TCONS_00068276 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068276
Unique NameTCONS_00068276
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length650

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068276 ID=TCONS_00068276|Name=TCONS_00068276|organism=Clytia hemisphaerica|type=transcript|length=650bp
AACAATTACATCACCAACATTCCTGTGGTTGAAAAAGCTTTCCGCTACAC
AATGGAAATCAAACCTGTCGGTGTTCGCCCTGGGTGGACGAGCATCTTCC
ACGCCACCAGGAACGTGAAAGGGAATCGAAACTGTTGTGGGTATGGAAGT
CGTATTCCTGCTTTATTCTTTCATTCCAACACAACCAAGTTACATACCAC
AGCCTCCATCAATGGTAGAGGTAACTTTTACATTAATAACGATATGGATA
TGGATCGATTCACTGTAGTGACAATTGAACAATCGAGACAACATGACGGT
CAATATCGATTCTCATTGATGTTTGACTACATCGAGGTGTATACAGTAAT
CAACAAGCAACCTGAAGTTTTCAAAGATGTCAGTATCTACATCGGTGACC
CGTGGTACGAACCAAGCAATGTCGTCGTCCGAAATTTCCACTTCGAAAAT
CTACATTCTTAGTTCttcattcaaaatattgttattgTCTTTATTCAAGA
ATATATCAAGCCTGTAATCCTATTTCATAAATGTACTAGTTTTTTTAAGT
AGCGaggatacacgcttttttttataagaatggtgtaaatcaatttcatc
atggatattcttaacttttttgggaaaatcatcctaaaatattcttacag
Run BLAST on NCBI

transcript from alignment at scaffold_482:412249..416558+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068276 ID=TCONS_00068276|Name=TCONS_00068276|organism=Clytia hemisphaerica|type=transcript|length=4310bp|location=Sequence derived from alignment at scaffold_482:412249..416558+ (Clytia hemisphaerica)
AACAATTACATCACCAACATTCCTGTGGTTGAAAAAGCTTTCCGCTACAC
AATGGAAATCAAACCTGTCGGTGTTCGCCCTGGGTGGACGAGCATCTTCC
ACGCCACCAGGAACGTGAAAGGGAATCGAAACTGTTGTGGGTATGGAAGT
CGTATTCCTGCTTTATTCTTTCATTCCAACACAACCAAGTTACATACCAC
AGCCTCCATCAATGGTAGAGGTAACTTTTACATTAATAACGATATGGATA
TGGATCGATTCACTGTAGTGACAATTGAACAATCGAGACAACATGACGGT
CAATATCGATTCTCATTGATGTTTGACTACATCGAGGTAAAAGAAAGAGA
TttggttttcttcattttatacACACAAAAATATAAGCTCATATGTCTTG
cagaaaaaaatatcgaatcaCAGACTTTCCTTTCACAAATCCTCACGTTG
AGTCGTTGAGTAATAAATCTAGATTCTAAATATtgcattaaaatattttt
gtaggaCGGGATGAGAAGAACCGTCTTCTATTCACACGTTTAAGATATTG
CTAAGTTAAATCCACCACTCTGACTCAAGCAGGTACCTTCAAGCACCATC
TTTTACTTAGTACGAAAGCTTTGGTATAACCTGGCCAAGGCGATTGAAAG
AACTTCCGCACCGTAGTCGAATGCTATAATTTCATGCTATGGCCGTTTAG
TAATCAAAACATGTTAAAAATACTGCTTAAGTGAAATTCCACCATTTTGA
CTATTTCAGGTGTATACAGTAATCAACAAGCAACCTGAAGTTTTCAAAGA
TGTCAGTATCTACATCGGTGACCCGTGGTACGAACCAAGCAATGTCGTCG
TCCGAAATTTCCACTTCGAAAATCTACATTCTTAGTTCttcattcaaaat
attgttattgTCTTTATTCAAGAATATATCAAGCCTGTAATCCTATTTCA
TAAATGTACTAGTTTTTTTAAGTAGCGaggatacacgcttttttttataN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCTTACTCCATATGGAAG
ACTCAACTGTATTTATAATCCAATGGTATTCGCACGTCTTCATTCGGGTC
CAATAGAAAGAACCACATATGATcatgagagaaaaaaagaacataaGTTT
CATTCAATAACGACATTTTCTAGGTTCCAACATTCCAAACTTGTTGATCA
CCGACAGATGCAAATTATACATCCTAAATGACGGTAATAAACCCGTCAGT
CGAACATTGAACCCCTTCAGAATGACGTCAGTCAAGATTAGACAAGAGTT
GACGTCATTTGGTTTGTACAGGTTAGTGGAGTTCATTTCTATCttagaaa
attatttatttaacTAACCGAAGGAGGCTTTGCGAAAAgaagttttaaag
ttttgttaagttacgtaacttcaACCATTATGGacgcaaacgttcgaatc
tgtagatGTGATCCCTagcgcaaatcgaacgtttgcttccaaaATGGCGG
AATCTgcgtaacttaacaaaacatggAAAACCTTTAAAAGAGCTTTTAAA
AAAATGCTATGTGATTCTAAAAAGAGAGAACAGAGGCTTTCATCCGACCG
TAATACGAATTTCGTGTGCAAAACTCTACGTTAAAAGGTGTCAGGCTCAA
ATTTGATTATTACTTCAAGTAATTTGCACTTCTGTTAAAAGCGCTAGAAC
TCTGATTAATAAATATGTGTTTTAGTTACACAATCCACTTGGATGGGAAA
GAAGTTCACCAAGTTTTCAACCAGAACCCTGCAACATACAAAGGAAACAC
TTTATACACCAGTGATCCATATCACAATGCAGCTGACGTCATCGTTCAAG
