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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068176 ID=TCONS_00068176|Name=TCONS_00068176|organism=Clytia hemisphaerica|type=transcript|length=3175bp
aacagacctcactaactgtttctggctgaaaaacgcTGGCTGGCTGGAAG
AAAGGAGAGTGTTTTAAAGCGTTCATTTTTTCACATTAGCATATCAATCT
GCTTATCTCAATAGAATATCAGTCATGGAtgtcataaaaaagttaaatat
tttgaaGACAGATTTCAATAATGATGAGGTTGTAACCCAATGCAAAATGG
TTGCTCGAGAGTTTTACCAACAAAATCAACAGTTGTTTGAATTCAGCTCA
ATATTAAACATTGATGATCACGCTGAATTACTCTGTCTTATATTTGATTT
ATTTGAAAAGAATGGCTTTAATGAAGAACtgaaattgaatttgttgtCCG
TCTTACGCTTATTGAGTAGAGATCGtaaacttgttcttagtatAAAAGAT
ATTGGAAAGTGTATTCAAAGCTTTGTCAAATATTTCCAAGGACAAGATAC
GCATGGTAATAATGTCGAAAATGACTGTGTCATCGAAGTGCTTAGATGTA
TATGCAATTGGGTATACCACAGTAAACCTGTAAGAGATTTTCTTCTGAAG
ATCAAATTGGCTGAGAATCTTATCAAGAACATGAAGACTTTCATATTAAA
TgatcatttatatttcaaattacgCTTGATATTTTTGATGTCAGCACACG
AGAATGAATTTCGTTTAGCTATGGTTGAATGCAGTGCAATGAGTTTGATG
CTACAAATTATTCAAAAGATTATCTCCCAAGctaaaaaTTCTAACCATGT
GATGGATGCACAAGGCTGTAAGATATTTTGTGAAGTGTTTAGAGCCTCAT
TCAATATAACACTTGCATTACAAGAATGTTCTTCAGATGGTACAATTGAA
AGTTGTTCTTCACTTGTTCTATGTTGTACTGAAGTTCTGCATCTAGACCT
TCACAAGAATGCACCAGAAGACATTGTGACACCAATAGTCCATCTAATGG
TCAATCTACCAAAAGCATGTCTGGAGAAGCTTTGTCCTCCTGTTTCAACA
GAAAATAATGAATCACTAGTCAATGATCAAAAGGTTTTTAAGGAACATGA
CATGACAAGCGTCATTATACTTTTGAAAGAACTGAGAGAGAGAATCAAGA
TTCAAGATTAcagtaaaatgaaagaaaagacGATGGCCATTTTGACAGCA
TTTAGCTACATTTGTCGAGATGTACCTCTTATGAGAAAGTATTTGCGTGG
TGAAGTGTTACCTCCATTGAGCATCACAAAGGAGCGACCGGAAGAACGAC
AAGATGCTTGCGGTGATATTGTCCGCTTGATGACCACTGTTGATGTCATG
CTAAAAAATATGGCAGCAGACTTTCTGTTTGTATTATGTAAAGAGAACAC
AGAGCGATTGATCCGATACACTGGATATGGTAATTCTGCGGGTTTCCTTG
CAACAAGAGGGTTGATGGTACCTGGTCGACATGTTGATGGTGATTATTCT
GAAGATGAGTTGACTGATGTGGATGATGAGCAAGTGGACGTCACTACTGG
TGCAATGAAAGAGGAGAAGCCTTCACCTTTGGATAGCATGACTGAAGAAG
AGAAGGAGATCGAAGCAGAGAAGTTGATGCACATGTTTGAAAGGTTGAAG
GAGTTGAACGCAATCAAACCTATGACTGTCACCAAAGATGGAAAATTAGT
GGAATTCACCGGTCCAAAGGATGATGAGTGATGGGGTGAAGAGAGCGTGA
GAGAGTGAGTGTGATTATCGGACCTTTTTGAAGATATTGATATCAGTGCT
TCTTATTTTATTCTAAGAATACAGGACCTGTCGAGTAGTTGggtgagacc
aatttgattagttgttttacagGCCCAACCGACCCTGTTATTcccaaaat
cgaaataaaattaaatttattttggcagtacatttttattttcatttctt
ttatagactacaaaattttcaaaattttgcttctttttccaaggttttga
gaattttatgttcaatttttcattttatccatgcaTTCGACCTTTTTGCg
