TCONS_00068221 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068221
Unique NameTCONS_00068221
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length812

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068221 ID=TCONS_00068221|Name=TCONS_00068221|organism=Clytia hemisphaerica|type=transcript|length=812bp
ATCCTGGACGACCCTACTAAAGAAAAAGTGAAAATTTTACTGCGAACACC
AACCAACGAACGAAAACAAATTCTTATCTACCACGAAGCCACTCTAGAGG
ATTTAGCAAGAGAAGTTTCGAAGCTTGGTTGGTCCAGTTCTCGTTACGAA
TTGATCAAATCGTTTCCACGGCAAAATCTTTCATCATTAGATCAAACAAC
CACATTAGAGAAGGCTGGTCTGCATAAACAGGAGACTATTTTCATACAAG
ATAGGTAACActatagatgaaatttttgttctTGTTATAATTAAGATTCA
TTTAAGGAATTGATTTGAGGCTATGAAGAACATTTCAATTATTGTGGCTA
TTCGGATTATATTTGGGGATTTTAGTTTGCGGTTCACTCAAATCAATCTG
AAATTGAGGaaagttttgatgtttttttcatCCTTTTTTAGGCTATTTAT
GGTTCTTATTTTGTCtgagccaaagttcgaaaatcgatcCTTTGAGAgac
catttttttaatttttagctcGAAATCATCAGATTTTATGACTCTTTAAG
GGagtcaatttttgatatttcgtATAATTTTGGGACCATTTCAGAGAATC
AATTTCTAATTCATCGTTTTTTGTACCcgtttgagagactttcgagggtt
tGAAAAAAAACGACTGCTAAGGCCCCCTGGGGGGTTTGATGCGTTACTCA
ACTTTTCAGTTTAATGGTTAGGCATCCATTGTAAAAATTTTGTACATAGA
ACTTATATATTATTTACtaggttttttattttgtcatatCAAAAAGATGT
TACTTTACGAAT
Run BLAST on NCBI

transcript from alignment at scaffold_480:12563..18673-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068221 ID=TCONS_00068221|Name=TCONS_00068221|organism=Clytia hemisphaerica|type=transcript|length=6111bp|location=Sequence derived from alignment at scaffold_480:12563..18673- (Clytia hemisphaerica)
ATCCTGGACGACCCTACTAAAGAAAAAGGTTAGTCTTGTCTTACTTACCG
CCAAAGTGTATAACTTTTCTATTTCCAATTTGCTTTTTCGGGATACTTTC
GCTGATATTTTCGTCGTATACCAGCTAAAAAAAGTAAAGAGCCCTTTCAT
AGTTATGGAATGAATGAATGAATGAATGAATGAATGACCTAAAACTTCTT
TTTTTTTCTTCAAACTAACGGAAGCCCTGAACTTTTTCCGAGTGGCGAGG
GTAAAGTTGTTTCGAGGAAGAGAAAATTTTGCGCTTTGACGGTATAGTCT
AAAAACAGCTACAATCGGCGCCGAAATATTTGGCACAAAAGGGGAATTCC
CTGAAAACTTTAAAACCGCAAGTGATTTTAAGTGCTTTGAAGCACGGTTT
GAAAGTAGAGTTTTAACTCTTGAGTTTTAACATTACACTTAAAACTTGGA
CCTTCACCTTAGGATCTCAGAATATAAAAGCTCAAAAATGTTCCAATTAG
GCCGAGAATATAGCCTGGAAGCCACTTAACCCCTCCAAAATCAAAACAAT
CCAATGAAGCAAAGTGGAAGTACTAAAACTGCAATTCTCGCCCGAGCTTT
AAATTCCGAGAAACGTTAAAATACCCAATATTGCCAATATATTTCGGGGC
CGATTGTTTTTTTGAATAGCAAGTTATTTTTTTTTGCTTTTAAGGATATG
TAACTAAATTGCCTCCGAGGTTTTGTAAATTGAAGTTCTGATTTGTTAGT
GGTCCAGAGATTTAAATCATATTAGCAACCACATTTTATCTATTTCTATT
TTTCTCAGTGAAAATTTTACTGCGAACACCAACCAACGAACGAAAACAAA
TTCTTATCTACCACGAAGCCACTCTAGAGGTATGTTTGTTGTAAATTTTT
CATTAATCAGAGGTACCCATCTGATTACTTAGAATACTAGTTTTTCAAGG
TGACGCGTGTGTTCTATCTATGGAACGTTTTGGAAGCCAAAAAATTACCT
CCTCCCCACTCATACGGCAGTGTTTAGACCCTCTTTTCAAATTTTTTTTT
GCAATTCTTCTCCTCGTCTATTTGAATAAGGATCAAAAATACTTTAATTT
AATCTCTGACAAGATTTTGATACTCTGCGCAAAGCTTTGATTTTTTATCG
GGATTTAGGATGAATATTAAATGAGCTCTCAAATGCGCTCTCAAATGCGG
