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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068180 ID=TCONS_00068180|Name=TCONS_00068180|organism=Clytia hemisphaerica|type=transcript|length=3525bp
TTAGCACTTCTCTCATTCATTCTCAGTCTCGTCTCGACTGCAGTCCAACC
ACGATGATGACGAATTAATTATAGATAATAAGCCAACAGGAAAAAGATGA
AAACGTCTTAATAAAAGTCATTGATTCTCTAAAAGTTGTAACTGGtaaca
aaacgaaaacaaataaaatagaataattATTTACAAATCAATACAGAAAA
TTTACCCTACTAAATTATGCATCACAACACCTAAACGTtctataaaaata
tctaaataatAATTAtcccaaaatttcattttatatactGATTCTATGAT
aatattcattcatttttaaattgaaaaaaaaagccaAACTTGGTCAATGT
TCCCCTTAAAGCGCTTACTAATTTCTATTAGAAATGGAGCTTCAAATTGT
ACAGCTTATTCTCTAGTGCATTTTGGAAACTGAATCAAAGtatatttcat
ttcaatatAGTGACGTTATTGCACTGATGCAAGATAGGAAGTGAAACTAA
TTTGCTGCAACTTAGTTCGAATTGCAGAGAGTTTGagcttttaaaaagtt
taataataattcCCTGATAAGCAGTGAGAATTAGTTAAATTATACAAAGG
TTCGAGTAATGGAGGTTGAAACTAGCAAGAGACCCTCTTATGTATAAAtg
taaaaatgcaaaaattcatTTGCTAACtgatcaaaaacaaataaaaagat
ttcatttgattttccatcctttccatttttcaaaacaCGAACCACTTGAT
ATCAATTTTACCATGGATGCGTCAGAATAAGTTTGAAGAAATTCGGGTAC
AGAATGGTCAccatcttttgaaaaatattccaacgTTAAAGGTAACAGAG
GATAACCTTCACACGACAACTCAGTACTGCTGAACCCATATTTCCGTTTA
ATATGGATAGGGTTGACATGCTTGTTCAGTAATTCTTGTTTCTCGCTCAT
CACTTCAATGATTAAGGAATACCCAACAGAAATCATTTGACAATTTGACA
ATGTgggttgaaaatgaaaaatgtcaTCTTTGAGCGGTATAACTTCGTTT
GACACAATCTTACTTTTGGGAAGAACTAACAACAAAATTGGTGTACTGAC
TTCAATATATCTTAAAATCTTTccagtttttgaattttctgttTGTTGTA
CAAGCAATATTCGGACAGTCAATTGCTTCTTGGTCTTATTTTCAACATGA
ATAGTTAGATCTACATTGTCTTTGTGTTTGAAAGCTGGTTTATCAAGGGT
CACTGATACAGAATAagatttcttggaaaattgactGATTGATTTCGGTA
TTTTCCCATTATCGTGTACAACAATTGGTAGCCTGGTATACAAGGAAgct
ttttttccattcaattgtAAATTAAAAACGTCAGCTTTCAATTCATAGGA
TACCATGACATCATCAGAATTAAATGAGGGAGGTAATAACTTCTTTTCTT
TTGCCAAATTGAATTCAAATTCCACAACGATACCAGATGAGGGACCTTTC
AAAATGACTGGAGAAGATTTCTTGTCATTGTTCCCGTGTAGAATctgact
tttgaataaaaacatctcCCCATTTCTATGAATAGTACCTGTATTTTTAT
ACTGGCACGCACCAACAAGTACGATCAAGAGTTTATCGAAAACAACTTTG
TCACTGATATCAGGGAAGGATAAATATACAAAACCTTTGATTATATCAGT
GCTGGTGTAAGCTTTAAAGGATTCTGAGATGATGGTTAGAATAGCCTTCA
TTCCACCTACTTGACCTTTTTTAACAGTCAACCGTTTGTTCTCATAACAT
TGTTTCATTGGAATGTATGATTGCAGCCCATCAGCTTTCAATTCTTTCAC
AGTCACAGTGAGCGGCAATAATGGTAAACCTTGATCTGAGTAGACTCTGA
GGTATCGTTTAAACAATCCATCATCATTTCTTTCAATGATTATGGGTATG
AAAAGTTCATAAGATTGACCTTTAAACTGAGCCAAAACACTAACAAGGTA
TTTGACTTTTATGTGATTGCTATTATGTATTGAAGGCTGAGAAGTAAATA
TTGTATCGTCCAAAAGAAATGAATATTTGGAAAGAAGAATGCCAGTTACG
