TCONS_00068500 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068500
Unique NameTCONS_00068500
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1321

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068500 ID=TCONS_00068500|Name=TCONS_00068500|organism=Clytia hemisphaerica|type=transcript|length=1321bp
TTAGTAAGAATCATTTTTATCAGGCCTATGGATTTAGCCTCCGACACCAC
CGAATTTCTTGTCTATCATCATTAGCCTTCCAttctttggattttttctt
ccatATTCTTGAAGTTTTTGTTTCTCTGTTGAATTATTTTGTAATGGTAT
ATAACAGGAGAGGGTGAGTGCTTGCCATGTTGACCCTTTTCGCCTACTTC
TACATGGATGGCTTTAGCCACAACATTAGAagatttcttgttttcaaaaa
gCCCACCACCAGACACACAAACACTGGAACAGCACCAAGCCGATGAACAA
ATTGATGTCAATATTCTCAAGTTGATACGCCAAGAAATCCTCCCCAACTC
GACAAGTCTGCCACAAGAATTTGTCGACACTTTGATGAAATTGCTGAATC
GTGGATCTAGTCATACGACCAGTACTACCATGTTTGATAatgttTGGGAA
ATTTTGCGCCAaaagaaattcgcgaaattcgaAGAAATTGTCCACCAAAA
ACCGAACATCGTCAACTCGTTGCGTGATGGTGATGGTTGGACACTTCTCG
TGTGGGCTGTTTTGAATGATCGTTTCGACGTTTTCGTTCACTTGATGGAA
TATCCTCAGGATTTTTCACTCGTGAGCAATGTCGATGGATGGAACATTCT
TCATTATGTTGGTCGTCATGGAACAGTTCgttatttggaaaaatttggtc
AACAAACAATCGAAATATTGATCAATGGCAGAAACAAACAGAACAACACA
CCATTGCATTTTGCAGCACGTCGCaacaatcatgacgtcatcagatggtT
GTTGGCCAAAGGAGCGGATCATgaagagaaaaatgaagatggtCGACGCC
CTGATGAACGTTGTGATGGTTGTGATGGTGTTACCAAAGAAATCATTCAA
TCGTTTCTTGATTGATTGTTTGTTTCCATTGTTTGTTTCGTCGtttccaa
tgacgtcatcggttccAAATTATTTCCACattCCACGCTTGAGAAGTTAC
ACCAGTCATTTTTGACGCCGTTTCTATGATTACGTTATTCATTCACTCCG
TCTCTACAGTTCTGTTTGCGTTCAAATATTTCTGCCTtaattttggcttg
tttttaaaTGTATTTTCACCACGTCACTAACCTGACAATTATTACGAACA
CTGTGTCGTCAAACCAGAAAATTGTCGTTTCACTTAATTTTCTGAATATA
AACGAGATTCAAGGATCTATTACTAAAATAGCAAGTTTTTCGgagtaaat
tttcaatttgttcaATTGATTCCTAAGAATCGATGAGAGTCGAGAAAGGc
taggaaaaaacaaaaaagagc
Run BLAST on NCBI

protein sequence of TCONS_00068500-protein

>TCONS_00068500-protein ID=TCONS_00068500-protein|Name=TCONS_00068500-protein|organism=Clytia hemisphaerica|type=polypeptide|length=235bp
MALATTLEDFLFSKSPPPDTQTLEQHQADEQIDVNILKLIRQEILPNSTS
LPQEFVDTLMKLLNRGSSHTTSTTMFDNVWEILRQKKFAKFEEIVHQKPN
IVNSLRDGDGWTLLVWAVLNDRFDVFVHLMEYPQDFSLVSNVDGWNILHY
VGRHGTVRYLEKFGQQTIEILINGRNKQNNTPLHFAARRNNHDVIRWLLA
KGADHEEKNEDGRRPDERCDGCDGVTKEIIQSFLD
Run BLAST on NCBI

transcript from alignment at scaffold_485:399654..412367+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068500 ID=TCONS_00068500|Name=TCONS_00068500|organism=Clytia hemisphaerica|type=transcript|length=12714bp|location=Sequence derived from alignment at scaffold_485:399654..412367+ (Clytia hemisphaerica)
TTAGTAAGAATCATTTTTATCAGGCCTATGGATTTAGCCTCCGACACCAC
CGAATTTCTTGTCTATCATCATTAGCCTTCCAttctttggattttttctt
ccatATTCTTGAAGTTTTTGTTTCTCTGTTGAATTATTTTGTAATGGTAT
