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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068486 ID=TCONS_00068486|Name=TCONS_00068486|organism=Clytia hemisphaerica|type=transcript|length=2523bpRun BLAST on NCBI protein sequence of TCONS_00068486-protein >TCONS_00068486-protein ID=TCONS_00068486-protein|Name=TCONS_00068486-protein|organism=Clytia hemisphaerica|type=polypeptide|length=408bp MPSVDELAAQAAEQMRLYEDQKETSQRRQEAAKNLQNASLQDKLNARLKKRun BLAST on NCBI transcript from alignment at scaffold_485:183632..226252+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00068486 ID=TCONS_00068486|Name=TCONS_00068486|organism=Clytia hemisphaerica|type=transcript|length=42621bp|location=Sequence derived from alignment at scaffold_485:183632..226252+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_485:183632..226252+ >TCONS_00068486 ID=TCONS_00068486|Name=TCONS_00068486|organism=Clytia hemisphaerica|type=CDS|length=13497bp|location=Sequence derived from alignment at scaffold_485:183632..226252+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00068486 vs. Swiss-Prot (Human)
Match: TGFI1 (Transforming growth factor beta-1-induced transcript 1 protein OS=Homo sapiens GN=TGFB1I1 PE=1 SV=2) HSP 1 Score: 92.0485 bits (227), Expect = 2.387e-19 Identity = 45/119 (37.82%), Postives = 65/119 (54.62%), Query Frame = 1
Query: 997 VCANCNDVIKPNEQFFKALNCIWHINHFRCFQCNTDLGGS-YVDVDGSPFCKNCYLLKNAPKCKGCSNPITGAYINAIGVYWHADCFSCRQCLRKPSPDVQMYEKDGLPYCGECYKQMM 1350
+C +CN I Q AL WH HF C C+T LGGS + + DG+PFC CY + +P+C C+ PI + A+G +WH + F C C +P D +E++G PYC + Q+
Sbjct: 227 LCGSCNKPIA--GQVVTALGRAWHPEHFVCGGCSTALGGSSFFEKDGAPFCPECYFERFSPRCGFCNQPIRHKMVTALGTHWHPEHFCCVSC-GEPFGDEGFHEREGRPYCRRDFLQLF 342 HSP 2 Score: 85.1149 bits (209), Expect = 3.715e-17 Identity = 41/114 (35.96%), Postives = 56/114 (49.12%), Query Frame = 1
Query: 988 FGSVCANCNDVIKPNEQFFKALNCIWHINHFRCFQCNTDLGG-SYVDVDGSPFCKNCYLLKNAPKCKGCSNPITGAYINAIGVYWHADCFSCRQCLRKPSPDVQMYEKDGLPYC 1326
F C CN I+ + AL WH HF C C G + + +G P+C+ +L AP+C+GC PI YI+A+ WH DCF CR+C P +E +G P C
Sbjct: 283 FSPRCGFCNQPIR--HKMVTALGTHWHPEHFCCVSCGEPFGDEGFHEREGRPYCRRDFLQLFAPRCQGCQGPILDNYISALSALWHPDCFVCRECF-APFSGGSFFEHEGRPLC 393 The following BLAST results are available for this feature:
BLAST of TCONS_00068486 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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