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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068574 ID=TCONS_00068574|Name=TCONS_00068574|organism=Clytia hemisphaerica|type=transcript|length=1704bp
TCCCATTCATTATTAACTCGATCAACGATGAGATCGTCGACATTCATAAT
TGTTCATTCACTGACAACACTTTCCGATCAAGCATTTCAGTTTATGGAAC
TGATAAAGAAGTTACTATAAACCATGCCTCGTTTTACGGTAACAAGATAA
AAGGTCTTGGTAGCCTGATAGAGATAAACGACTTGAGTGCGACAACCATG
TTAATTATTGATAATATCTATGCAATACGATTGAAAAGATTTGGGGACGA
CAACAACATTGTCGAAAGCGCTTTGCTTCATATATCAAAAACAAGACGTA
ACCGGTACAATTCCAATGAATATTGGAGTCTGCGCAAAAAAGGGTATACA
ATGGATCGAGAAATCACTACAATCAATAATGTAACGATCGTCTGCCTGTC
CGGAAAAATATCAACTCTGAACGTAataaaaaagcagaaaaatacTGGGT
TTATAGACCTAATTTCAACTTTAACATGCAGTCCTTGTCCGTCTGGAACT
ATTTATTTACTGTCTGGTTCCAAAGCCAGCTCTAGTCTATCATCAGTGGA
ATCTTACCCATTTATCTTTGACGATGAGACTTTCAATAATGGGGTTGTCG
ATGAATATTGTAGCAAATGTCCTTTTGGTGCTGTTTGCACTTCTGGAGTC
CTTAAAAGTCAAGATAATTTTTATGGATTCGAGAAGCCTGACGGTACGGT
TAATTTCGAACCATGCCCCGATGGATATTGTTGCTCGAATGATACCAAGA
TTTGTACTACTACAAAATCGTGTGGCAGTAACAGGATTGGAAGGTTCTGT
GGTCGATGTCGAGATGAATATTTCATTAAATACTTTTCCAATGACTGTTC
ACCAAATTTTGAGTGCAAAAAGAAACAGCAATTTTCATTTTGGCTCTATT
ACTTTGGAACGATAACACTGACCTTTCATATAATATTCTTTGCTAAAGAT
CTAAAAGCGATGTTGAAAACACTCATCATATGGCTCTACAGAACCAAATG
CTCTACCAAGCCAAATCGTAAAACCCAAACAGAAAACGAAGAAATAATCG
AAGAGCCAgagaagaaagagaagaaagatCAGGAGAAAGATCAGGAGAAT
GACGAGGTGAATGAAGATGAAGAGAATGAAGCAGAAAACGAAGAAATGGA
CAAAGAAGCATCTTTCACATTTTCCGCTATTTTCGGTATTCTCATCTCAT
TTTACCAGTTAAAGTCTATACTCTCCGTAAGATCGAATCCGTCTACCGGA
ATATCGTTCATCGAGAGCTTCATGAACATTGACTTAATTCAATCCTTAAT
CAGTCAAGGATCTCTTCTTTGCCTTACACGTAATCTGACTGTCGTGCTAC
GGGAATTGGTTAAAGGTTATCTTTCTACTGCACTGATGTTATCGAACCTT
CTCATTACATCTTTCATATTCGCAATTACTTCACATTTATTTCCTCGTAA
GTCATATAATATCCTATCTTGTCATGTCGGATTGTATATTATTCTGACGT
TTAATTACAAAAACATCTCCAGAACAGCTTTGAATTTGATCAACTGTATA
ACACGAGAAGAAGTGACATTTCTCTACCTTGATGGGGAAATCGAATGTTA
CCAGAATTGGCAGATCGCAAAcatagttcggaagggggtcactacccccc
ctaccctagagctaccccccctaccctaggttcttcccccttttaaaatt
tgat Run BLAST on NCBI protein sequence of TCONS_00068574-protein >TCONS_00068574-protein ID=TCONS_00068574-protein|Name=TCONS_00068574-protein|organism=Clytia hemisphaerica|type=polypeptide|length=558bp
PFIINSINDEIVDIHNCSFTDNTFRSSISVYGTDKEVTINHASFYGNKIK
GLGSLIEINDLSATTMLIIDNIYAIRLKRFGDDNNIVESALLHISKTRRN
RYNSNEYWSLRKKGYTMDREITTINNVTIVCLSGKISTLNVIKKQKNTGF
IDLISTLTCSPCPSGTIYLLSGSKASSSLSSVESYPFIFDDETFNNGVVD
EYCSKCPFGAVCTSGVLKSQDNFYGFEKPDGTVNFEPCPDGYCCSNDTKI
CTTTKSCGSNRIGRFCGRCRDEYFIKYFSNDCSPNFECKKKQQFSFWLYY
FGTITLTFHIIFFAKDLKAMLKTLIIWLYRTKCSTKPNRKTQTENEEIIE