ATAACAGGAGAGGGTGAGTGCTTGCCATGTTGACCCTTTTCGCCTACTTC
TACATGGATGGCTTTAGCCACAACATTAGAagatttcttgttttcaaaaa
ggtaTATATTTTTCTAAGAACGAAAAGCATAGAGAACATTATAACAATGC
AAAATTCCCCCGGGGAAaacatgtgacgtcataatgatAACAAGTAGAAG
AATCCGATAACTAGCCATGCTCAAATCTAATAACTTCATCCTTGTATCTA
TTGTGAGCGCCAAGGTTGATGGTAATCCTGTCTGGTGTTTATCCTTCAGT
GCAATGGCTGGCTGTTAataaaattgctatttttgccTGAATCAGCCCTA
GGATACTGCCTCTAGAGATTGGAAAATACTATTGTATTAGCTTGAAATTA
TGACGATTATTATTTATTGTTAACACAAGCTTGTAGCCATAATTTCGGCA
AAATCGGACGAGCggttatgctgaaagtgagcattttggGTAAaatacag
accggtctgtaaaatgcCAACCGCTCAAGtgactaaattgaaattttgtg
aagttGAAAAATGTCTTTGATGAAgtttgtctgttaccagcttttctcaa
gattaactgattagtttttctgattttttgtatattgatgcaaaatggca
gtACCGAAAACGAGAAGGAGaccaattttgataaaacaaatttgGGGCAA
CTTTGCGCTCAAGGGTGCCTGAACTAGGGTTTTTTAAAAAgctgcttcat
tagtttttcctgatctTTTGCAAGGTTTCTTAAGAAGTGGCTGAagttgt
tttttggacctacctccgggtaccccggtggaggttctataaattaaccc
atgtccgttcgtccgtccgtctgttaccagcttttctcaggattggctNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNtgtgacggagccagatttttaagg
aaaatttttttgggcaaatttgggccaaaaacagcttaaaaggttttttg
ggcctgaatggtttaagtgattttcgtactttggggaaattcctttttac
cattttaaattattcaacacacaagctttatttttccattctgaattatt
gtacaattattgtcacttttttcttattttcaactgatgttaatcattag
gtaggtccattcagcatgttgcttgttttttttgttgtttttttttggaa
agttagctttttttaaatactgAAACAATTTCAACTTTGACAAAACATCC
AATTGTTTGCACTAGCCCACCACCAGACACACAAACACTGGAACAGCACC
AAGCCGATGAACAAATTGATGTCAATATTCTCAAGTTGATACGCCAAGAA
ATCCTCCCCAACTCGACAAGTCTGCCACAAGAATTTGTCGACACTTTGAT
GAAATTGCTGAATCGTGGATCTAGTCATACGACCAGTACTACCATGTTTG
ATAGTAAGTTTATTGATCTAAAGTTTGACATCTCGAAAACATTTCCCTAG
TAGTTGGTCGATCTTTGATGGATTTCCTCCTAGATAGGACTGATGTTTCA
ATTCTGTTACATCTGCATGTGGAAGGTGGATAGAATTGACACTTTCTGTG
AGTGAGTgagggagggagggagggagggaAAGAGGGATGAAGCGAGCAAG
CGAGTCAGAGGGTTCGATTGGCAACTTTTTACACGTTTtatatataagaa
cacgaggctgaaaattgagAAGAATCGGAGGATCACCTATTGTAAACATT
TGAGAATAAGCTAAATAAGATCAAaactgaatatttgtggataggTAATT
CGTTCATCACTTCAGGGTTCAGGGGAAGTTCAAACACTCTGGAAAAAGGC
TATCGCTTTTCCACCAAGTGTGATGAATAGGTGGTCTCAAAACGTGGTCA
GTGAACAAAGAAAAAACTGATTTAAGCTTTGTGACGATCTCGCTGAAATA
ACCAGAGAAAATGATTGCAGTTCGTTCATCTATATGTctgtttgtgtgtc
actttcgattttgcaagcaatgttttgttctcgataagtttgttttgatt
gacagatctgGTTTAGACTtcattcagcctttgttttgaaattcaaggcc
catctacatttagtaattgcccccgcaggagcgtagcgacgaggaggcat
tCATAGTTTCACGCTTAGATATTGTTGTTTgtgttgtcgcgcaagcatac
ccgtagttagtctcttccgtaatgttcggtttttttccggggcggtagta
tacatattttcatattacgttatatgctattaccattattacatattaca
actttagttttgatttagctttgaaaagctgaagcgagtgttataaatca
taacaaatcataacagtgtatgatataacacgaattacaatattacttgt
gcaaataatcaaaacaaacaaaatggcagactggtttatgatgatgatga
gctgattcattgactggaaaaagtgatttgtatttcaaattttgtttctt
gtctttgaaactgaatactaaatactttaatttagtcagaagttcatttc
