TCONS_00068221 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068221
Unique NameTCONS_00068221
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length812

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068221 ID=TCONS_00068221|Name=TCONS_00068221|organism=Clytia hemisphaerica|type=transcript|length=812bp
ATCCTGGACGACCCTACTAAAGAAAAAGTGAAAATTTTACTGCGAACACC
AACCAACGAACGAAAACAAATTCTTATCTACCACGAAGCCACTCTAGAGG
ATTTAGCAAGAGAAGTTTCGAAGCTTGGTTGGTCCAGTTCTCGTTACGAA
TTGATCAAATCGTTTCCACGGCAAAATCTTTCATCATTAGATCAAACAAC
CACATTAGAGAAGGCTGGTCTGCATAAACAGGAGACTATTTTCATACAAG
ATAGGTAACActatagatgaaatttttgttctTGTTATAATTAAGATTCA
TTTAAGGAATTGATTTGAGGCTATGAAGAACATTTCAATTATTGTGGCTA
TTCGGATTATATTTGGGGATTTTAGTTTGCGGTTCACTCAAATCAATCTG
AAATTGAGGaaagttttgatgtttttttcatCCTTTTTTAGGCTATTTAT
GGTTCTTATTTTGTCtgagccaaagttcgaaaatcgatcCTTTGAGAgac
catttttttaatttttagctcGAAATCATCAGATTTTATGACTCTTTAAG
GGagtcaatttttgatatttcgtATAATTTTGGGACCATTTCAGAGAATC
AATTTCTAATTCATCGTTTTTTGTACCcgtttgagagactttcgagggtt
tGAAAAAAAACGACTGCTAAGGCCCCCTGGGGGGTTTGATGCGTTACTCA
ACTTTTCAGTTTAATGGTTAGGCATCCATTGTAAAAATTTTGTACATAGA
ACTTATATATTATTTACtaggttttttattttgtcatatCAAAAAGATGT
TACTTTACGAAT
Run BLAST on NCBI

transcript from alignment at scaffold_480:12563..18673-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068221 ID=TCONS_00068221|Name=TCONS_00068221|organism=Clytia hemisphaerica|type=transcript|length=6111bp|location=Sequence derived from alignment at scaffold_480:12563..18673- (Clytia hemisphaerica)
ATCCTGGACGACCCTACTAAAGAAAAAGGTTAGTCTTGTCTTACTTACCG CCAAAGTGTATAACTTTTCTATTTCCAATTTGCTTTTTCGGGATACTTTC GCTGATATTTTCGTCGTATACCAGCTAAAAAAAGTAAAGAGCCCTTTCAT AGTTATGGAATGAATGAATGAATGAATGAATGAATGACCTAAAACTTCTT TTTTTTTCTTCAAACTAACGGAAGCCCTGAACTTTTTCCGAGTGGCGAGG GTAAAGTTGTTTCGAGGAAGAGAAAATTTTGCGCTTTGACGGTATAGTCT AAAAACAGCTACAATCGGCGCCGAAATATTTGGCACAAAAGGGGAATTCC CTGAAAACTTTAAAACCGCAAGTGATTTTAAGTGCTTTGAAGCACGGTTT GAAAGTAGAGTTTTAACTCTTGAGTTTTAACATTACACTTAAAACTTGGA CCTTCACCTTAGGATCTCAGAATATAAAAGCTCAAAAATGTTCCAATTAG GCCGAGAATATAGCCTGGAAGCCACTTAACCCCTCCAAAATCAAAACAAT CCAATGAAGCAAAGTGGAAGTACTAAAACTGCAATTCTCGCCCGAGCTTT AAATTCCGAGAAACGTTAAAATACCCAATATTGCCAATATATTTCGGGGC CGATTGTTTTTTTGAATAGCAAGTTATTTTTTTTTGCTTTTAAGGATATG TAACTAAATTGCCTCCGAGGTTTTGTAAATTGAAGTTCTGATTTGTTAGT GGTCCAGAGATTTAAATCATATTAGCAACCACATTTTATCTATTTCTATT TTTCTCAGTGAAAATTTTACTGCGAACACCAACCAACGAACGAAAACAAA TTCTTATCTACCACGAAGCCACTCTAGAGGTATGTTTGTTGTAAATTTTT CATTAATCAGAGGTACCCATCTGATTACTTAGAATACTAGTTTTTCAAGG TGACGCGTGTGTTCTATCTATGGAACGTTTTGGAAGCCAAAAAATTACCT CCTCCCCACTCATACGGCAGTGTTTAGACCCTCTTTTCAAATTTTTTTTT GCAATTCTTCTCCTCGTCTATTTGAATAAGGATCAAAAATACTTTAATTT AATCTCTGACAAGATTTTGATACTCTGCGCAAAGCTTTGATTTTTTATCG GGATTTAGGATGAATATTAAATGAGCTCTCAAATGCGCTCTCAAATGCGG