EPEKKEKKDQEKDQENDEVNEDEENEAENEEMDKEASFTFSAIFGILISF
YQLKSILSVRSNPSTGISFIESFMNIDLIQSLISQGSLLCLTRNLTVVLR
ELVKGYLSTALMLSNLLITSFIFAITSHLFPRKSYNILSCHVGLYIILTF
NYKNISRTALNLINCITREEVTFLYLDGEIECYQNWQIANIVRKGVTTPP
TLELPPLP Run BLAST on NCBI transcript from alignment at scaffold_485:329026..330729 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068574 ID=TCONS_00068574|Name=TCONS_00068574|organism=Clytia hemisphaerica|type=transcript|length=1704bp|location=Sequence derived from alignment at scaffold_485:329026..330729 (Clytia hemisphaerica)
atcaaattttaaaagggggaagaacctagggtagggggggtagctctagg
gtagggggggtagtgacccccttccgaactatgTTTGCGATCTGCCAATT
CTGGTAACATTCGATTTCCCCATCAAGGTAGAGAAATGTCACTTCTTCTC
GTGTTATACAGTTGATCAAATTCAAAGCTGTTCTGGAGATGTTTTTGTAA
TTAAACGTCAGAATAATATACAATCCGACATGACAAGATAGGATATTATA
TGACTTACGAGGAAATAAATGTGAAGTAATTGCGAATATGAAAGATGTAA
TGAGAAGGTTCGATAACATCAGTGCAGTAGAAAGATAACCTTTAACCAAT
TCCCGTAGCACGACAGTCAGATTACGTGTAAGGCAAAGAAGAGATCCTTG
ACTGATTAAGGATTGAATTAAGTCAATGTTCATGAAGCTCTCGATGAACG
ATATTCCGGTAGACGGATTCGATCTTACGGAGAGTATAGACTTTAACTGG
TAAAATGAGATGAGAATACCGAAAATAGCGGAAAATGTGAAAGATGCTTC
TTTGTCCATTTCTTCGTTTTCTGCTTCATTCTCTTCATCTTCATTCACCT
CGTCATTCTCCTGATCTTTCTCCTGatctttcttctctttcttctcTGGC
TCTTCGATTATTTCTTCGTTTTCTGTTTGGGTTTTACGATTTGGCTTGGT
AGAGCATTTGGTTCTGTAGAGCCATATGATGAGTGTTTTCAACATCGCTT
TTAGATCTTTAGCAAAGAATATTATATGAAAGGTCAGTGTTATCGTTCCA
AAGTAATAGAGCCAAAATGAAAATTGCTGTTTCTTTTTGCACTCAAAATT
TGGTGAACAGTCATTGGAAAAGTATTTAATGAAATATTCATCTCGACATC
GACCACAGAACCTTCCAATCCTGTTACTGCCACACGATTTTGTAGTAGTA
CAAATCTTGGTATCATTCGAGCAACAATATCCATCGGGGCATGGTTCGAA
ATTAACCGTACCGTCAGGCTTCTCGAATCCATAAAAATTATCTTGACTTT
TAAGGACTCCAGAAGTGCAAACAGCACCAAAAGGACATTTGCTACAATAT
TCATCGACAACCCCATTATTGAAAGTCTCATCGTCAAAGATAAATGGGTA
AGATTCCACTGATGATAGACTAGAGCTGGCTTTGGAACCAGACAGTAAAT
AAATAGTTCCAGACGGACAAGGACTGCATGTTAAAGTTGAAATTAGGTCT
ATAAACCCAgtatttttctgcttttttatTACGTTCAGAGTTGATATTTT
TCCGGACAGGCAGACGATCGTTACATTATTGATTGTAGTGATTTCTCGAT
CCATTGTATACCCTTTTTTGCGCAGACTCCAATATTCATTGGAATTGTAC
CGGTTACGTCTTGTTTTTGATATATGAAGCAAAGCGCTTTCGACAATGTT
GTTGTCGTCCCCAAATCTTTTCAATCGTATTGCATAGATATTATCAATAA
TTAACATGGTTGTCGCACTCAAGTCGTTTATCTCTATCAGGCTACCAAGA
CCTTTTATCTTGTTACCGTAAAACGAGGCATGGTTTATAGTAACTTCTTT
ATCAGTTCCATAAACTGAAATGCTTGATCGGAAAGTGTTGTCAGTGAATG
AACAATTATGAATGTCGACGATCTCATCGTTGATCGAGTTAATAATGAAT
GGGA Coding sequence (CDS) from alignment at scaffold_485:329026..330729 >TCONS_00068574 ID=TCONS_00068574|Name=TCONS_00068574|organism=Clytia hemisphaerica|type=CDS|length=1677bp|location=Sequence derived from alignment at scaffold_485:329026..330729 (Clytia hemisphaerica)