GGGTCAGACACAAACTCTCCGATGAATTCTTTGACAATTACAGTTTCAGT
TCGCTTATCAGCAAAACACAAGACTTGCTGAATCTGAAAGTTCATCAAAA
CTGTTGAAGAACTATTCAGATCGAGATAAAATTCAATAGCCACACTTTCC
CCAGTGCTGAAAACAGTCTTTTTCAGACTTGCATAAAATGTCATTAAATT
ATTATTGATAGCTTCTTGAAGTTGTGCTGCTGGTTCTTTGATAACATTTG
GCTCCTCAATAACTTCAACAGGTAGATTGACGTTCAGATCACAAAGTTCA
CCACAAAGATTCAGTTGAACCAACTCAGCTTTTACCTCATAACAAATTGT
GACATCATTAGAATTGTAGGAAGAAGCCAAAGGAGGTGGTAATTCTATCA
TAAAAGGTACTTTCAATGGCAAAGACTGATTTAACTGAtgatgaaaagtt
gaaaaattctcAGAATCATCTTTAAGAATAAGAACTTGTTCGGTAATGAG
ATTTGTAACAACATTCTTTTTACTTGGAGTGATCAGATGAGGTTGACTGA
TACTTTGTCGAAGTGATATTTTTAAAGAGTCTAAATTTAATTCTTCACCA
GTGTCATTGAAATTAATGTACACAAATCCTTTGATGCTTTCTCCAGCTCT
AAACAGTTGGCGATCTTCGTCTATAGAGATTGTAAACATGGCATGTTCAG
CTTTTGTATTACTGACTGGCCAAACAGTCTTCTGCGACATATTTGTATCA
TATCTTTTATTTCTTTaacaaattttctttgtattcaTTCAACTGTCAAA
CTTTTCCATCTAGATAGAAAACAAGAGAAAATTTGTCACAGCTTGCGTTA
TTGCTAAAAAGGGTGAGAGGGGGTAAAATGAGGTAACAGGGGATAACACA
AGGCAACAGGGGGTAACAAGTTGAAAATGGTGACTCTAAGAggtcaaaat
tttaatgatgatgatggaaaTAATGGTGCAACCAGGTGCAACTTGAAGCA
GCCTCTTATTTTGAAGGTGTGAtagttataaaaaaattaaaataggaGGG
GAATATTTCTCATGCACGTTTATTTttaataaggaaccttaacttggctc
caagcctggagttccttattttgccagagagtttcaatttcaaagttcct
tatcgagttccttataggccgtggccagtggatgattaaaaatgttcaaa
aaaaaagaacaaattcaaaatgtctttgACCAAGCTTTGGCAattgattt
tggtcaatttgagggtgctgaatccgaatttgaatgttaccaagcgtGAA
AACCagcagtttttgcgtaatttgcgattttttgcgtttccaggcaaaat
tgcaaggcttgaaatatcatgattttttttttgggggggtcttcaaatta
aaaaaagacctatatctcgtgatag Run BLAST on NCBI protein sequence of TCONS_00068180-protein >TCONS_00068180-protein ID=TCONS_00068180-protein|Name=TCONS_00068180-protein|organism=Clytia hemisphaerica|type=polypeptide|length=712bp
MSQKTVWPVSNTKAEHAMFTISIDEDRQLFRAGESIKGFVYINFNDTGEE
LNLDSLKISLRQSISQPHLITPSKKNVVTNLITEQVLILKDDSENFSTFH
HQLNQSLPLKVPFMIELPPPLASSYNSNDVTICYEVKAELVQLNLCGELC
DLNVNLPVEVIEEPNVIKEPAAQLQEAINNNLMTFYASLKKTVFSTGESV
AIEFYLDLNSSSTVLMNFQIQQVLCFADKRTETVIVKEFIGEFVSDPVTG
ILLSKYSFLLDDTIFTSQPSIHNSNHIKVKYLVSVLAQFKGQSYELFIPI
IIERNDDGLFKRYLRVYSDQGLPLLPLTVTVKELKADGLQSYIPMKQCYE
NKRLTVKKGQVGGMKAILTIISESFKAYTSTDIIKGFVYLSFPDISDKVV
FDKLLIVLVGACQYKNTGTIHRNGEMFLFKSQILHGNNDKKSSPVILKGP
SSGIVVEFEFNLAKEKKLLPPSFNSDDVMVSYELKADVFNLQLNGKKASL
YTRLPIVVHDNGKIPKSISQFSKKSYSVSVTLDKPAFKHKDNVDLTIHVE
NKTKKQLTVRILLVQQTENSKTGKILRYIEVSTPILLLVLPKSKIVSNEV
IPLKDDIFHFQPTLSNCQMISVGYSLIIEVMSEKQELLNKHVNPIHIKRK
YGFSSTELSCEGYPLLPLTLEYFSKDGDHSVPEFLQTYSDASMVKLISSG