tctttttgttttctatttcgcatttttgtcaagatgtaatTATTGTTGCC
CTTTCAGGAGTGTAGATGAAATTCTACtttcagttttattttttcCCCGA
CCGAcagaccctcttttttgggtagcctGGTCcgtaaaaaacaacaaatt
agatTGGCTTCGCCTTTTGTATCTGGATCTGGTCTTGTGTGTATTTTTTA
GTGTGACTAGAACcacttgataatttttttagaaagtGAAGATTCATTTT
CCTTTCTTACTCAAATCAAATGCACCATAGATGGTACaatgatacaattt
taaatcGACGCACTTGTATACTGTatctgttttcaatttttaaattcaat
taaTTATTCTAAGTGTTATGTCCTCGTTCTTTGACGGAGTACTATCTGCT
TTACTTTTTGTTGTCAtgcatttttacaatttttgcagTAAATCCTCTGC
CAGTGAATTTCATAAGCAAtcatagattttttttattttttagatttttg
taatttattttaGTTTAGTATTGTATCATATTTATAATTGTATTAGTTGT
TGCTGTCATTTTTGTTCTACATCATGGAATAAAGGGATAATTAATTTGGT
ctcttgaaattgaaataagaaaaaaatagtaatttaaaaagtttaaccTT
CTCTAGTGGAGTTTTAATACAATAANAGAAAGATGAACCGGTGGCCAAGA
AGAGTAGAAAAGAAGAAAGTCCCAAGAAGAAGAAGCAGGAAAGTAGCAGC
AGTGGTAGTGGTAGTAAAATGGTCACAACCAAAGATGGTGAAGTCTACTG
GGAGCTTACACACAATCGACGCGTTGGTTTATCAGAGTTCAGAGGGAAGA
TGTTCGTCAACATCAGGGAGTATTATGAGAAAAATGGAGAACTTCTGCCT
GGGAGGAAAGGCATCAGTCTACCTATGGAACAATGGAAAAAGTTGAGCAA
ACTTTCCAAAGAAATCAATCATCATATAGAAGAAGAGGGGTATTAAAGGA
AAACACCAAACAGTGGTTGGTGTTGCTGGTGCTTTTTACTGAGTAGGGAT
GAGTGACTACTCATGTTGGTTACTGCTGCAGTTTCCCATTACCTTGTAAA
GTGTGTTTTTAATACTGTAAATATTATTAGGTTTAAACAAGTGATTGTTC
TTAATTATGTCATCAGAGCAATTTT Run BLAST on NCBI protein sequence of TCONS_00068176-protein >TCONS_00068176-protein ID=TCONS_00068176-protein|Name=TCONS_00068176-protein|organism=Clytia hemisphaerica|type=polypeptide|length=518bp
MDVIKKLNILKTDFNNDEVVTQCKMVAREFYQQNQQLFEFSSILNIDDHA
ELLCLIFDLFEKNGFNEELKLNLLSVLRLLSRDRKLVLSIKDIGKCIQSF
VKYFQGQDTHGNNVENDCVIEVLRCICNWVYHSKPVRDFLLKIKLAENLI
KNMKTFILNDHLYFKLRLIFLMSAHENEFRLAMVECSAMSLMLQIIQKII
SQAKNSNHVMDAQGCKIFCEVFRASFNITLALQECSSDGTIESCSSLVLC
CTEVLHLDLHKNAPEDIVTPIVHLMVNLPKACLEKLCPPVSTENNESLVN
DQKVFKEHDMTSVIILLKELRERIKIQDYSKMKEKTMAILTAFSYICRDV
PLMRKYLRGEVLPPLSITKERPEERQDACGDIVRLMTTVDVMLKNMAADF
LFVLCKENTERLIRYTGYGNSAGFLATRGLMVPGRHVDGDYSEDELTDVD
DEQVDVTTGAMKEEKPSPLDSMTEEEKEIEAEKLMHMFERLKELNAIKPM
TVTKDGKLVEFTGPKDDE Run BLAST on NCBI transcript from alignment at scaffold_48:396845..402500- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068176 ID=TCONS_00068176|Name=TCONS_00068176|organism=Clytia hemisphaerica|type=transcript|length=5656bp|location=Sequence derived from alignment at scaffold_48:396845..402500- (Clytia hemisphaerica)