ctagggtagggggggtagctctagggtagggggggtagtgacccccttcc
gaactatgTTTGCGATCTGCCAATTCTGGTAACATTCGATTTCCCCATCA
AGGTAGAGAAATGTCACTTCTTCTCGTGTTATACAGTTGATCAAATTCAA
AGCTGTTCTGGAGATGTTTTTGTAATTAAACGTCAGAATAATATACAATC
CGACATGACAAGATAGGATATTATATGACTTACGAGGAAATAAATGTGAA
GTAATTGCGAATATGAAAGATGTAATGAGAAGGTTCGATAACATCAGTGC
AGTAGAAAGATAACCTTTAACCAATTCCCGTAGCACGACAGTCAGATTAC
GTGTAAGGCAAAGAAGAGATCCTTGACTGATTAAGGATTGAATTAAGTCA
ATGTTCATGAAGCTCTCGATGAACGATATTCCGGTAGACGGATTCGATCT
TACGGAGAGTATAGACTTTAACTGGTAAAATGAGATGAGAATACCGAAAA
TAGCGGAAAATGTGAAAGATGCTTCTTTGTCCATTTCTTCGTTTTCTGCT
TCATTCTCTTCATCTTCATTCACCTCGTCATTCTCCTGATCTTTCTCCTG
atctttcttctctttcttctcTGGCTCTTCGATTATTTCTTCGTTTTCTG
TTTGGGTTTTACGATTTGGCTTGGTAGAGCATTTGGTTCTGTAGAGCCAT
ATGATGAGTGTTTTCAACATCGCTTTTAGATCTTTAGCAAAGAATATTAT
ATGAAAGGTCAGTGTTATCGTTCCAAAGTAATAGAGCCAAAATGAAAATT
GCTGTTTCTTTTTGCACTCAAAATTTGGTGAACAGTCATTGGAAAAGTAT
TTAATGAAATATTCATCTCGACATCGACCACAGAACCTTCCAATCCTGTT
ACTGCCACACGATTTTGTAGTAGTACAAATCTTGGTATCATTCGAGCAAC
AATATCCATCGGGGCATGGTTCGAAATTAACCGTACCGTCAGGCTTCTCG
AATCCATAAAAATTATCTTGACTTTTAAGGACTCCAGAAGTGCAAACAGC
ACCAAAAGGACATTTGCTACAATATTCATCGACAACCCCATTATTGAAAG
TCTCATCGTCAAAGATAAATGGGTAAGATTCCACTGATGATAGACTAGAG
CTGGCTTTGGAACCAGACAGTAAATAAATAGTTCCAGACGGACAAGGACT
GCATGTTAAAGTTGAAATTAGGTCTATAAACCCAgtatttttctgctttt
ttatTACGTTCAGAGTTGATATTTTTCCGGACAGGCAGACGATCGTTACA
TTATTGATTGTAGTGATTTCTCGATCCATTGTATACCCTTTTTTGCGCAG
ACTCCAATATTCATTGGAATTGTACCGGTTACGTCTTGTTTTTGATATAT
GAAGCAAAGCGCTTTCGACAATGTTGTTGTCGTCCCCAAATCTTTTCAAT
CGTATTGCATAGATATTATCAATAATTAACATGGTTGTCGCACTCAAGTC
GTTTATCTCTATCAGGCTACCAAGACCTTTTATCTTGTTACCGTAAAACG
AGGCATGGTTTATAGTAACTTCTTTATCAGTTCCATAAACTGAAATGCTT
GATCGGAAAGTGTTGTCAGTGAATGAACAATTATGAATGTCGACGATCTC
ATCGTTGATCGAGTTAATAATGAATGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068574-exon-scaffold_485-1491911889:329026..330729 | TCONS_00068574-exon-scaffold_485-1491911889:329026..330729 | Clytia hemisphaerica | exon |
| TCONS_00068574-exon-scaffold_485-1510915933:329026..330729 | TCONS_00068574-exon-scaffold_485-1510915933:329026..330729 | Clytia hemisphaerica | exon |
| TCONS_00068574-exon-scaffold_485-1575043694:329026..330729 | TCONS_00068574-exon-scaffold_485-1575043694:329026..330729 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_485 | supercontig | scaffold_485:329026..330729 . |
Blast
The following BLAST results are available for this feature:
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