aggtttcagcaatgatttcaattctttttccggaatctttaaagaaattg
gctcaagttttcaaatgtacatttgatatttttgttcaagctCTACTTTA
TCTTtgttgtcttttattttattaataactacttttattgtttatagagc
ttctcgaggtttaaataccatcatatggtcgtaactcgagaaagtcttag
taaaacaagataccgacaaaatacaaaaaagttgaatgtatgcatatgta
aagttgaatccaaaagtggttgaatgaatgttgaatgtcaatcaatgtaa
acaaactttttcttttggtcttcaaaatagatttacctcacttacaGACT
TAGAGtagttttttcactgttttttcagtgtggtaaatcgatttcaaaaa
cctgcaaaaagtttgcttacattcgtttaactttacatgcgcacattcaa
ctttttcatgcagttgtaaTAGCTTAAATAACTTACGcaccagtggtttg
gtgaaatagctccaattctggctttcctaGTTAGGATGGACCTTCACGAA
GGCATTtattaacggtggttagactaggtacacagacagtcatacagaaa
caccatgaagtgaaagtatatatagctataaactcaaaaagtctagcttc
ctgaaggcacatTTCTTCATTGTGTGCGCTGCGATCATCCTAATGGCTTC
AACCCTTTCaacttggagaaaagattgcatcatgaaaaagtactatgcac
ttgaaaaaaaatttaggcgcatttcaacttttctcgactgtacgtcagaa
tggaccacaatggcattcctttatttttcttttgaccaataaaatagaag
attttgcttgagaagtgcaatcacagtgtacgcaagtggaggccgggcct
taactaggattggtttctatttcaccctatttaagatggcgcagaacttt
ttgataaatttcatacgcagtctcctcttgactattgtttattatgCAAA
gaagcaatagagaattgttgaaatatagcagccaatgaaaaaagcaagct
atttctgattggctgccttgttgatttattcaccgctatatattTTGCCT
ACAATCTAAGATGTCTGTGGCATTATCAGAAAAGGTctaataatcatgac
atatattgttttaagaaagaaactgggagaaaaaaacaaacaggagatgt
gaaaaccagtaagctaatgataccataatttttgaaatatgtttttgaga
agctttttcagcttttccttaaattttattaaattatcaagctgcgaatt
gttcaagtattttgttaaaggaataattataatttttttttcaagcaaat
gcctcgatgaatcaatcaatcaaccaatcaatcaataattaaataaatca
attattcctgattattttttaatgttttaatctttaatgcattaaagctt
tataagtgcttgacatgatctttatgtgggggcatttagtgaaagctatg
actagttttaatttctgcccagctttgcccgatcctgtttttctcttttc
ttttgtttgaaatgttttcgtatttaacgatcgtatttattaatgacatt
cgcattcttttcaaaacaaaacaagtttcttttatagaaaagaacatttc
aaatgtaaatcaaaacataaaaatttaaaagtttgtcgaacaaaaaCAGC
ATTCAAAgagggcgataaaaagcaagagaagaaattagtccatctctttc
ttcatataaaaacattcaagtggttgatactgttaaaaactgtaCGTCAT
Tctacatgtttaaattcgaaaagttatgagaagggtttaaaaaaagcaat
tcaGAATTGACTTacttatctttttaaatctgataaaaacaaagttgcac
tattcttcgTGGCTTTCCCgctttagtgcgttcagctacaccttaaccgg
cgtgcgacgccgggtaccggctagttttcATATATTTCTTGGTTGAAAAG
GGCACATTCGATTTTGACTTTGTATGAAAGATCTTTTTGACAGCGTTCCA
GAAATTCTAtggattgatttgatttttgtttaaaatttgttgGTAATGGT
TTCTCTTTACATCTTTCAACCTCCCATTGCACTTATTTCCACGCTTCTTG
TACTGCTTGCAAAGGATACAAGTTCAACCTAAAAGTAACATGTAATACAC
ACTTGAAGCATGAAATTGTTTTGTGGAACCTTTCAGCATTGCTGGGGAAT
AGCTGGCAATGGTACAAtggtaaaatgctctaaaaatggcattcttaggt
ttagttgctatgatggtgatattcttatcatattctttaattttttgacc
aaattcATTATGAAAATTCCTATCCCGGGAATcgctgtttttgcagattt
tcattggaatttTCCTTagtatttctttgttttttcacacaaaaacatta
ttgctaacaatgctcaccatcaatcatgattcaattgtcaataaaactga
ttttttgaagctttaactttctaaaaatcaccggaacagccgagaatcgg