SCFEKWKGWKIK Run BLAST on NCBI transcript from alignment at scaffold_48:63149..66673 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068180 ID=TCONS_00068180|Name=TCONS_00068180|organism=Clytia hemisphaerica|type=transcript|length=3525bp|location=Sequence derived from alignment at scaffold_48:63149..66673 (Clytia hemisphaerica)
ctatcacgagatataggtctttttttaatttgaagacccccccaaaaaaa
aaatcatgatatttcaagccttgcaattttgcctggaaacgcaaaaaatc
gcaaattacgcaaaaactgctGGTTTTCacgcttggtaacattcaaattc
ggattcagcaccctcaaattgaccaaaatcaatTGCCAAAGCTTGGTcaa
agacattttgaatttgttctttttttttgaacatttttaatcatccactg
gccacggcctataaggaactcgataaggaactttgaaattgaaactctct
ggcaaaataaggaactccaggcttggagccaagttaaggttccttattaa
AAATAAACGTGCATGAGAAATATTCCCCtcctattttaatttttttataa
ctaTCACACCTTCAAAATAAGAGGCTGCTTCAAGTTGCACCTGGTTGCAC
CATTAtttccatcatcatcattaaaattttgaccTCTTAGAGTCACCATT
TTCAACTTGTTACCCCCTGTTGCCTTGTGTTATCCCCTGTTACCTCATTT
TACCCCCTCTCACCCTTTTTAGCAATAACGCAAGCTGTGACAAATTTTCT
CTTGTTTTCTATCTAGATGGAAAAGTTTGACAGTTGAAtgaatacaaaga
aaatttgttAAAGAAATAAAAGATATGATACAAATATGTCGCAGAAGACT
GTTTGGCCAGTCAGTAATACAAAAGCTGAACATGCCATGTTTACAATCTC
TATAGACGAAGATCGCCAACTGTTTAGAGCTGGAGAAAGCATCAAAGGAT
TTGTGTACATTAATTTCAATGACACTGGTGAAGAATTAAATTTAGACTCT
TTAAAAATATCACTTCGACAAAGTATCAGTCAACCTCATCTGATCACTCC
AAGTAAAAAGAATGTTGTTACAAATCTCATTACCGAACAAGTTCTTATTC
TTAAAGATGATTCTgagaatttttcaacttttcatcaTCAGTTAAATCAG
TCTTTGCCATTGAAAGTACCTTTTATGATAGAATTACCACCTCCTTTGGC
TTCTTCCTACAATTCTAATGATGTCACAATTTGTTATGAGGTAAAAGCTG
AGTTGGTTCAACTGAATCTTTGTGGTGAACTTTGTGATCTGAACGTCAAT
CTACCTGTTGAAGTTATTGAGGAGCCAAATGTTATCAAAGAACCAGCAGC
ACAACTTCAAGAAGCTATCAATAATAATTTAATGACATTTTATGCAAGTC
TGAAAAAGACTGTTTTCAGCACTGGGGAAAGTGTGGCTATTGAATTTTAT
CTCGATCTGAATAGTTCTTCAACAGTTTTGATGAACTTTCAGATTCAGCA
AGTCTTGTGTTTTGCTGATAAGCGAACTGAAACTGTAATTGTCAAAGAAT
TCATCGGAGAGTTTGTGTCTGACCCCGTAACTGGCATTCTTCTTTCCAAA
TATTCATTTCTTTTGGACGATACAATATTTACTTCTCAGCCTTCAATACA
TAATAGCAATCACATAAAAGTCAAATACCTTGTTAGTGTTTTGGCTCAGT
TTAAAGGTCAATCTTATGAACTTTTCATACCCATAATCATTGAAAGAAAT
GATGATGGATTGTTTAAACGATACCTCAGAGTCTACTCAGATCAAGGTTT
ACCATTATTGCCGCTCACTGTGACTGTGAAAGAATTGAAAGCTGATGGGC
TGCAATCATACATTCCAATGAAACAATGTTATGAGAACAAACGGTTGACT
GTTAAAAAAGGTCAAGTAGGTGGAATGAAGGCTATTCTAACCATCATCTC
AGAATCCTTTAAAGCTTACACCAGCACTGATATAATCAAAGGTTTTGTAT
ATTTATCCTTCCCTGATATCAGTGACAAAGTTGTTTTCGATAAACTCTTG
ATCGTACTTGTTGGTGCGTGCCAGTATAAAAATACAGGTACTATTCATAG