TGGTTTGTTTGCTGAAGCAAAATAACCGCACACTTACTTCAATCATAAAC ATAAATATTAGAACCCAGTTACTTTCGCTTTCATTCTTCGGGAAAAAGCA AAGCGGTTTTTTTAGCTGAATAACTAGGCCAGATCATCACGCTCACCACA TCCCTTTAAAGCAGCGAGTATGATGTGCACAGAATGGATGGTTTGTTATG AGATGAGCTTTTATGACATGGTTTCAGCCCACTTTTCAGGTGCCCCCATT GAGCATGGTGCCCCCAGCAATTTAGGTCCCCTTGAAAAATTGCTTTGAGT TAGGTACCCCTATTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGGGGTAAAAAAAT TCAATAATTTGAAATATTTTGAAATATTAGATTTGGAAAATATAACCAGC CCCCAGAGCCTCCATCAAGACAGCTAGGTACCCTTTATGAATAGGTAACC CTAAAGAATTGCAAGGCATTAGCCCCCCTCTACTAACCTGGCCTAGGTGC CCTTCAGATTTCTGGGGGGGGGGCTGATACCATGTATGAAGATATTTGAT ATTTGACACTGTACTGATTCTTGTCTAAACAAACAGTTCATTTCAAAATT CCCTTTACACTTATAAAGTTAACCACTAGTAGAAGTAAGTACAAATATGA TCAGAAGTATTGGAATGAAAAGACCATTCATGAATGTGAAACAAATTAAA GTTCGGTGATTGTATTGACGTTATCTTTACAAACGTAGAGATGCCTCAAG AACCCACTCGAACGAGCCAATTATAACATTACTACATAGCTTATTACTTT TTCTTCAGCTGCCATCAACTGTTGTTGACATCGAGCGGTTACGGCAATTG CCAGCCGTATCCGTGTATTTTTTCCACGTCCCTCCGTAGAAATGAGCTGC CTCTATGTTGTTGTTTTCGAGATTATACTGCTTAAGAATCTTGAATAGTC TTCCTCATTTAACATTTTTACTGTCATTGAACAAAAATCTATTCGCAGTG TTGGAGTTACTGCGACGAGCGGTAAACATATTTTATTTGTTGCATTTTTT TATGTGCGAGATCACATCTTAATTTGAATATTCGAAGGACCTCGTCATCG GTTATGAAACAACCCTGATCAATCTCTGTTCTTCGTTTGAAACCACACCG AATCATTTTACGAAACATTGCATTGTAGCAGGACCGAGTAGGTTGTTGTT GTTAAATGTTGAGATTCCATGTCTGACATGAATAAGTCAGACAACTTCGT ACAATCAAGTTTATTTTCAGCCACTGTAATTTGGAGATCAACTTCTGCAT CTCCAATATTTGGTTTGTCATGATCAATGTCATTTCTAAGATACCGAATC TTCTTCATACACCCTTGTCTCACAGCACTGGTGAAACTTTTTCCTTCAGC GGGGATGAAAATTTCGATTGAAATCTCGATGGGAATAAAAATTCTATTGT TCCATGGTTAAAAAATCCAGTGGGGATGGTTTTGGAGTACAATTTCTAAA CAATGAATTTCGAATGGGGATGAAATCAAAGTCAATTTGTCAGTGGAGCT GAAATTCTAGAGTATTTTTCCTACCGGGACGAAATGTTTGCCAAATTTTC CAGTGGGGCTTGGGCCCCAGCGGGTCTGTGACACAAGGGTGTCTTCATAT TTTCAATTGGTTTCTTATTCAAGTTTCCCGCGTCACTTCAAATAAACGTC CCTCCTTGAAAAAAAAAAATTCAATAGACGCAAAGGGGTTTTAAATGGCC TTCAAATACACGTTTGTTTTTATAAGAACATAATGCTTCGACGGCCAAAA TACCAAGAACTACAAAACATTTTAAGGCTTTGTGCACCCTAAAACACTTA TTTTCTTAGAAATATGGACAAAAATACTCACAAGTTGGTAAAATTGGCTT AACACTCAATAACCTTTGACCCACTTTTACAGCTTTAAAAGTGCATATTT TCACTCAAAGAAAACGAAAAGGCAAAACAAGGTTCCCAATCACTCTATCA AAATTAACTTGTTTAAAGCTTATTTATTAAACACCCCCTCGAAAAAACCA ACCCTCTTAAAGTTAAAAAAGTTTAATAAACGCCCAACGCCCGAAGTGTT TATTCAAAGTAATACAGTATTGCACCATTGGGTTTAAAGCCCCGAATGGG CTATAGAAGAATCTTCAAACTTTCTCACGCAAGAAAAAGTGAAGTCATGT TTCTCTTGTGGTGAATTTTACTTTCAATCTGGCGTCTGTATGAAAACCAC GCGGGTTCCCCGTTTTGGATGGGGAATAAGTGGCTTCATTTCTCTTTTAT AAAATATCACATCATCCAGTATCCAACCAGGATTACTCCCGGTAGGATAA AGTTGTTGTGATATTTCGGGACATTTGCGATCGTTATCCTAAAACAGCTA TGTAATTTGTAAAATATCAGTGGATGAAATTGATGGACCCCTCAAAGTGT TCGAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNGTTTCGAAGTTTGTTGAATATAATATGTTTCAGAGTTACATCAA TGAGGATATTTTGTAAATGAAGTATTTTGTGGAGTATGTAAAAATATTTT