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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068180 ID=TCONS_00068180|Name=TCONS_00068180|organism=Clytia hemisphaerica|type=transcript|length=3525bp TTAGCACTTCTCTCATTCATTCTCAGTCTCGTCTCGACTGCAGTCCAACC ACGATGATGACGAATTAATTATAGATAATAAGCCAACAGGAAAAAGATGA AAACGTCTTAATAAAAGTCATTGATTCTCTAAAAGTTGTAACTGGtaaca aaacgaaaacaaataaaatagaataattATTTACAAATCAATACAGAAAA TTTACCCTACTAAATTATGCATCACAACACCTAAACGTtctataaaaata tctaaataatAATTAtcccaaaatttcattttatatactGATTCTATGAT aatattcattcatttttaaattgaaaaaaaaagccaAACTTGGTCAATGT TCCCCTTAAAGCGCTTACTAATTTCTATTAGAAATGGAGCTTCAAATTGT ACAGCTTATTCTCTAGTGCATTTTGGAAACTGAATCAAAGtatatttcat ttcaatatAGTGACGTTATTGCACTGATGCAAGATAGGAAGTGAAACTAA TTTGCTGCAACTTAGTTCGAATTGCAGAGAGTTTGagcttttaaaaagtt taataataattcCCTGATAAGCAGTGAGAATTAGTTAAATTATACAAAGG TTCGAGTAATGGAGGTTGAAACTAGCAAGAGACCCTCTTATGTATAAAtg taaaaatgcaaaaattcatTTGCTAACtgatcaaaaacaaataaaaagat ttcatttgattttccatcctttccatttttcaaaacaCGAACCACTTGAT ATCAATTTTACCATGGATGCGTCAGAATAAGTTTGAAGAAATTCGGGTAC AGAATGGTCAccatcttttgaaaaatattccaacgTTAAAGGTAACAGAG GATAACCTTCACACGACAACTCAGTACTGCTGAACCCATATTTCCGTTTA ATATGGATAGGGTTGACATGCTTGTTCAGTAATTCTTGTTTCTCGCTCAT CACTTCAATGATTAAGGAATACCCAACAGAAATCATTTGACAATTTGACA ATGTgggttgaaaatgaaaaatgtcaTCTTTGAGCGGTATAACTTCGTTT GACACAATCTTACTTTTGGGAAGAACTAACAACAAAATTGGTGTACTGAC TTCAATATATCTTAAAATCTTTccagtttttgaattttctgttTGTTGTA CAAGCAATATTCGGACAGTCAATTGCTTCTTGGTCTTATTTTCAACATGA ATAGTTAGATCTACATTGTCTTTGTGTTTGAAAGCTGGTTTATCAAGGGT CACTGATACAGAATAagatttcttggaaaattgactGATTGATTTCGGTA TTTTCCCATTATCGTGTACAACAATTGGTAGCCTGGTATACAAGGAAgct ttttttccattcaattgtAAATTAAAAACGTCAGCTTTCAATTCATAGGA TACCATGACATCATCAGAATTAAATGAGGGAGGTAATAACTTCTTTTCTT TTGCCAAATTGAATTCAAATTCCACAACGATACCAGATGAGGGACCTTTC AAAATGACTGGAGAAGATTTCTTGTCATTGTTCCCGTGTAGAATctgact tttgaataaaaacatctcCCCATTTCTATGAATAGTACCTGTATTTTTAT ACTGGCACGCACCAACAAGTACGATCAAGAGTTTATCGAAAACAACTTTG TCACTGATATCAGGGAAGGATAAATATACAAAACCTTTGATTATATCAGT GCTGGTGTAAGCTTTAAAGGATTCTGAGATGATGGTTAGAATAGCCTTCA TTCCACCTACTTGACCTTTTTTAACAGTCAACCGTTTGTTCTCATAACAT TGTTTCATTGGAATGTATGATTGCAGCCCATCAGCTTTCAATTCTTTCAC AGTCACAGTGAGCGGCAATAATGGTAAACCTTGATCTGAGTAGACTCTGA GGTATCGTTTAAACAATCCATCATCATTTCTTTCAATGATTATGGGTATG AAAAGTTCATAAGATTGACCTTTAAACTGAGCCAAAACACTAACAAGGTA TTTGACTTTTATGTGATTGCTATTATGTATTGAAGGCTGAGAAGTAAATA TTGTATCGTCCAAAAGAAATGAATATTTGGAAAGAAGAATGCCAGTTACG