AAATGGGgagatgtttttattcaaaagtcagATTCTACACGGGAACAATG
ACAAGAAATCTTCTCCAGTCATTTTGAAAGGTCCCTCATCTGGTATCGTT
GTGGAATTTGAATTCAATTTGGCAAAAGAAAAGAAGTTATTACCTCCCTC
ATTTAATTCTGATGATGTCATGGTATCCTATGAATTGAAAGCTGACGTTT
TTAATTTacaattgaatggaaaaaaagcTTCCTTGTATACCAGGCTACCA
ATTGTTGTACACGATAATGGGAAAATACCGAAATCAATCagtcaattttc
caagaaatctTATTCTGTATCAGTGACCCTTGATAAACCAGCTTTCAAAC
ACAAAGACAATGTAGATCTAACTATTCATGTTGAAAATAAGACCAAGAAG
CAATTGACTGTCCGAATATTGCTTGTACAACAaacagaaaattcaaaaac
tggAAAGATTTTAAGATATATTGAAGTCAGTACACCAATTTTGTTGTTAG
TTCTTCCCAAAAGTAAGATTGTGTCAAACGAAGTTATACCGCTCAAAGAt
gacatttttcattttcaacccACATTGTCAAATTGTCAAATGATTTCTGT
TGGGTATTCCTTAATCATTGAAGTGATGAGCGAGAAACAAGAATTACTGA
ACAAGCATGTCAACCCTATCCATATTAAACGGAAATATGGGTTCAGCAGT
ACTGAGTTGTCGTGTGAAGGTTATCCTCTGTTACCTTTAAcgttggaata
tttttcaaaagatggTGACCATTCTGTACCCGAATTTCTTCAAACTTATT
CTGACGCATCCATGGTAAAATTGATATCAAGTGGTTCGtgttttgaaaaa
tggaaaggatggaaaatcaaatgaaatctttttatttgtttttgatcaGT
TAGCAAatgaatttttgcatttttacaTTTATACATAAGAGGGTCTCTTG
CTAGTTTCAACCTCCATTACTCGAACCTTTGTATAATTTAACTAATTCTC
ACTGCTTATCAGGgaattattattaaactttttaaaagctCAAACTCTCT
GCAATTCGAACTAAGTTGCAGCAAATTAGTTTCACTTCCTATCTTGCATC
AGTGCAATAACGTCACTatattgaaatgaaatataCTTTGATTCAGTTTC
CAAAATGCACTAGAGAATAAGCTGTACAATTTGAAGCTCCATTTCTAATA
GAAATTAGTAAGCGCTTTAAGGGGAACATTGACCAAGTTtggcttttttt
ttcaatttaaaaatgaatgaatattATCATAGAATCagtatataaaatga
aattttgggaTAATTattatttagatatttttatagaACGTTTAGGTGTT
GTGATGCATAATTTAGTAGGGTAAATTTTCTGTATTGATTTGTAAATaat
tattctattttatttgttttcgttttgttaCCAGTTACAACTTTTAGAGA
ATCAATGACTTTTATTAAGACGTTTTCATCTTTTTCCTGTTGGCTTATTA
TCTATAATTAATTCGTCATCATCGTGGTTGGACTGCAGTCGAGACGAGAC
TGAGAATGAATGAGAGAAGTGCTAA Coding sequence (CDS) from alignment at scaffold_48:63149..66673 >TCONS_00068180 ID=TCONS_00068180|Name=TCONS_00068180|organism=Clytia hemisphaerica|type=CDS|length=2139bp|location=Sequence derived from alignment at scaffold_48:63149..66673 (Clytia hemisphaerica)
ATGTCGCAGAAGACTGTTTGGCCAGTCAGTAATACAAAAGCTGAACATGC
CATGTTTACAATCTCTATAGACGAAGATCGCCAACTGTTTAGAGCTGGAG
AAAGCATCAAAGGATTTGTGTACATTAATTTCAATGACACTGGTGAAGAA
TTAAATTTAGACTCTTTAAAAATATCACTTCGACAAAGTATCAGTCAACC
TCATCTGATCACTCCAAGTAAAAAGAATGTTGTTACAAATCTCATTACCG
AACAAGTTCTTATTCTTAAAGATGATTCTgagaatttttcaacttttcat
caTCAGTTAAATCAGTCTTTGCCATTGAAAGTACCTTTTATGATAGAATT
ACCACCTCCTTTGGCTTCTTCCTACAATTCTAATGATGTCACAATTTGTT
ATGAGGTAAAAGCTGAGTTGGTTCAACTGAATCTTTGTGGTGAACTTTGT
GATCTGAACGTCAATCTACCTGTTGAAGTTATTGAGGAGCCAAATGTTAT