cGGAAAAACggtttctcttgaattttttgagctgtaatttacgttttcat
gaaaatttggACACTGACGCCagatggcaatacctaaaatgtgacagagc
ccgatatTCAATAAACATACTTTTCAGGCCGAAAATGCTGGTTCTAGCAT
CTAGCTTGTCTCAAGTAAACATCAACTTCTCCTCTTTTCCCAACGGTTCT
CGGTTTCGAATTAAAAgatagcccggggtccacttaaagctttttttata
gactggatggcgtgATTAAGTGACCCGGTAGTTTTGCTTAGGCGAAAGGT
AAAGACATTATGAACCAATgattttatttgagaataagggattgcaaatt
tgttattgatgtttgtttctcatttttgattatatgttttaactccaagt
agttttatttttatttggatttttaaaatgttctctCAAAATGGCGATCT
caccaaatgctcctagtctacttcactggactcagcgtcataattgatta
tcaaaaagcaaagttccgccaaaagtagactctagtctaattaAAAGATA
AAGCATCAGGTATGAGATTAAAACAGCAATCTTGTATAGTAAGTGAGTAA
ATAGGCGACATCCTCATTATGATAAGGTAATTAGCCAGCAGTAATTAGTC
TattatttctttcaaaacaCTTTCTAAAGGGACTTTCCTAAAAATTGGTA
TAAATTCTTGCAAGAAAAGCATCGAATACATTTACTCACTCTTTTCACAA
CAACTGAGATTATTTTCGAGTATTTACAAGATGGTTCGTATCTCCTTTTT
GGTGACTTGTTTTCTCTTCATATTGATATCATCATTTCATTGCAATGGGT
TCCAGTTTGAAAAGTTTGGAATGTTGGCTTGCACTGAAACAAATAATATA
ACCATTATTGCTAATTTTATTGAATTGGAATTTTTGGATGACCTCTTGCG
ACGTTTGGAGCCTTTGACATGGAACGAAGATTGCTTCACGATCAATGTAT
ACCTTCCTAGTGATGGTTTTGTTGTTCAATGGCGACCGAACTTTAATGCC
AAtcattttgaaaggaattttcTTCAAAGCGTAATTAAATACAGAGTATC
TTCGGAGGATATTGCTCACAAGAATGTGATAAATTTCTTGGTTCGTCTTT
ATAACGAAGAAGTGATGGGAACTAACACTGTCAAACAAACGTTAGTCTAT
TTACATAGTTTCACACAAAAGTGGGTCTTTTTACATACCTTTTGGACATT
CATGGTGGACGGAGAAAAAAGACGGGTTTTCAAAGACGAAACGATTTCCT
TTTTGCGAAGGCTTCAAGATGATCGATTGTGGAAGATAATTTTTCACTGT
AGCACTCTTCTTTGTGAATTTCCTATTTGGTTGCCTGCCCATCGAATCTC
TTTTGCATATGATTGGAAATGGAATTTACCTGTTGAGACAACAAAAATGT
TACTCAAAGATCTAACTGATGTGATAAAAGAACCAGATTTCGACCGATGC
GAATACATGCAACGATACCTTCTCTCAAGAGATGACCTGTTTAATGAAAC
TTGTATGAATGAAATATCTATGATCAATATATACATGAAAAACCCTATTG
CTTTTTATTTTCCGTATTTTGTTGCCTTATTGAACAAAGTAAACACTCCG
CGTGAAATAAAAAAGACACAACCGTTATTGTTGATCGTGATACACTACTA
TAATGATGATGTaaaatcttttatcaatcatGTAAGGCAATTTACTAAAA
AGTTAAGCTATCTTTTTTATACCACTGTGAGCGATAGTTTTTATGAATTT
GAACAAAACGTTTCTTTCAATATTCGAGACGATGAAGGATGTGAATCTTT
TTCAAGATCAAACATCAACCATTACCGTTGGGCATCTTTGGATATGAAAG
ATTGCCATCTCAATGATGTAAAAGTGAAAACATTTGAAAGTTTGGATGAT
CTTATAGAAATGATGAACCAGGATATTtgtgaaaaacaaagattaaaTTG
AAACATTACAGTCATGTTGCATCTATATgtgaaatgaaaacattttaaat
ttttgatgaatttatAGCGatgaactaaaacaaaatatttgtgAACCTTC
CCTTTTAATTGTATTGTAATCTTTtataaaacattattttttcagtTTAA
GCTTTAAAAAAACATGGATTACAATCACAGATTATAAGAGATACAAGAGA
TTCTCCTTTATATAGTGTATTTCTCTTGAGGCGATAAAAAATTTTAGCCA
GGCACCACTGGATTGACATTTGAAAACTACAATAAGGTTtggtcaatcac
actcctaaaaTTCGATTTTTACTAATTTATGTAGCATTTCTAATAGTTAA
GTCTGAATTTATGGTGTGTTTTTTTATCACACTCCTCAGACATTTTGAGT
GTGTGTGGAGGCGTGTGCATGCTATCGCACGCCTTAAATTATTCTGACGT
GTACCATTTTTTCATTGATTCTTTTTGACGttaaacaagagccgcaaaga
tgcggataaatatttcctttacaaatgataaaataatcattgatgtcctc