GGGTCAGACACAAACTCTCCGATGAATTCTTTGACAATTACAGTTTCAGT TCGCTTATCAGCAAAACACAAGACTTGCTGAATCTGAAAGTTCATCAAAA CTGTTGAAGAACTATTCAGATCGAGATAAAATTCAATAGCCACACTTTCC CCAGTGCTGAAAACAGTCTTTTTCAGACTTGCATAAAATGTCATTAAATT ATTATTGATAGCTTCTTGAAGTTGTGCTGCTGGTTCTTTGATAACATTTG GCTCCTCAATAACTTCAACAGGTAGATTGACGTTCAGATCACAAAGTTCA CCACAAAGATTCAGTTGAACCAACTCAGCTTTTACCTCATAACAAATTGT GACATCATTAGAATTGTAGGAAGAAGCCAAAGGAGGTGGTAATTCTATCA TAAAAGGTACTTTCAATGGCAAAGACTGATTTAACTGAtgatgaaaagtt gaaaaattctcAGAATCATCTTTAAGAATAAGAACTTGTTCGGTAATGAG ATTTGTAACAACATTCTTTTTACTTGGAGTGATCAGATGAGGTTGACTGA TACTTTGTCGAAGTGATATTTTTAAAGAGTCTAAATTTAATTCTTCACCA GTGTCATTGAAATTAATGTACACAAATCCTTTGATGCTTTCTCCAGCTCT AAACAGTTGGCGATCTTCGTCTATAGAGATTGTAAACATGGCATGTTCAG CTTTTGTATTACTGACTGGCCAAACAGTCTTCTGCGACATATTTGTATCA TATCTTTTATTTCTTTaacaaattttctttgtattcaTTCAACTGTCAAA CTTTTCCATCTAGATAGAAAACAAGAGAAAATTTGTCACAGCTTGCGTTA TTGCTAAAAAGGGTGAGAGGGGGTAAAATGAGGTAACAGGGGATAACACA AGGCAACAGGGGGTAACAAGTTGAAAATGGTGACTCTAAGAggtcaaaat tttaatgatgatgatggaaaTAATGGTGCAACCAGGTGCAACTTGAAGCA GCCTCTTATTTTGAAGGTGTGAtagttataaaaaaattaaaataggaGGG GAATATTTCTCATGCACGTTTATTTttaataaggaaccttaacttggctc caagcctggagttccttattttgccagagagtttcaatttcaaagttcct tatcgagttccttataggccgtggccagtggatgattaaaaatgttcaaa aaaaaagaacaaattcaaaatgtctttgACCAAGCTTTGGCAattgattt tggtcaatttgagggtgctgaatccgaatttgaatgttaccaagcgtGAA AACCagcagtttttgcgtaatttgcgattttttgcgtttccaggcaaaat tgcaaggcttgaaatatcatgattttttttttgggggggtcttcaaatta aaaaaagacctatatctcgtgatag Run BLAST on NCBI protein sequence of TCONS_00068180-protein >TCONS_00068180-protein ID=TCONS_00068180-protein|Name=TCONS_00068180-protein|organism=Clytia hemisphaerica|type=polypeptide|length=712bp
MSQKTVWPVSNTKAEHAMFTISIDEDRQLFRAGESIKGFVYINFNDTGEE LNLDSLKISLRQSISQPHLITPSKKNVVTNLITEQVLILKDDSENFSTFH HQLNQSLPLKVPFMIELPPPLASSYNSNDVTICYEVKAELVQLNLCGELC DLNVNLPVEVIEEPNVIKEPAAQLQEAINNNLMTFYASLKKTVFSTGESV AIEFYLDLNSSSTVLMNFQIQQVLCFADKRTETVIVKEFIGEFVSDPVTG ILLSKYSFLLDDTIFTSQPSIHNSNHIKVKYLVSVLAQFKGQSYELFIPI IIERNDDGLFKRYLRVYSDQGLPLLPLTVTVKELKADGLQSYIPMKQCYE NKRLTVKKGQVGGMKAILTIISESFKAYTSTDIIKGFVYLSFPDISDKVV FDKLLIVLVGACQYKNTGTIHRNGEMFLFKSQILHGNNDKKSSPVILKGP SSGIVVEFEFNLAKEKKLLPPSFNSDDVMVSYELKADVFNLQLNGKKASL YTRLPIVVHDNGKIPKSISQFSKKSYSVSVTLDKPAFKHKDNVDLTIHVE NKTKKQLTVRILLVQQTENSKTGKILRYIEVSTPILLLVLPKSKIVSNEV IPLKDDIFHFQPTLSNCQMISVGYSLIIEVMSEKQELLNKHVNPIHIKRK YGFSSTELSCEGYPLLPLTLEYFSKDGDHSVPEFLQTYSDASMVKLISSG