaccgatataattttgcaa
cctgtgtattgaaTATaaatgttttatcaaaataattttctatcCAATTT
TTTGTCGTGTTGAAACTGGAAGTATTTAAGTGACTTCCCACTTCTGATTT
AAAAGAGAATGAGACTTTTATCAAACGATTAAATGAGAGTTAAAGAACGT
TTACAAGCTTCTTAGTAAAACAAATTATGGACACAAAGAAGTCTGGTAAT
GAGCATGAGTCAGATTAGAAGATAAAAGAATCTCCGCCCTTGAACTTTAT
GAATCAGAGTGGTTTaggttttttgattttgtatggTTTTGAAATGAAGT
TAATTTTCAATTACCAAAGACTAGTCtgcacaatagacagctccaggctt
ttaggccttgtTTACCTTAGGAGAAGTTTTAcactcgaaacgaaggaaga
tgaCGTAGCCTACCAAAGACCCGCTAATCCAACATTTTAAATCCTTTCCT
TTTTTCCAGGTCGAGAATAACAATAATTTGATCCACTGGGCGTCGTGTGT
CGCAGTGATTTACTCCATCTCAGACAAGAACAGTTTCAATGTTGCATCTG
CACTCCTCGAAGAAATCAACTTCATTTACAACagtaaaaattacaaacaa
aatggACCAAAAAGTATCGGCCTTATTGGTAACAAGAAAGACTTAAACCA
TCTGCGGGAAGTTTCCTTGAGAGAAGCTAAAGAATTGGCGAATAAACATG
GCGCGAATTTCTGGGAAGTCTCCGCTTCTGATGATTTTCATTCAACTCAT
GCACCTTTAAACTCCATGGTTGTTGAAGCttatttgaataatttgacATT
GAAAACTGTAAAAGGGGGACTGGTTTCTCCTGGATCACATGTGAAAGGTC
TCGATGAAAACATCAGAAACGAATTAATTTCGAATCAATCGATTGAAAGC
GATGAAGGTGGCTTACAACCATCTACACCATTCAAAATTCCCATGAATCC
TTTCGACTTTTCAAGCGAGAAACGAAAATCGTTTAAAGATCGCAAGAAAT
TAGATTTGAAGTTAAACCAACTAAAAAGTGAAAGTCTAAAGAAGATCTCA
ATGGGAAGGACTTCTTTGGATAACGACAACTTTGACTCCAATAACAATAC
AAATAGTAATTCACCAGATACTATGAGTCTGAGCACAGACAATGACGAAC
CAATTCGGACAAGTAGTTGGTCAAAGAAGGACAAAAAACGAAAGGAGAAA
TCGAAAGAATCAAAAGAACTGAAGGAActtaaagaaatgaaattaaCAGA
AATGAATGGAGTTGGACACGAAGaaatagaacaaaagaaaagtaattTAC
AAAGATGTCACAGTCTCACTGACctcaaaagtttagaaaaagAACACCAT
TGCGAGGGAGTTGATTCAGAAAACAAGGAAGACATTGAACCTCACGATGT
AGAGNTGAGGGAGTTGATTCAGAGAACAAGGAAGACATTGAACCTCACGA
TGTAGAGGATGACAAACTAACTGATTTGATTTCACCTTCCAGTAAAATTA
CCAGCAGTTTCAGCAGGTTGTCTTCATACTCTGCAGGCTCTGGCGTCCCC
ATTAAAAGTCCACGACCCCGCAAAGAGCGACGCAAAACCACTGGCTTGAC
CATGACTCCCGAACATATAGAAACAGATCTCGCGTCCCCCCGAAGCCCCG
AACCTCCTCGAGAACAATCCAGATTCAAACGAGCCGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068772-exon-scaffold_49-1491911889:281488..281857 | TCONS_00068772-exon-scaffold_49-1491911889:281488..281857 | Clytia hemisphaerica | exon |
| TCONS_00068772-exon-scaffold_49-1510915933:281488..281857 | TCONS_00068772-exon-scaffold_49-1510915933:281488..281857 | Clytia hemisphaerica | exon |
| TCONS_00068772-exon-scaffold_49-1575043694:281488..281857 | TCONS_00068772-exon-scaffold_49-1575043694:281488..281857 | Clytia hemisphaerica | exon |
| TCONS_00068772-exon-scaffold_49-1491911889:282562..282692 | TCONS_00068772-exon-scaffold_49-1491911889:282562..282692 | Clytia hemisphaerica | exon |
| TCONS_00068772-exon-scaffold_49-1510915933:282562..282692 | TCONS_00068772-exon-scaffold_49-1510915933:282562..282692 | Clytia hemisphaerica | exon |
| TCONS_00068772-exon-scaffold_49-1575043694:282562..282692 | TCONS_00068772-exon-scaffold_49-1575043694:282562..282692 | Clytia hemisphaerica | exon |
| TCONS_00068772-exon-scaffold_49-1491911889:283397..284320 | TCONS_00068772-exon-scaffold_49-1491911889:283397..284320 | Clytia hemisphaerica | exon |
| TCONS_00068772-exon-scaffold_49-1510915933:283397..284320 | TCONS_00068772-exon-scaffold_49-1510915933:283397..284320 | Clytia hemisphaerica | exon |
| TCONS_00068772-exon-scaffold_49-1575043694:283397..284320 | TCONS_00068772-exon-scaffold_49-1575043694:283397..284320 | Clytia hemisphaerica | exon |
| TCONS_00068772-exon-scaffold_49-1491911889:284374..284626 | TCONS_00068772-exon-scaffold_49-1491911889:284374..284626 | Clytia hemisphaerica | exon |
| TCONS_00068772-exon-scaffold_49-1510915933:284374..284626 | TCONS_00068772-exon-scaffold_49-1510915933:284374..284626 | Clytia hemisphaerica | exon |
| TCONS_00068772-exon-scaffold_49-1575043694:284374..284626 | TCONS_00068772-exon-scaffold_49-1575043694:284374..284626 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_49 | supercontig | scaffold_49:281488..284626 + |
Blast
BLAST of TCONS_00068772 vs. Swiss-Prot (Human)
Match: RERG (Ras-related and estrogen-regulated growth inhibitor OS=Homo sapiens GN=RERG PE=1 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 4.279e-23 Identity = 55/153 (35.95%), Postives = 86/153 (56.21%), Query Frame = 1
Query: 322 PDVRLALIGAPKVGKSAISVRFLTRRFIHEYQRSVEHTYRRNLEFGNEVIEYVLRDSSG---TVENNNNLIHWASCVAVIYSISDKNSFNVASALLEEINFIYNSKNYKQNGPKSIGLIGNKKDLNHLREVSLREAKELANKHGANFWEVSAS 771
+V+LA+ G VGKSA+ VRFLT+RFI EY ++E TYR +EV+ + D++G T++ ++ W ++Y I+D+ SF L ++ I KN ++ L+GNK DL+H R+VS E ++LA + F+E SA
Sbjct: 5 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTIQREGHM-RWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNV------TLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSAC 150
The following BLAST results are available for this feature:
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