AACAGACCTCACTAACTGTTTCTGGCTGAAAAACGCTGGCTGGCTGGAAG
AAAGGAGAGTGTTTTAAAGCGTTCATTTTTTCACATTAGCATATCAATCT
GCTTATCTCAATAGAATATCAGTCATGGATGTCATAAAAAAGTTAAATAT
TTTGAAGACAGATTTCAATAATGATGAGGTTGTAACCCAATGCAAAATGG
TTGCTCGAGAGTTTTACCAACAAAATCAACAGTTGTTTGAATTCAGCTCA
ATATTAAACATTGATGATCACGCTGAATTACTCTGTCTTATATTTGATTT
ATTTGAAAAGAATGGCTTTAATGAAGAACTGAAATTGAATTTGTTGTCCG
TCTTACGCTTATTGAGTAGAGATCGTAAACTTGTTCTTAGTATAAAAGAT
ATTGGAAAGTGTATTCAAAGCTTTGTCAAATATTTCCAAGGACAAGATAC
GCATGGTAATAATGTCGAAAATGACTGTGTCATCGAAGTGCTTAGATGTA
TATGCAATTGGGTATACCACAGTAAACCTGTAAGAGATTTTCTTCTGAAG
ATCAAATTGGCTGAGAATCTTATCAAGAACATGAAGACTTTCATATTAAA
TGATCATTTATATTTCAAATTACGCTTGATATTTTTGATGTCAGCACACG
AGAATGAATTTCGTTTAGCTATGGTTGAATGCAGTGCAATGAGTTTGATG
CTACAAATTATTCAAAAGATTATCTCCCAAGCTAAAAAGTAAGAATAATA
ACTATTTTTGAATGTTTTTACTGGAAAGAAGCAAACAAATTGTTGGTAAA
TGAAATAAAGTTTCCACGGTTGAAATAGTCATCACAAAAGTTTCTTCTAT
TACCTTCTTTTTCACTTTTTGCAAACTGACCATCTTTCACCGCATATACT
GTAAAATTATTTAAAATATGTTGCTTGTTTGTTTTAGTTCTAACCATGTG
ATGGATGCACAAGGCTGTAAGATATTTTGTGAAGTGTTTAGAGCCTCATT
CAATATAACACTTGCATTACAAGAATGTTCTTCAGATGGTACAATTGAAA
GTTGTTCTTCACTTGTTCTATGTTGTACTGAAGTTCTGCATCTAGACCTT
CACAAGAATGCACCAGAAGACATTGTGACACCAATAGTCCATCTAATGGT
CAATCTACCAAAAGCATGTCTGGAGAAGCTTTGTCCTCCTGTTTCAACAG
AAAATAATGAATCACTAGTCAATGATCAAAAGGTTTTTAAGGTGAAGCAT
TGTTCATAATTTTTCTAAGTGATTTATGGAGAAGAAAACAAATCCAAAAT
AAAAAATTTGAAAAATGTTTTCAGTTTGATTTGGTGAATTCTGATCTTTA
AATCTTTTAGGAACATGACATGACAAGCGTCATTATACTTTTGAAAGAAC
TGAGAGAGAGAATCAAGATTCAAGATTACAGTAAAATGAAAGAAAAGACG
ATGGCCATTTTGACAGCATTTAGCTACATTTGTCGAGATGTACCTCTTAT
GAGAAAGTATTTGCGTGGTGAAGTGTTACCTCCATTGAGCATCACAAAGG
AGCGACCGGAAGAACGACAAGATGCTTGCGGTGATATTGTCCGCTTGATG
ACCACTGTTGATGTCATGCTAAAAGTAATCTTTGACCTTTTTTTAGCAAT
TTTTGATTATTTCTTGACCACTTCAGAAACTTATAGCAAAGATTTTGGCT
AATCATTTTGAATTTTGTACAATCATCGTATAGAAAAGCTCACCGTCATA
ATCCTTTTTTTCAGAATATGGCAGCAGACTTTCTGTTTGTATTATGTAAA
GAGAACACAGAGCGATTGATCCGATACACTGGATATGGTAATTCTGCGGG
TTTCCTTGCAACAAGAGGGTTGATGGTACCTGGTCGACATGTTGATGGTG
ATTATTCTGAAGATGAGTTGACTGATGTGGATGATGAGCAAGTGGACGTC
ACTACTGGTACGTTTGAACAGAATCTTTTTTCTGGATTCTTGTTTTTCTT
AGTTGCTTTGAATGAAATCATCAAATTAAAACCTCGTCAATGCATTGATG
CGATCATAACTTTTGAGAATATATTTAATTGATCTATTAATTCCTCAAAA
GTTGACATTTCGGTCTGTATATAAATCCAGCTTAACTCCACTCTTCTTTG
GATCAACAGGTGCAATGAAAGAGGAGAAGCCTTCACCTTTGGATAGCATG