CAAAGAACCAGCAGCACAACTTCAAGAAGCTATCAATAATAATTTAATGA
CATTTTATGCAAGTCTGAAAAAGACTGTTTTCAGCACTGGGGAAAGTGTG
GCTATTGAATTTTATCTCGATCTGAATAGTTCTTCAACAGTTTTGATGAA
CTTTCAGATTCAGCAAGTCTTGTGTTTTGCTGATAAGCGAACTGAAACTG
TAATTGTCAAAGAATTCATCGGAGAGTTTGTGTCTGACCCCGTAACTGGC
ATTCTTCTTTCCAAATATTCATTTCTTTTGGACGATACAATATTTACTTC
TCAGCCTTCAATACATAATAGCAATCACATAAAAGTCAAATACCTTGTTA
GTGTTTTGGCTCAGTTTAAAGGTCAATCTTATGAACTTTTCATACCCATA
ATCATTGAAAGAAATGATGATGGATTGTTTAAACGATACCTCAGAGTCTA
CTCAGATCAAGGTTTACCATTATTGCCGCTCACTGTGACTGTGAAAGAAT
TGAAAGCTGATGGGCTGCAATCATACATTCCAATGAAACAATGTTATGAG
AACAAACGGTTGACTGTTAAAAAAGGTCAAGTAGGTGGAATGAAGGCTAT
TCTAACCATCATCTCAGAATCCTTTAAAGCTTACACCAGCACTGATATAA
TCAAAGGTTTTGTATATTTATCCTTCCCTGATATCAGTGACAAAGTTGTT
TTCGATAAACTCTTGATCGTACTTGTTGGTGCGTGCCAGTATAAAAATAC
AGGTACTATTCATAGAAATGGGgagatgtttttattcaaaagtcagATTC
TACACGGGAACAATGACAAGAAATCTTCTCCAGTCATTTTGAAAGGTCCC
TCATCTGGTATCGTTGTGGAATTTGAATTCAATTTGGCAAAAGAAAAGAA
GTTATTACCTCCCTCATTTAATTCTGATGATGTCATGGTATCCTATGAAT
TGAAAGCTGACGTTTTTAATTTacaattgaatggaaaaaaagcTTCCTTG
TATACCAGGCTACCAATTGTTGTACACGATAATGGGAAAATACCGAAATC
AATCagtcaattttccaagaaatctTATTCTGTATCAGTGACCCTTGATA
AACCAGCTTTCAAACACAAAGACAATGTAGATCTAACTATTCATGTTGAA
AATAAGACCAAGAAGCAATTGACTGTCCGAATATTGCTTGTACAACAaac
agaaaattcaaaaactggAAAGATTTTAAGATATATTGAAGTCAGTACAC
CAATTTTGTTGTTAGTTCTTCCCAAAAGTAAGATTGTGTCAAACGAAGTT
ATACCGCTCAAAGAtgacatttttcattttcaacccACATTGTCAAATTG
TCAAATGATTTCTGTTGGGTATTCCTTAATCATTGAAGTGATGAGCGAGA
AACAAGAATTACTGAACAAGCATGTCAACCCTATCCATATTAAACGGAAA
TATGGGTTCAGCAGTACTGAGTTGTCGTGTGAAGGTTATCCTCTGTTACC
TTTAAcgttggaatatttttcaaaagatggTGACCATTCTGTACCCGAAT
TTCTTCAAACTTATTCTGACGCATCCATGGTAAAATTGATATCAAGTGGT
TCGtgttttgaaaaatggaaaggatggaaaatcaaatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068180-exon-scaffold_48-1491911889:63149..66673 | TCONS_00068180-exon-scaffold_48-1491911889:63149..66673 | Clytia hemisphaerica | exon |
| TCONS_00068180-exon-scaffold_48-1510915933:63149..66673 | TCONS_00068180-exon-scaffold_48-1510915933:63149..66673 | Clytia hemisphaerica | exon |
| TCONS_00068180-exon-scaffold_48-1575043694:63149..66673 | TCONS_00068180-exon-scaffold_48-1575043694:63149..66673 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_48 | supercontig | scaffold_48:63149..66673 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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