ATTTTAATCGGCTTTTGGAAAAATTCCAAGGCCAAGAGAGTTAAAAGTGA GAATATGTTGAGTCTGTGTGAAAAATTGAAAATTAAAATAAGAAAGGAAC CTTCTGTGCTCTGGAGGTGGAGTATGCACAATATTTGCATATTTATTTGG TTGACTTGACGCGTTTTGGATGGGGAATAAGTGGCTTCATTTCTCATCTA GGAGTTTCGTATCTAGCCCCTCCACGGCTTTGAAATCAATGGTATAGCAC ATTATCCCGATAAGAGTAATCAAGCATTGTTTTTTTTTAAATTAATAGGA TTTAGCAAGAGAAGTTTCGAAGCTTGGTTGGTCCAGTTCTCGTTACGAAT TGATCAAATCGTTTCCACGGCAAAATCTTTCATCATTAGATCAAACAACC ACATTAGAGAAGGCTGGTCTGCATAAACAGGAGACTATTTTCATACAAGA TAGGTAACACTATAGATGAAATTTTTGTTCTTGTTATAATTAAGATTCAT TTAAGGAATTGATTTGAGGCTATGAAGAACATTTCAATTATTGTGGCTAT TCGGATTATATTTGGGGATTTTAGTTTGCGGTTCACTCAAATCAATCTGA AATTGAGGAAAGTTTTGATGTTTTTTTCATCCTTTTTTAGGCTATTTATG GTTCTTATTTTGTCTGAGCCAAAGTTCGAAAATCGATCCTTTGAGAGACC ATTTTTTTAATTTTTAGCTCGAAATCATCAGATTTTATGACTCTTTAAGG GAGTCAATTTTTGATATTTCGTATAATTTTGGGACCATTTCAGAGAATCA ATTTCTAATTCATCGTTTTTTGTACCCGTTTGAGAGACTTTCGAGGGTTT GAAAAAAAACGACTGCTAAGGCCCCCTGGGGGGTTTGATGCGTTACTCAA CTTTTCAGTTTAATGGTTAGGCATCCATTGTAAAAATTTTGTACATAGAA CTTATATATTATTTACTAGGTTTTTTATTTTGTCATATCAAAAAGATGTT ACTTTACGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042584XLOC_042584Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068221-exon-scaffold_480-1575043694:18646..18673TCONS_00068221-exon-scaffold_480-1575043694:18646..18673Clytia hemisphaericaexon
TCONS_00068221-exon-scaffold_480-1575043694:17795..17865TCONS_00068221-exon-scaffold_480-1575043694:17795..17865Clytia hemisphaericaexon
TCONS_00068221-exon-scaffold_480-1575043694:12563..13275TCONS_00068221-exon-scaffold_480-1575043694:12563..13275Clytia hemisphaericaexon
TCONS_00068221-exon-scaffold_480-1510915933:18646..18673TCONS_00068221-exon-scaffold_480-1510915933:18646..18673Clytia hemisphaericaexon
TCONS_00068221-exon-scaffold_480-1510915933:17795..17865TCONS_00068221-exon-scaffold_480-1510915933:17795..17865Clytia hemisphaericaexon
TCONS_00068221-exon-scaffold_480-1510915933:12563..13275TCONS_00068221-exon-scaffold_480-1510915933:12563..13275Clytia hemisphaericaexon
TCONS_00068221-exon-scaffold_480-1491911889:18646..18673TCONS_00068221-exon-scaffold_480-1491911889:18646..18673Clytia hemisphaericaexon
TCONS_00068221-exon-scaffold_480-1491911889:17795..17865TCONS_00068221-exon-scaffold_480-1491911889:17795..17865Clytia hemisphaericaexon
TCONS_00068221-exon-scaffold_480-1491911889:12563..13275TCONS_00068221-exon-scaffold_480-1491911889:12563..13275Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_480supercontigscaffold_480:12563..18673 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0 0 0 0 0.0800812 0 0 0 0 0 0 0 0.0971198 0 0 0 0 0 0 0 0 0.254827 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068221 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top