TGGTTTGTTTGCTGAAGCAAAATAACCGCACACTTACTTCAATCATAAAC
ATAAATATTAGAACCCAGTTACTTTCGCTTTCATTCTTCGGGAAAAAGCA
AAGCGGTTTTTTTAGCTGAATAACTAGGCCAGATCATCACGCTCACCACA
TCCCTTTAAAGCAGCGAGTATGATGTGCACAGAATGGATGGTTTGTTATG
AGATGAGCTTTTATGACATGGTTTCAGCCCACTTTTCAGGTGCCCCCATT
GAGCATGGTGCCCCCAGCAATTTAGGTCCCCTTGAAAAATTGCTTTGAGT
TAGGTACCCCTATTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGGGGTAAAAAAAT
TCAATAATTTGAAATATTTTGAAATATTAGATTTGGAAAATATAACCAGC
CCCCAGAGCCTCCATCAAGACAGCTAGGTACCCTTTATGAATAGGTAACC
CTAAAGAATTGCAAGGCATTAGCCCCCCTCTACTAACCTGGCCTAGGTGC
CCTTCAGATTTCTGGGGGGGGGGCTGATACCATGTATGAAGATATTTGAT
ATTTGACACTGTACTGATTCTTGTCTAAACAAACAGTTCATTTCAAAATT
CCCTTTACACTTATAAAGTTAACCACTAGTAGAAGTAAGTACAAATATGA
TCAGAAGTATTGGAATGAAAAGACCATTCATGAATGTGAAACAAATTAAA
GTTCGGTGATTGTATTGACGTTATCTTTACAAACGTAGAGATGCCTCAAG
AACCCACTCGAACGAGCCAATTATAACATTACTACATAGCTTATTACTTT
TTCTTCAGCTGCCATCAACTGTTGTTGACATCGAGCGGTTACGGCAATTG
CCAGCCGTATCCGTGTATTTTTTCCACGTCCCTCCGTAGAAATGAGCTGC
CTCTATGTTGTTGTTTTCGAGATTATACTGCTTAAGAATCTTGAATAGTC
TTCCTCATTTAACATTTTTACTGTCATTGAACAAAAATCTATTCGCAGTG
TTGGAGTTACTGCGACGAGCGGTAAACATATTTTATTTGTTGCATTTTTT
TATGTGCGAGATCACATCTTAATTTGAATATTCGAAGGACCTCGTCATCG
GTTATGAAACAACCCTGATCAATCTCTGTTCTTCGTTTGAAACCACACCG
AATCATTTTACGAAACATTGCATTGTAGCAGGACCGAGTAGGTTGTTGTT
GTTAAATGTTGAGATTCCATGTCTGACATGAATAAGTCAGACAACTTCGT
ACAATCAAGTTTATTTTCAGCCACTGTAATTTGGAGATCAACTTCTGCAT
CTCCAATATTTGGTTTGTCATGATCAATGTCATTTCTAAGATACCGAATC
TTCTTCATACACCCTTGTCTCACAGCACTGGTGAAACTTTTTCCTTCAGC
GGGGATGAAAATTTCGATTGAAATCTCGATGGGAATAAAAATTCTATTGT
TCCATGGTTAAAAAATCCAGTGGGGATGGTTTTGGAGTACAATTTCTAAA
CAATGAATTTCGAATGGGGATGAAATCAAAGTCAATTTGTCAGTGGAGCT
GAAATTCTAGAGTATTTTTCCTACCGGGACGAAATGTTTGCCAAATTTTC
CAGTGGGGCTTGGGCCCCAGCGGGTCTGTGACACAAGGGTGTCTTCATAT
TTTCAATTGGTTTCTTATTCAAGTTTCCCGCGTCACTTCAAATAAACGTC
CCTCCTTGAAAAAAAAAAATTCAATAGACGCAAAGGGGTTTTAAATGGCC
TTCAAATACACGTTTGTTTTTATAAGAACATAATGCTTCGACGGCCAAAA
TACCAAGAACTACAAAACATTTTAAGGCTTTGTGCACCCTAAAACACTTA
TTTTCTTAGAAATATGGACAAAAATACTCACAAGTTGGTAAAATTGGCTT
AACACTCAATAACCTTTGACCCACTTTTACAGCTTTAAAAGTGCATATTT
TCACTCAAAGAAAACGAAAAGGCAAAACAAGGTTCCCAATCACTCTATCA
AAATTAACTTGTTTAAAGCTTATTTATTAAACACCCCCTCGAAAAAACCA
ACCCTCTTAAAGTTAAAAAAGTTTAATAAACGCCCAACGCCCGAAGTGTT
TATTCAAAGTAATACAGTATTGCACCATTGGGTTTAAAGCCCCGAATGGG
CTATAGAAGAATCTTCAAACTTTCTCACGCAAGAAAAAGTGAAGTCATGT
TTCTCTTGTGGTGAATTTTACTTTCAATCTGGCGTCTGTATGAAAACCAC
GCGGGTTCCCCGTTTTGGATGGGGAATAAGTGGCTTCATTTCTCTTTTAT
AAAATATCACATCATCCAGTATCCAACCAGGATTACTCCCGGTAGGATAA
AGTTGTTGTGATATTTCGGGACATTTGCGATCGTTATCCTAAAACAGCTA
TGTAATTTGTAAAATATCAGTGGATGAAATTGATGGACCCCTCAAAGTGT
TCGAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNGTTTCGAAGTTTGTTGAATATAATATGTTTCAGAGTTACATCAA
TGAGGATATTTTGTAAATGAAGTATTTTGTGGAGTATGTAAAAATATTTT