aaaagatttcaaagtgctttgtctcagataacatcaagcaacacatACAA
GTccccaagaatttcaaaattcgtttaTGTAATTGCTAGTATTTGCAGGA
TTATTCCTAAGATGAGGAAGGTTCAAACCTACGGATTACGGagtatatcc
aagctgaactcGACTGAGAATAACAATGCAGTAACTAAATTGGCTAGACA
ACCTTTAGTTTtggttactctcgggtacctaatagctgcccccccccccg
ctaattaatttttcgaagattttccacccaggacattcttattccaacca
aCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcccgccgagta
gagtgttgtgttattgaacacatcaaaaggccTTGGGATAGTGCATAAtt
atatcattttattttatgcCAGAAATGTTAGCCAAAAAGGGGAAAtatct
gaaatgaaagaatgacaaaaaggaaaaaagttgtcatgccaggccaggaa
atcacttgaaaatATTGTCAATTGACAccaaagttttcttcattttttaa
atgcatatgtggaagaaaaagtgaagttttaaacgcacattgaagaaaat
aatacgctcgactgttttgttagaagcacttgttatacatttttggaaag
ctaagaggtagggggaatcgaaattaatatgtttccaatttttattcgga
cactttggtgtgattttcggacaaatatgacggtctcaggcaaaaatcat
agggttaaaaattaatgaaaattttagctcgagaaaacggagaccNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNatcaa
caggtctccgttttctcgagctaaaattttcattaatttttaaccctatg
atttttgcctgagaccgtcatatttgtccgaaaatcacaccaaagtgtcN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNtcgattcccctaccccttagctttcca
aaaatgtataacaagtgcttctaacaaaacagtcaagcgattccaaaaaa
tcgaacaaaattccccctactattaaaTGTAACGTCACTTTAGTcgagct
acaatcatggtcgaaatatattgagattttagtgtattttaacgtttttc
agaattcaaagttcgggtgagaattgctattttagcacttccactttctt
tcattgaatatttcgattttagaggggttctGTGGCTTCTAGgttatatt
ccaagccttattcgagcaaatttgagctttcaaATCCTGAGAttcttaag
tcttaagtctcatgttaaaagtcagagttaaaactctactttccaactgt
agtttaggCGCTTAagaatcatttgtggtgttcaAAGTTTTgccgggaac
tcccctttgtctcaaatattgtgtccatgattgtagatcttaattttttt
taccttcacaaatagaaatgatttttttctgagcaaaaagttttcattca
aaattcaaaattttttcgccatcatttcagaaatatttttcttgttctgt
ttacaaaatttcagctcCAAAGTATTTTTGGTCCTTGAGATACCGAGATT
CATTTGttgttgaatttttctttttactccGAGAAAggtttaatttcttc
tttttttcttcagatgttTGGGAAATTTTGCGCCAaaagaaattcgcgaa
attcgaAGAAATTGTCCACCAAAAACCGAACATCGTCAACTCGTTGCGTG
ATGGTGATGGTTGGACACTTCTCGTGTGGGCTGTTTTGAATGATCGTTTC
GACGTTTTCGTTCACTTGATGGAATATCCTCAGGATTTTTCACTCGTGAG
CAATGTCGATGGATGGAACATTCTTCATTATGTTGGTCGTCATGGAACAG
TTCgttatttggaaaaatttggtcAACAAACAATCGAAATATTGATCAAT
GGCAGAAACAAACAGAACAACACACCATTGCATTTTGCAGCACGTCGCaa
caatcatgacgtcatcagatggtTGTTGGCCAAAGGAGCGGATCATgaag
agaaaaatgaagatggtCGACGCCCTGATGAACGTTGTGATGGTTGTGAT
GGTGTTACCAAAGAAATCATTCAATCGTTTCTTGGTAAGAAAAATATCCA
CTTTTTCATGTGTTTTTTTGGGCGGGAATATTTTTAGgagtttgaaagaa
tttttgttCTATTATTGCGAGAgtgtgaaaactttttttttttcaataga
agtgaaaAGTTAGCGTCggataaattttacttttttggaaTTTAAATCAA
TGAAACGGATGAattgatttcgattttttgattgagatttttcattgcat
ttgagCAGACATATTTTTGAGACGGttgaaatttacaaatagattgtTGT
TTGTGAAATGTTTTCTCAGTTTGTTACTAGTATGAGTTTATGTTTTGGTG
GAGAAAttgtcgtttttttttattttatcgaaCGTCTCTTATGATATTGT
