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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068574 ID=TCONS_00068574|Name=TCONS_00068574|organism=Clytia hemisphaerica|type=transcript|length=1704bp TCCCATTCATTATTAACTCGATCAACGATGAGATCGTCGACATTCATAAT TGTTCATTCACTGACAACACTTTCCGATCAAGCATTTCAGTTTATGGAAC TGATAAAGAAGTTACTATAAACCATGCCTCGTTTTACGGTAACAAGATAA AAGGTCTTGGTAGCCTGATAGAGATAAACGACTTGAGTGCGACAACCATG TTAATTATTGATAATATCTATGCAATACGATTGAAAAGATTTGGGGACGA CAACAACATTGTCGAAAGCGCTTTGCTTCATATATCAAAAACAAGACGTA ACCGGTACAATTCCAATGAATATTGGAGTCTGCGCAAAAAAGGGTATACA ATGGATCGAGAAATCACTACAATCAATAATGTAACGATCGTCTGCCTGTC CGGAAAAATATCAACTCTGAACGTAataaaaaagcagaaaaatacTGGGT TTATAGACCTAATTTCAACTTTAACATGCAGTCCTTGTCCGTCTGGAACT ATTTATTTACTGTCTGGTTCCAAAGCCAGCTCTAGTCTATCATCAGTGGA ATCTTACCCATTTATCTTTGACGATGAGACTTTCAATAATGGGGTTGTCG ATGAATATTGTAGCAAATGTCCTTTTGGTGCTGTTTGCACTTCTGGAGTC CTTAAAAGTCAAGATAATTTTTATGGATTCGAGAAGCCTGACGGTACGGT TAATTTCGAACCATGCCCCGATGGATATTGTTGCTCGAATGATACCAAGA TTTGTACTACTACAAAATCGTGTGGCAGTAACAGGATTGGAAGGTTCTGT GGTCGATGTCGAGATGAATATTTCATTAAATACTTTTCCAATGACTGTTC ACCAAATTTTGAGTGCAAAAAGAAACAGCAATTTTCATTTTGGCTCTATT ACTTTGGAACGATAACACTGACCTTTCATATAATATTCTTTGCTAAAGAT CTAAAAGCGATGTTGAAAACACTCATCATATGGCTCTACAGAACCAAATG CTCTACCAAGCCAAATCGTAAAACCCAAACAGAAAACGAAGAAATAATCG AAGAGCCAgagaagaaagagaagaaagatCAGGAGAAAGATCAGGAGAAT GACGAGGTGAATGAAGATGAAGAGAATGAAGCAGAAAACGAAGAAATGGA CAAAGAAGCATCTTTCACATTTTCCGCTATTTTCGGTATTCTCATCTCAT TTTACCAGTTAAAGTCTATACTCTCCGTAAGATCGAATCCGTCTACCGGA ATATCGTTCATCGAGAGCTTCATGAACATTGACTTAATTCAATCCTTAAT CAGTCAAGGATCTCTTCTTTGCCTTACACGTAATCTGACTGTCGTGCTAC GGGAATTGGTTAAAGGTTATCTTTCTACTGCACTGATGTTATCGAACCTT CTCATTACATCTTTCATATTCGCAATTACTTCACATTTATTTCCTCGTAA GTCATATAATATCCTATCTTGTCATGTCGGATTGTATATTATTCTGACGT TTAATTACAAAAACATCTCCAGAACAGCTTTGAATTTGATCAACTGTATA ACACGAGAAGAAGTGACATTTCTCTACCTTGATGGGGAAATCGAATGTTA CCAGAATTGGCAGATCGCAAAcatagttcggaagggggtcactacccccc ctaccctagagctaccccccctaccctaggttcttcccccttttaaaatt tgat Run BLAST on NCBI protein sequence of TCONS_00068574-protein >TCONS_00068574-protein ID=TCONS_00068574-protein|Name=TCONS_00068574-protein|organism=Clytia hemisphaerica|type=polypeptide|length=558bp