ATTTTAATCGGCTTTTGGAAAAATTCCAAGGCCAAGAGAGTTAAAAGTGA
GAATATGTTGAGTCTGTGTGAAAAATTGAAAATTAAAATAAGAAAGGAAC
CTTCTGTGCTCTGGAGGTGGAGTATGCACAATATTTGCATATTTATTTGG
TTGACTTGACGCGTTTTGGATGGGGAATAAGTGGCTTCATTTCTCATCTA
GGAGTTTCGTATCTAGCCCCTCCACGGCTTTGAAATCAATGGTATAGCAC
ATTATCCCGATAAGAGTAATCAAGCATTGTTTTTTTTTAAATTAATAGGA
TTTAGCAAGAGAAGTTTCGAAGCTTGGTTGGTCCAGTTCTCGTTACGAAT
TGATCAAATCGTTTCCACGGCAAAATCTTTCATCATTAGATCAAACAACC
ACATTAGAGAAGGCTGGTCTGCATAAACAGGAGACTATTTTCATACAAGA
TAGGTAACACTATAGATGAAATTTTTGTTCTTGTTATAATTAAGATTCAT
TTAAGGAATTGATTTGAGGCTATGAAGAACATTTCAATTATTGTGGCTAT
TCGGATTATATTTGGGGATTTTAGTTTGCGGTTCACTCAAATCAATCTGA
AATTGAGGAAAGTTTTGATGTTTTTTTCATCCTTTTTTAGGCTATTTATG
GTTCTTATTTTGTCTGAGCCAAAGTTCGAAAATCGATCCTTTGAGAGACC
ATTTTTTTAATTTTTAGCTCGAAATCATCAGATTTTATGACTCTTTAAGG
GAGTCAATTTTTGATATTTCGTATAATTTTGGGACCATTTCAGAGAATCA
ATTTCTAATTCATCGTTTTTTGTACCCGTTTGAGAGACTTTCGAGGGTTT
GAAAAAAAACGACTGCTAAGGCCCCCTGGGGGGTTTGATGCGTTACTCAA
CTTTTCAGTTTAATGGTTAGGCATCCATTGTAAAAATTTTGTACATAGAA
CTTATATATTATTTACTAGGTTTTTTATTTTGTCATATCAAAAAGATGTT
ACTTTACGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042584XLOC_042584Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068221-exon-scaffold_480-1575043694:18646..18673TCONS_00068221-exon-scaffold_480-1575043694:18646..18673Clytia hemisphaericaexon
TCONS_00068221-exon-scaffold_480-1575043694:17795..17865TCONS_00068221-exon-scaffold_480-1575043694:17795..17865Clytia hemisphaericaexon
TCONS_00068221-exon-scaffold_480-1575043694:12563..13275TCONS_00068221-exon-scaffold_480-1575043694:12563..13275Clytia hemisphaericaexon
TCONS_00068221-exon-scaffold_480-1510915933:18646..18673TCONS_00068221-exon-scaffold_480-1510915933:18646..18673Clytia hemisphaericaexon
TCONS_00068221-exon-scaffold_480-1510915933:17795..17865TCONS_00068221-exon-scaffold_480-1510915933:17795..17865Clytia hemisphaericaexon
TCONS_00068221-exon-scaffold_480-1510915933:12563..13275TCONS_00068221-exon-scaffold_480-1510915933:12563..13275Clytia hemisphaericaexon
TCONS_00068221-exon-scaffold_480-1491911889:18646..18673TCONS_00068221-exon-scaffold_480-1491911889:18646..18673Clytia hemisphaericaexon
TCONS_00068221-exon-scaffold_480-1491911889:17795..17865TCONS_00068221-exon-scaffold_480-1491911889:17795..17865Clytia hemisphaericaexon
TCONS_00068221-exon-scaffold_480-1491911889:12563..13275TCONS_00068221-exon-scaffold_480-1491911889:12563..13275Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_480supercontigscaffold_480:12563..18673 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0.0800812	0	0	0	0	0	0	0	0.0971198	0	0	0	0	0	0	0	0	0.254827	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068221 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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