TCATgcgtttcaaaagttttttattcgattATTTACTTTTCAGATTGATT
GTTTGTTTCCATTGTTTGTTTCGTCGtttccaatgacgtcatcggttccA
AATTATTTCCACGTAAGTATATTTAATTATGTAAACTTactcggccctaa
gtgactaaatttgggcttggtgactaaaattagggccgactaaaaattag
tTATTAGTCAGCCCTTAGTGATTAAATTTTGACGAAAAGCCTaaattttt
ctgcatttttttaacaaatgaatctattttaaaaaacttagaaagaAGGG
CTTGGTTAGCCTGTAGAAGGGTTTTGACCCTTCTTGGTGGACTGAAAAGA
CCAAGGGAAATTCAGTATGATGTACAGTTCGGACTTTTATGTGACTGAGA
CGAATCCACGCAAGTCTCGGTTGTAAagtgttgaaatattttcagaatAT
CTAAGCTTCTTCAATTAGTCGAACAAATGCAAATGTTTTTGTACTcggtg
ttttttaaacttttccaCCACATCAGCATTCTCATTAGCCgcttctttaa
aaaaaccattttcgAATCAGCAAGTTTCGTTTTGCAAATTGAcctccaaa
attttcaaacttttgttttcagattCCACGCTTGAGAAGTTACACCAGTC
ATTTTTGACGCCGTTTCTATGATTACGTTATTCATTCACTCCGTCTCTAC
AGTTCTGTTTGCGTTCAAATATTTCTGCCTtaattttggcttgtttttaa
aTGTATTTTCACCACGTCACTAACCTGACAATTATTACGAACACTGTGTC
GTCAAACCAGAAAATTGTCGTTTCACTTAATTTTCTGAATATAAACGAGA
TTCAAGGATCTATTACTAAAATAGCAAGTTTTTCGgagtaaattttcaat
ttgttcaATTGATTCCTAAGAATCGATGAGAGTCGAGAAAGGctaggaaa
aaacaaaaaagagc

Coding sequence (CDS) from alignment at scaffold_485:399654..412367+

>TCONS_00068500 ID=TCONS_00068500|Name=TCONS_00068500|organism=Clytia hemisphaerica|type=CDS|length=2832bp|location=Sequence derived from alignment at scaffold_485:399654..412367+ (Clytia hemisphaerica)
ATGGCTTTAGCCACAACATTAGAagatttcttgttttcaaaaagCCCACC
ACCAGACACACAAACACTGGAACAGCACCAAGCCGATGAACAAATTGATG
TCAATATTCTCAAGTTGATACGCCAAGAAATCCTCCCCAACTCGACAAGT
CTGCCACAAGAATTTGTCGACACTTTGATGAAATTGCTGAATCGTGGATC
TAGTCATACGACCAGTACTACCATGTTTGATAatgttTGGGAAATTTTGC
GCCAaaagaaattcgcgaaattcgaAGAAATTGTCCACCAAAAACCGAAC
ATCGTCAACTCGTTGCGTGATGGTGATGGTTGGACACTTCTCGTGTGGGC
TGTTTTGAATGATCGTTTCGACGTTTTCGTTCACTTGATGGAATATCCTC
AGGATTTTTCACTCGTGAGCAATGTCGATGGATGGAACATTCTTCATTAT
GTTGGTCGTCATGGAACAGTTCgttatttggaaaaatttggtcAACAAAC
AATCGAAATATTGATCAATGGCAGAAACAAACAGAACAACACACCATTGC
ATTTTGCAGCACGTCGCaacaatcatgacgtcatcagatggtTGTTGGCC
AAAGGAGCGGATCATgaagagaaaaatgaagatggtCGACGCCCTGATGA
ACGTTGTGATGGTTGTGATGGTGTTACCAAAGAAATCATTCAATCGTTTC
TTGATTGAATGGCTTTAGCCACAACATTAGAagatttcttgttttcaaaa
agCCCACCACCAGACACACAAACACTGGAACAGCACCAAGCCGATGAACA
AATTGATGTCAATATTCTCAAGTTGATACGCCAAGAAATCCTCCCCAACT
CGACAAGTCTGCCACAAGAATTTGTCGACACTTTGATGAAATTGCTGAAT
CGTGGATCTAGTCATACGACCAGTACTACCATGTTTGATAatgttTGGGA
AATTTTGCGCCAaaagaaattcgcgaaattcgaAGAAATTGTCCACCAAA
AACCGAACATCGTCAACTCGTTGCGTGATGGTGATGGTTGGACACTTCTC
GTGTGGGCTGTTTTGAATGATCGTTTCGACGTTTTCGTTCACTTGATGGA
ATATCCTCAGGATTTTTCACTCGTGAGCAATGTCGATGGATGGAACATTC
TTCATTATGTTGGTCGTCATGGAACAGTTCgttatttggaaaaatttggt
cAACAAACAATCGAAATATTGATCAATGGCAGAAACAAACAGAACAACAC
ACCATTGCATTTTGCAGCACGTCGCaacaatcatgacgtcatcagatggt