PFIINSINDEIVDIHNCSFTDNTFRSSISVYGTDKEVTINHASFYGNKIK GLGSLIEINDLSATTMLIIDNIYAIRLKRFGDDNNIVESALLHISKTRRN RYNSNEYWSLRKKGYTMDREITTINNVTIVCLSGKISTLNVIKKQKNTGF IDLISTLTCSPCPSGTIYLLSGSKASSSLSSVESYPFIFDDETFNNGVVD EYCSKCPFGAVCTSGVLKSQDNFYGFEKPDGTVNFEPCPDGYCCSNDTKI CTTTKSCGSNRIGRFCGRCRDEYFIKYFSNDCSPNFECKKKQQFSFWLYY FGTITLTFHIIFFAKDLKAMLKTLIIWLYRTKCSTKPNRKTQTENEEIIE EPEKKEKKDQEKDQENDEVNEDEENEAENEEMDKEASFTFSAIFGILISF YQLKSILSVRSNPSTGISFIESFMNIDLIQSLISQGSLLCLTRNLTVVLR ELVKGYLSTALMLSNLLITSFIFAITSHLFPRKSYNILSCHVGLYIILTF NYKNISRTALNLINCITREEVTFLYLDGEIECYQNWQIANIVRKGVTTPP TLELPPLP Run BLAST on NCBI transcript from alignment at scaffold_485:329026..330729 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068574 ID=TCONS_00068574|Name=TCONS_00068574|organism=Clytia hemisphaerica|type=transcript|length=1704bp|location=Sequence derived from alignment at scaffold_485:329026..330729 (Clytia hemisphaerica) atcaaattttaaaagggggaagaacctagggtagggggggtagctctagg
gtagggggggtagtgacccccttccgaactatgTTTGCGATCTGCCAATT
CTGGTAACATTCGATTTCCCCATCAAGGTAGAGAAATGTCACTTCTTCTC
GTGTTATACAGTTGATCAAATTCAAAGCTGTTCTGGAGATGTTTTTGTAA
TTAAACGTCAGAATAATATACAATCCGACATGACAAGATAGGATATTATA
TGACTTACGAGGAAATAAATGTGAAGTAATTGCGAATATGAAAGATGTAA
TGAGAAGGTTCGATAACATCAGTGCAGTAGAAAGATAACCTTTAACCAAT
TCCCGTAGCACGACAGTCAGATTACGTGTAAGGCAAAGAAGAGATCCTTG
ACTGATTAAGGATTGAATTAAGTCAATGTTCATGAAGCTCTCGATGAACG
ATATTCCGGTAGACGGATTCGATCTTACGGAGAGTATAGACTTTAACTGG
TAAAATGAGATGAGAATACCGAAAATAGCGGAAAATGTGAAAGATGCTTC
TTTGTCCATTTCTTCGTTTTCTGCTTCATTCTCTTCATCTTCATTCACCT
CGTCATTCTCCTGATCTTTCTCCTGatctttcttctctttcttctcTGGC
TCTTCGATTATTTCTTCGTTTTCTGTTTGGGTTTTACGATTTGGCTTGGT
AGAGCATTTGGTTCTGTAGAGCCATATGATGAGTGTTTTCAACATCGCTT
TTAGATCTTTAGCAAAGAATATTATATGAAAGGTCAGTGTTATCGTTCCA
AAGTAATAGAGCCAAAATGAAAATTGCTGTTTCTTTTTGCACTCAAAATT
TGGTGAACAGTCATTGGAAAAGTATTTAATGAAATATTCATCTCGACATC
GACCACAGAACCTTCCAATCCTGTTACTGCCACACGATTTTGTAGTAGTA
CAAATCTTGGTATCATTCGAGCAACAATATCCATCGGGGCATGGTTCGAA
ATTAACCGTACCGTCAGGCTTCTCGAATCCATAAAAATTATCTTGACTTT
TAAGGACTCCAGAAGTGCAAACAGCACCAAAAGGACATTTGCTACAATAT
TCATCGACAACCCCATTATTGAAAGTCTCATCGTCAAAGATAAATGGGTA
AGATTCCACTGATGATAGACTAGAGCTGGCTTTGGAACCAGACAGTAAAT
AAATAGTTCCAGACGGACAAGGACTGCATGTTAAAGTTGAAATTAGGTCT
ATAAACCCAgtatttttctgcttttttatTACGTTCAGAGTTGATATTTT
TCCGGACAGGCAGACGATCGTTACATTATTGATTGTAGTGATTTCTCGAT
CCATTGTATACCCTTTTTTGCGCAGACTCCAATATTCATTGGAATTGTAC
CGGTTACGTCTTGTTTTTGATATATGAAGCAAAGCGCTTTCGACAATGTT
GTTGTCGTCCCCAAATCTTTTCAATCGTATTGCATAGATATTATCAATAA
TTAACATGGTTGTCGCACTCAAGTCGTTTATCTCTATCAGGCTACCAAGA
CCTTTTATCTTGTTACCGTAAAACGAGGCATGGTTTATAGTAACTTCTTT
ATCAGTTCCATAAACTGAAATGCTTGATCGGAAAGTGTTGTCAGTGAATG
AACAATTATGAATGTCGACGATCTCATCGTTGATCGAGTTAATAATGAAT