SCFEKWKGWKIK Run BLAST on NCBI transcript from alignment at scaffold_48:63149..66673 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068180 ID=TCONS_00068180|Name=TCONS_00068180|organism=Clytia hemisphaerica|type=transcript|length=3525bp|location=Sequence derived from alignment at scaffold_48:63149..66673 (Clytia hemisphaerica) ctatcacgagatataggtctttttttaatttgaagacccccccaaaaaaa
aaatcatgatatttcaagccttgcaattttgcctggaaacgcaaaaaatc
gcaaattacgcaaaaactgctGGTTTTCacgcttggtaacattcaaattc
ggattcagcaccctcaaattgaccaaaatcaatTGCCAAAGCTTGGTcaa
agacattttgaatttgttctttttttttgaacatttttaatcatccactg
gccacggcctataaggaactcgataaggaactttgaaattgaaactctct
ggcaaaataaggaactccaggcttggagccaagttaaggttccttattaa
AAATAAACGTGCATGAGAAATATTCCCCtcctattttaatttttttataa
ctaTCACACCTTCAAAATAAGAGGCTGCTTCAAGTTGCACCTGGTTGCAC
CATTAtttccatcatcatcattaaaattttgaccTCTTAGAGTCACCATT
TTCAACTTGTTACCCCCTGTTGCCTTGTGTTATCCCCTGTTACCTCATTT
TACCCCCTCTCACCCTTTTTAGCAATAACGCAAGCTGTGACAAATTTTCT
CTTGTTTTCTATCTAGATGGAAAAGTTTGACAGTTGAAtgaatacaaaga
aaatttgttAAAGAAATAAAAGATATGATACAAATATGTCGCAGAAGACT
GTTTGGCCAGTCAGTAATACAAAAGCTGAACATGCCATGTTTACAATCTC
TATAGACGAAGATCGCCAACTGTTTAGAGCTGGAGAAAGCATCAAAGGAT
TTGTGTACATTAATTTCAATGACACTGGTGAAGAATTAAATTTAGACTCT
TTAAAAATATCACTTCGACAAAGTATCAGTCAACCTCATCTGATCACTCC
AAGTAAAAAGAATGTTGTTACAAATCTCATTACCGAACAAGTTCTTATTC
TTAAAGATGATTCTgagaatttttcaacttttcatcaTCAGTTAAATCAG
TCTTTGCCATTGAAAGTACCTTTTATGATAGAATTACCACCTCCTTTGGC
TTCTTCCTACAATTCTAATGATGTCACAATTTGTTATGAGGTAAAAGCTG
AGTTGGTTCAACTGAATCTTTGTGGTGAACTTTGTGATCTGAACGTCAAT
CTACCTGTTGAAGTTATTGAGGAGCCAAATGTTATCAAAGAACCAGCAGC
ACAACTTCAAGAAGCTATCAATAATAATTTAATGACATTTTATGCAAGTC
TGAAAAAGACTGTTTTCAGCACTGGGGAAAGTGTGGCTATTGAATTTTAT
CTCGATCTGAATAGTTCTTCAACAGTTTTGATGAACTTTCAGATTCAGCA
AGTCTTGTGTTTTGCTGATAAGCGAACTGAAACTGTAATTGTCAAAGAAT
TCATCGGAGAGTTTGTGTCTGACCCCGTAACTGGCATTCTTCTTTCCAAA
TATTCATTTCTTTTGGACGATACAATATTTACTTCTCAGCCTTCAATACA
TAATAGCAATCACATAAAAGTCAAATACCTTGTTAGTGTTTTGGCTCAGT
TTAAAGGTCAATCTTATGAACTTTTCATACCCATAATCATTGAAAGAAAT
GATGATGGATTGTTTAAACGATACCTCAGAGTCTACTCAGATCAAGGTTT
ACCATTATTGCCGCTCACTGTGACTGTGAAAGAATTGAAAGCTGATGGGC
TGCAATCATACATTCCAATGAAACAATGTTATGAGAACAAACGGTTGACT
GTTAAAAAAGGTCAAGTAGGTGGAATGAAGGCTATTCTAACCATCATCTC
AGAATCCTTTAAAGCTTACACCAGCACTGATATAATCAAAGGTTTTGTAT
ATTTATCCTTCCCTGATATCAGTGACAAAGTTGTTTTCGATAAACTCTTG
ATCGTACTTGTTGGTGCGTGCCAGTATAAAAATACAGGTACTATTCATAG