TGTTGGCCAAAGGAGCGGATCATgaagagaaaaatgaagatggtCGACGC
CCTGATGAACGTTGTGATGGTTGTGATGGTGTTACCAAAGAAATCATTCA
ATCGTTTCTTGATTGAATGGCTTTAGCCACAACATTAGAagatttcttgt
tttcaaaaagCCCACCACCAGACACACAAACACTGGAACAGCACCAAGCC
GATGAACAAATTGATGTCAATATTCTCAAGTTGATACGCCAAGAAATCCT
CCCCAACTCGACAAGTCTGCCACAAGAATTTGTCGACACTTTGATGAAAT
TGCTGAATCGTGGATCTAGTCATACGACCAGTACTACCATGTTTGATAat
gttTGGGAAATTTTGCGCCAaaagaaattcgcgaaattcgaAGAAATTGT
CCACCAAAAACCGAACATCGTCAACTCGTTGCGTGATGGTGATGGTTGGA
CACTTCTCGTGTGGGCTGTTTTGAATGATCGTTTCGACGTTTTCGTTCAC
TTGATGGAATATCCTCAGGATTTTTCACTCGTGAGCAATGTCGATGGATG
GAACATTCTTCATTATGTTGGTCGTCATGGAACAGTTCgttatttggaaa
aatttggtcAACAAACAATCGAAATATTGATCAATGGCAGAAACAAACAG
AACAACACACCATTGCATTTTGCAGCACGTCGCaacaatcatgacgtcat
cagatggtTGTTGGCCAAAGGAGCGGATCATgaagagaaaaatgaagatg
gtCGACGCCCTGATGAACGTTGTGATGGTTGTGATGGTGTTACCAAAGAA
ATCATTCAATCGTTTCTTGATTGAATGGCTTTAGCCACAACATTAGAaga
tttcttgttttcaaaaagCCCACCACCAGACACACAAACACTGGAACAGC
ACCAAGCCGATGAACAAATTGATGTCAATATTCTCAAGTTGATACGCCAA
GAAATCCTCCCCAACTCGACAAGTCTGCCACAAGAATTTGTCGACACTTT
GATGAAATTGCTGAATCGTGGATCTAGTCATACGACCAGTACTACCATGT
TTGATAatgttTGGGAAATTTTGCGCCAaaagaaattcgcgaaattcgaA
GAAATTGTCCACCAAAAACCGAACATCGTCAACTCGTTGCGTGATGGTGA
TGGTTGGACACTTCTCGTGTGGGCTGTTTTGAATGATCGTTTCGACGTTT
TCGTTCACTTGATGGAATATCCTCAGGATTTTTCACTCGTGAGCAATGTC
GATGGATGGAACATTCTTCATTATGTTGGTCGTCATGGAACAGTTCgtta
tttggaaaaatttggtcAACAAACAATCGAAATATTGATCAATGGCAGAA
ACAAACAGAACAACACACCATTGCATTTTGCAGCACGTCGCaacaatcat
gacgtcatcagatggtTGTTGGCCAAAGGAGCGGATCATgaagagaaaaa
tgaagatggtCGACGCCCTGATGAACGTTGTGATGGTTGTGATGGTGTTA
CCAAAGAAATCATTCAATCGTTTCTTGATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042726XLOC_042726Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068500-exon-scaffold_485-1491911889:399654..399904TCONS_00068500-exon-scaffold_485-1491911889:399654..399904Clytia hemisphaericaexon
TCONS_00068500-exon-scaffold_485-1510915933:399654..399904TCONS_00068500-exon-scaffold_485-1510915933:399654..399904Clytia hemisphaericaexon
TCONS_00068500-exon-scaffold_485-1575043694:399654..399904TCONS_00068500-exon-scaffold_485-1575043694:399654..399904Clytia hemisphaericaexon
TCONS_00068500-exon-scaffold_485-1491911889:401819..402006TCONS_00068500-exon-scaffold_485-1491911889:401819..402006Clytia hemisphaericaexon
TCONS_00068500-exon-scaffold_485-1510915933:401819..402006TCONS_00068500-exon-scaffold_485-1510915933:401819..402006Clytia hemisphaericaexon
TCONS_00068500-exon-scaffold_485-1575043694:401819..402006TCONS_00068500-exon-scaffold_485-1575043694:401819..402006Clytia hemisphaericaexon
TCONS_00068500-exon-scaffold_485-1491911889:410567..411037TCONS_00068500-exon-scaffold_485-1491911889:410567..411037Clytia hemisphaericaexon