GGGA Coding sequence (CDS) from alignment at scaffold_485:329026..330729 >TCONS_00068574 ID=TCONS_00068574|Name=TCONS_00068574|organism=Clytia hemisphaerica|type=CDS|length=1677bp|location=Sequence derived from alignment at scaffold_485:329026..330729 (Clytia hemisphaerica) ctagggtagggggggtagctctagggtagggggggtagtgacccccttcc gaactatgTTTGCGATCTGCCAATTCTGGTAACATTCGATTTCCCCATCA AGGTAGAGAAATGTCACTTCTTCTCGTGTTATACAGTTGATCAAATTCAA AGCTGTTCTGGAGATGTTTTTGTAATTAAACGTCAGAATAATATACAATC CGACATGACAAGATAGGATATTATATGACTTACGAGGAAATAAATGTGAA GTAATTGCGAATATGAAAGATGTAATGAGAAGGTTCGATAACATCAGTGC AGTAGAAAGATAACCTTTAACCAATTCCCGTAGCACGACAGTCAGATTAC GTGTAAGGCAAAGAAGAGATCCTTGACTGATTAAGGATTGAATTAAGTCA ATGTTCATGAAGCTCTCGATGAACGATATTCCGGTAGACGGATTCGATCT TACGGAGAGTATAGACTTTAACTGGTAAAATGAGATGAGAATACCGAAAA TAGCGGAAAATGTGAAAGATGCTTCTTTGTCCATTTCTTCGTTTTCTGCT TCATTCTCTTCATCTTCATTCACCTCGTCATTCTCCTGATCTTTCTCCTG atctttcttctctttcttctcTGGCTCTTCGATTATTTCTTCGTTTTCTG TTTGGGTTTTACGATTTGGCTTGGTAGAGCATTTGGTTCTGTAGAGCCAT ATGATGAGTGTTTTCAACATCGCTTTTAGATCTTTAGCAAAGAATATTAT ATGAAAGGTCAGTGTTATCGTTCCAAAGTAATAGAGCCAAAATGAAAATT GCTGTTTCTTTTTGCACTCAAAATTTGGTGAACAGTCATTGGAAAAGTAT TTAATGAAATATTCATCTCGACATCGACCACAGAACCTTCCAATCCTGTT ACTGCCACACGATTTTGTAGTAGTACAAATCTTGGTATCATTCGAGCAAC AATATCCATCGGGGCATGGTTCGAAATTAACCGTACCGTCAGGCTTCTCG AATCCATAAAAATTATCTTGACTTTTAAGGACTCCAGAAGTGCAAACAGC ACCAAAAGGACATTTGCTACAATATTCATCGACAACCCCATTATTGAAAG TCTCATCGTCAAAGATAAATGGGTAAGATTCCACTGATGATAGACTAGAG CTGGCTTTGGAACCAGACAGTAAATAAATAGTTCCAGACGGACAAGGACT GCATGTTAAAGTTGAAATTAGGTCTATAAACCCAgtatttttctgctttt ttatTACGTTCAGAGTTGATATTTTTCCGGACAGGCAGACGATCGTTACA TTATTGATTGTAGTGATTTCTCGATCCATTGTATACCCTTTTTTGCGCAG ACTCCAATATTCATTGGAATTGTACCGGTTACGTCTTGTTTTTGATATAT GAAGCAAAGCGCTTTCGACAATGTTGTTGTCGTCCCCAAATCTTTTCAAT CGTATTGCATAGATATTATCAATAATTAACATGGTTGTCGCACTCAAGTC GTTTATCTCTATCAGGCTACCAAGACCTTTTATCTTGTTACCGTAAAACG AGGCATGGTTTATAGTAACTTCTTTATCAGTTCCATAAACTGAAATGCTT GATCGGAAAGTGTTGTCAGTGAATGAACAATTATGAATGTCGACGATCTC ATCGTTGATCGAGTTAATAATGAATGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00068574-exon-scaffold_485-1491911889:329026..330729 | TCONS_00068574-exon-scaffold_485-1491911889:329026..330729 | Clytia hemisphaerica | exon |
TCONS_00068574-exon-scaffold_485-1510915933:329026..330729 | TCONS_00068574-exon-scaffold_485-1510915933:329026..330729 | Clytia hemisphaerica | exon |
TCONS_00068574-exon-scaffold_485-1575043694:329026..330729 | TCONS_00068574-exon-scaffold_485-1575043694:329026..330729 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_485 | supercontig | scaffold_485:329026..330729 . |
Blast
The following BLAST results are available for this feature:
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