AAATGGGgagatgtttttattcaaaagtcagATTCTACACGGGAACAATG
ACAAGAAATCTTCTCCAGTCATTTTGAAAGGTCCCTCATCTGGTATCGTT
GTGGAATTTGAATTCAATTTGGCAAAAGAAAAGAAGTTATTACCTCCCTC
ATTTAATTCTGATGATGTCATGGTATCCTATGAATTGAAAGCTGACGTTT
TTAATTTacaattgaatggaaaaaaagcTTCCTTGTATACCAGGCTACCA
ATTGTTGTACACGATAATGGGAAAATACCGAAATCAATCagtcaattttc
caagaaatctTATTCTGTATCAGTGACCCTTGATAAACCAGCTTTCAAAC
ACAAAGACAATGTAGATCTAACTATTCATGTTGAAAATAAGACCAAGAAG
CAATTGACTGTCCGAATATTGCTTGTACAACAaacagaaaattcaaaaac
tggAAAGATTTTAAGATATATTGAAGTCAGTACACCAATTTTGTTGTTAG
TTCTTCCCAAAAGTAAGATTGTGTCAAACGAAGTTATACCGCTCAAAGAt
gacatttttcattttcaacccACATTGTCAAATTGTCAAATGATTTCTGT
TGGGTATTCCTTAATCATTGAAGTGATGAGCGAGAAACAAGAATTACTGA
ACAAGCATGTCAACCCTATCCATATTAAACGGAAATATGGGTTCAGCAGT
ACTGAGTTGTCGTGTGAAGGTTATCCTCTGTTACCTTTAAcgttggaata
tttttcaaaagatggTGACCATTCTGTACCCGAATTTCTTCAAACTTATT
CTGACGCATCCATGGTAAAATTGATATCAAGTGGTTCGtgttttgaaaaa
tggaaaggatggaaaatcaaatgaaatctttttatttgtttttgatcaGT
TAGCAAatgaatttttgcatttttacaTTTATACATAAGAGGGTCTCTTG
CTAGTTTCAACCTCCATTACTCGAACCTTTGTATAATTTAACTAATTCTC
ACTGCTTATCAGGgaattattattaaactttttaaaagctCAAACTCTCT
GCAATTCGAACTAAGTTGCAGCAAATTAGTTTCACTTCCTATCTTGCATC
AGTGCAATAACGTCACTatattgaaatgaaatataCTTTGATTCAGTTTC
CAAAATGCACTAGAGAATAAGCTGTACAATTTGAAGCTCCATTTCTAATA
GAAATTAGTAAGCGCTTTAAGGGGAACATTGACCAAGTTtggcttttttt
ttcaatttaaaaatgaatgaatattATCATAGAATCagtatataaaatga
aattttgggaTAATTattatttagatatttttatagaACGTTTAGGTGTT
GTGATGCATAATTTAGTAGGGTAAATTTTCTGTATTGATTTGTAAATaat
tattctattttatttgttttcgttttgttaCCAGTTACAACTTTTAGAGA
ATCAATGACTTTTATTAAGACGTTTTCATCTTTTTCCTGTTGGCTTATTA
TCTATAATTAATTCGTCATCATCGTGGTTGGACTGCAGTCGAGACGAGAC
TGAGAATGAATGAGAGAAGTGCTAA Coding sequence (CDS) from alignment at scaffold_48:63149..66673 >TCONS_00068180 ID=TCONS_00068180|Name=TCONS_00068180|organism=Clytia hemisphaerica|type=CDS|length=2139bp|location=Sequence derived from alignment at scaffold_48:63149..66673 (Clytia hemisphaerica) ATGTCGCAGAAGACTGTTTGGCCAGTCAGTAATACAAAAGCTGAACATGC CATGTTTACAATCTCTATAGACGAAGATCGCCAACTGTTTAGAGCTGGAG AAAGCATCAAAGGATTTGTGTACATTAATTTCAATGACACTGGTGAAGAA TTAAATTTAGACTCTTTAAAAATATCACTTCGACAAAGTATCAGTCAACC TCATCTGATCACTCCAAGTAAAAAGAATGTTGTTACAAATCTCATTACCG AACAAGTTCTTATTCTTAAAGATGATTCTgagaatttttcaacttttcat caTCAGTTAAATCAGTCTTTGCCATTGAAAGTACCTTTTATGATAGAATT ACCACCTCCTTTGGCTTCTTCCTACAATTCTAATGATGTCACAATTTGTT ATGAGGTAAAAGCTGAGTTGGTTCAACTGAATCTTTGTGGTGAACTTTGT GATCTGAACGTCAATCTACCTGTTGAAGTTATTGAGGAGCCAAATGTTAT