TCONS_00068500-exon-scaffold_485-1510915933:410567..411037TCONS_00068500-exon-scaffold_485-1510915933:410567..411037Clytia hemisphaericaexon
TCONS_00068500-exon-scaffold_485-1575043694:410567..411037TCONS_00068500-exon-scaffold_485-1575043694:410567..411037Clytia hemisphaericaexon
TCONS_00068500-exon-scaffold_485-1491911889:411447..411515TCONS_00068500-exon-scaffold_485-1491911889:411447..411515Clytia hemisphaericaexon
TCONS_00068500-exon-scaffold_485-1510915933:411447..411515TCONS_00068500-exon-scaffold_485-1510915933:411447..411515Clytia hemisphaericaexon
TCONS_00068500-exon-scaffold_485-1575043694:411447..411515TCONS_00068500-exon-scaffold_485-1575043694:411447..411515Clytia hemisphaericaexon
TCONS_00068500-exon-scaffold_485-1491911889:412026..412367TCONS_00068500-exon-scaffold_485-1491911889:412026..412367Clytia hemisphaericaexon
TCONS_00068500-exon-scaffold_485-1510915933:412026..412367TCONS_00068500-exon-scaffold_485-1510915933:412026..412367Clytia hemisphaericaexon
TCONS_00068500-exon-scaffold_485-1575043694:412026..412367TCONS_00068500-exon-scaffold_485-1575043694:412026..412367Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068500-proteinTCONS_00068500-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_485supercontigscaffold_485:399654..412367 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.155564	0.16625	0.0814463	0.232532	1.40202	1.83779	1.79814	1.32953	1.41047	1.36368	1.37219	1.45913	2.06192	1.11093	0.825554	0.719113	0.779682	0.878404	1.41877	1.54475	0.960489	1.02255	0.893054	0.663868	2.32279	2.92245	1.50306	1.20964	2.08266	2.0454
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
IPR032817Mon2_C
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00068500 vs. Swiss-Prot (Human)
Match: MON2 (Protein MON2 homolog OS=Homo sapiens GN=MON2 PE=1 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 2.703e-17
Identity = 42/101 (41.58%), Postives = 68/101 (67.33%), Query Frame = 1 
Query:  199 STWMALATTLEDFLFSKSPPPDTQTLEQHQADEQIDVNILKLIRQEILPNSTSLPQEFVDTLMKLLNRGSSHTTSTTMFDNVWEILRQKKFAK--FEEIVH 495
            S W  LA T EDFLF+KS PPD  ++++ Q +E IDV +++LI  EILP +  +P+EFV  +M +LN+GS H+ S++  +   +I  +++F+K  FE ++ 
Sbjct: 1488 SMWPELANTFEDFLFTKSIPPDNLSIQEFQRNENIDVEVVQLISNEILPYANFIPKEFVGQIMTMLNKGSIHSQSSSFTEAEIDIRLREEFSKMCFETLLQ 1588
The following BLAST results are available for this feature:
BLAST of TCONS_00068500 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MON22.703e-1741.58Protein MON2 homolog OS=Homo sapiens GN=MON2 PE=1 ... [more]
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