ACCTCAAGATCGTCTCACCTCTTCCAATGAACGGTAAGAAGTTGCAGTGC
ATTATGGgaaagtaagtctgcgacccgaaggctcctctttaaatggctat
ctacccgaaggtagggaagggcgccactctttctccgtggatttctccac
ttacccttgatccttttcttaattgttgagcatcaagcagagaggcatca
agtaccattttgagaatatttggtatgacccggctggggaacccacaacc
ttgcgagcCGTAGCCGGATgttctaccactgcactacggtcgcaaTCATC
AAGTTTAGCCTGAAGGCCTAAAGAGGAATCCTCTCAACTCTCTCTCAAGC
AAGAAAAGGTGAAGCCTAGATTTGTACAGCTTTCAGAAGGACGGAATGAT
CGAATCTAGCGCTTTCTGGCGaaagtttttaatttcaatACGCCCCTTCT
AACAGACCCGGAAGGGTGTTGCATTGCACAAACGCGGAAAAAAACTTCTc
atgtccccaagcctttagtgTGAAACCCACGCCGGTCACGCGTTTCGAAA
GGGAGataaatggcttcatttcccaaTCAAACGTTTCATCTGTTAGCCCC
CTTCAGGTTTTTAAATTCAACGTGTGCAATACATGGCTGGGTTCGTCCAG
AAAGCTAATGATTGATTAACTCTACAAGATTGGTGACATACATATCGAAC
AATATGGTCTTCCTCTTTTAGTGTACGTACCAAGGAAAAACAATTACATC
ACCAACATTCCTGTGGTTGAAAAAGCTTTCCGCTACACAATGGAAATCAA
ACCTGTCGGTGTTCGCCCTGGGTGGACGAGCATCTTCCACGCCACCAGGA
ACGTGAAAGGGAATCGAAACTGTTGTGGGTATGGAAGTCGTATTCCTGCT
TTATTCTTTCATTCCAACACAACCAAGTTACATACCACAGCCTCCATCAA
TGGTAGAGGTAACTTTTACATTAACAACGATATGGATATGGATCGATTCA
CTGTAGTGACAATTGAACAATCGAGACAACATGACGGTCAATATCGATTC
TCATTGATGTTTGACTACATCGAGGTAAAAGAAAGAGATttggttttctt
cattttatacACACAAAAATATAAGCTCATATGTCTTGCAGAAAAAATAT
CGAATCACAGACTTTCCTTTCACAAATCCTCACGTTGAGTCGTTGAGTAA
TAAATCTAGATTCTAAATATTgcgataaaatatttttgtaggaCGGGATG
AGAAGAACCGTCTTCTATTCACACGTTTAAGATATTGCTAAGTTAAATCC
ACCACTCTGACTCAAGCAGGTACCTTCAAGCACCATCTTTTACTTAGTAC
GAAAGCTTTGGTATAACCTGGCCAAGGCGATTGAAAGAACTTCCGCACCG
TAGTCGAATGCTATAACTTCATGCTATGGCCGTTTAGTAATCAAAACATG
TTAAAAATACTGCTTAAGTGAAATTCCACCATTTTGACTATTTTAGGTGT
ATACAGTAATCAACAAGCAACCTGAAGTTTTCAAAGATGTCAGTATCTAC
ATCGGTGACCCGTGGTACGAACCAAGCAATGTCGTCGTCCGAAATTTCCA
CTTCGAAAATCTACATTCTTAGTTCttcattcaaaatattgttattgTCT
TTATTCAAGAATATATCAAGCCTGTAATCCTATTTCATAAATGTACTAGT
TTTTTTAAGTAGCGaggatacacgcttttttttataagaatggtgtaaat
caatttcatcatggatattcttaacttttttgggaaaatcatcctaaaat
attcttacag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042614XLOC_042614Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068276-exon-scaffold_482-1491911889:412249..412584TCONS_00068276-exon-scaffold_482-1491911889:412249..412584Clytia hemisphaericaexon
TCONS_00068276-exon-scaffold_482-1510915933:412249..412584TCONS_00068276-exon-scaffold_482-1510915933:412249..412584Clytia hemisphaericaexon
TCONS_00068276-exon-scaffold_482-1575043694:412249..412584TCONS_00068276-exon-scaffold_482-1575043694:412249..412584Clytia hemisphaericaexon
TCONS_00068276-exon-scaffold_482-1491911889:416245..416558TCONS_00068276-exon-scaffold_482-1491911889:416245..416558Clytia hemisphaericaexon
TCONS_00068276-exon-scaffold_482-1510915933:416245..416558TCONS_00068276-exon-scaffold_482-1510915933:416245..416558Clytia hemisphaericaexon
TCONS_00068276-exon-scaffold_482-1575043694:416245..416558TCONS_00068276-exon-scaffold_482-1575043694:416245..416558Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_482supercontigscaffold_482:412249..416558 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.702333	0.222196	0.141376	0.313764	0.541502	0	0.194186	0	0.219057	0	0	0	0.00935256	0	0	0	0	0	0.128259	0	0.161457	0.193972	0	0	0	0	0.207169	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068276 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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