CAAAGAACCAGCAGCACAACTTCAAGAAGCTATCAATAATAATTTAATGA CATTTTATGCAAGTCTGAAAAAGACTGTTTTCAGCACTGGGGAAAGTGTG GCTATTGAATTTTATCTCGATCTGAATAGTTCTTCAACAGTTTTGATGAA CTTTCAGATTCAGCAAGTCTTGTGTTTTGCTGATAAGCGAACTGAAACTG TAATTGTCAAAGAATTCATCGGAGAGTTTGTGTCTGACCCCGTAACTGGC ATTCTTCTTTCCAAATATTCATTTCTTTTGGACGATACAATATTTACTTC TCAGCCTTCAATACATAATAGCAATCACATAAAAGTCAAATACCTTGTTA GTGTTTTGGCTCAGTTTAAAGGTCAATCTTATGAACTTTTCATACCCATA ATCATTGAAAGAAATGATGATGGATTGTTTAAACGATACCTCAGAGTCTA CTCAGATCAAGGTTTACCATTATTGCCGCTCACTGTGACTGTGAAAGAAT TGAAAGCTGATGGGCTGCAATCATACATTCCAATGAAACAATGTTATGAG AACAAACGGTTGACTGTTAAAAAAGGTCAAGTAGGTGGAATGAAGGCTAT TCTAACCATCATCTCAGAATCCTTTAAAGCTTACACCAGCACTGATATAA TCAAAGGTTTTGTATATTTATCCTTCCCTGATATCAGTGACAAAGTTGTT TTCGATAAACTCTTGATCGTACTTGTTGGTGCGTGCCAGTATAAAAATAC AGGTACTATTCATAGAAATGGGgagatgtttttattcaaaagtcagATTC TACACGGGAACAATGACAAGAAATCTTCTCCAGTCATTTTGAAAGGTCCC TCATCTGGTATCGTTGTGGAATTTGAATTCAATTTGGCAAAAGAAAAGAA GTTATTACCTCCCTCATTTAATTCTGATGATGTCATGGTATCCTATGAAT TGAAAGCTGACGTTTTTAATTTacaattgaatggaaaaaaagcTTCCTTG TATACCAGGCTACCAATTGTTGTACACGATAATGGGAAAATACCGAAATC AATCagtcaattttccaagaaatctTATTCTGTATCAGTGACCCTTGATA AACCAGCTTTCAAACACAAAGACAATGTAGATCTAACTATTCATGTTGAA AATAAGACCAAGAAGCAATTGACTGTCCGAATATTGCTTGTACAACAaac agaaaattcaaaaactggAAAGATTTTAAGATATATTGAAGTCAGTACAC CAATTTTGTTGTTAGTTCTTCCCAAAAGTAAGATTGTGTCAAACGAAGTT ATACCGCTCAAAGAtgacatttttcattttcaacccACATTGTCAAATTG TCAAATGATTTCTGTTGGGTATTCCTTAATCATTGAAGTGATGAGCGAGA AACAAGAATTACTGAACAAGCATGTCAACCCTATCCATATTAAACGGAAA TATGGGTTCAGCAGTACTGAGTTGTCGTGTGAAGGTTATCCTCTGTTACC TTTAAcgttggaatatttttcaaaagatggTGACCATTCTGTACCCGAAT TTCTTCAAACTTATTCTGACGCATCCATGGTAAAATTGATATCAAGTGGT TCGtgttttgaaaaatggaaaggatggaaaatcaaatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00068180-exon-scaffold_48-1491911889:63149..66673 | TCONS_00068180-exon-scaffold_48-1491911889:63149..66673 | Clytia hemisphaerica | exon |
TCONS_00068180-exon-scaffold_48-1510915933:63149..66673 | TCONS_00068180-exon-scaffold_48-1510915933:63149..66673 | Clytia hemisphaerica | exon |
TCONS_00068180-exon-scaffold_48-1575043694:63149..66673 | TCONS_00068180-exon-scaffold_48-1575043694:63149..66673 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_48 | supercontig | scaffold_48:63149..66673 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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