ACTGAAGAAGAGAAGGAGATCGAAGCAGAGAAGTTGATGCACATGTTTGA
AAGGTTGAAGGAGTTGAACGCAATCAAACCTATGACTGTCACCAAAGATG
GAAAATTAGTGGAATTCACCGGTCCAAAGGATGATGAGTGATGGGGTGAA
GAGAGCGTGAGAGAGTGAGTGTGATTATCGGACCTTTTTGAAGATATTGA
TATCAGTGCTTCTTATTTTATTCTAAGAATACAGGACCTGTCGAGTAGTT
GGGTGAGACCAATTTGATTAGTTGTTTTACAGGCCCAACCGACCCTGTTA
TTCCCAAAATCGAAATAAAATTAAATTTATTTTGGCAGTACATTTTTATT
TTCATTTCTTTTATAGACTACAAAATTTTCAAAATTTTGCTTCTTTTTCC
AAGGTTTTGAGAATTTTATGTTCAATTTTTCATTTTATCCATGCATTCGA
CCTTTTTGCGTCTTTTTGTTTTCTATTTCGCATTTTTGTCAAGATGTAAT
TATTGTTGCCCTTTCAGGAGTGTAGATGAAATTCTACTTTCAGTTTTATT
TTTTCCCCGACCGACAGACCCTCTTTTTTGGGTAGCCTGGTCCGTAAAAA
ACAACAAATTAGATTGGCTTCGCCTTTTGTATCTGGATCTGGTCTTGTGT
GTATTTTTTAGTGTGACTAGAACCACTTGATAATTTTTTTAGAAAGTGAA
GATTCATTTTCCTTTCTTACTCAAATCAAATGCACCATAGATGGTACAAT
GATACAATTTTAAATCGACGCACTTGTATACTGTATCTGTTTTCAATTTT
TAAATTCAATTAATTATTCTAAGTGTTATGTCCTCGTTCTTTGACGGAGT
ACTATCTGCTTTACTTTTTGTTGTCATGCATTTTTACAATTTTTGCAGTA
AATCCTCTGCCAGTGAATTTCATAAGCAATCATAGATTTTTTTTATTTTT
TAGATTTTTGTAATTTATTTTAGTTTAGTATTGTATCATATTTATAATTG
TATTAGTTGTTGCTGTCATTTTTGTTCTACATCATGGAATAAAGGGATAA
TTAATTTGGTCTCTTGAAATTGAAATAAGAAAAAAATAGTAATTTAAAAA
GTTTAACCTTCTCTAGTGGAGTTTTAATACAATAANAGAAAGATGAACCG
GTGGCCAAGAAGAGTAGAAAAGAAGAAAGTCCCAAGAAGAAGAAGCAGGA
AAGTAGCAGCAGTGGTAGTGGTAGTAAAATGGTCACAACCAAAGATGGTG
AAGTCTACTGGGAGGTTATTCTCATTATTTTCTTTCTCTTACATTTTCAA
GATCAATGTGTCGAAACTTATTTTAAAAGGTTTTCTACGGGAATATAAAA
AGCTTATTTTAGGCAGTGTCTTCATACTGAGTCAGATAAATTAAAGCTAC
TTTTTACGCAACGATATCCTGCAAACAAGTGAAAGATTTAAAGTTGTTTC
GAGATGTGACCTCACATTCTATTGCTTTTGTAAACAAATGAAAATAGCGA
AGTTGATTGCGAGCAAATTTGCAATCGAATGTTTTGATTATAAGATAGAA
AACTTTCTATTTATTATAAACATAAAAATATTCGAAAGAGTATCAGTAAA
AGGCCCTTTGTTTGAGGAATGTTTTTTTTATTCAATGTATTTTCATTTTT
TCAAAACCTCAGTGCTTTGTTCAACACTTTACAAACTCGTTGATATGTTT
CTAATTTTTTAGGCTTTCATCTAATGGACTCTAAATCANCCACTGAAGAA
GAGTCTGATGAACCAAAGAAGAAAGAAACCACCAAAAAGAAACCTCAAAA
ACCAGCTCCTGAAAAACGAGAACGAGTAAGTGCCAACAACTACCATACTC
GACATTGGTATCAAAATTCAATCAATAGATGGATTTTCTCATAGCGAGAT
GGGATGAATTTTCCGTTGTCACGTGATCTATTTTTAGTATAATTTAATTC
GTCTAACAGAACGTCTGGTGAATTTATCCAATACAATAAGCTGAGCCAGC
CTTGGCCAGGTTTGATTCGTATGAACATCTCATTAGTCTCTAGAATGTTA
TAGTTACAAAGTATGCCATAACCGTATTTGGCATTAAAAATATTTTTTTG
TACTTTTTTACAAAAATCATACAATGGGATTTGACATCTCTTTCTTCAAT
CATGCTTTGAAAGCGTTTATAGAAAACAAAACAGGTTTGGAAGAAGGAAT
AATGACTTTAGACTCTCTTTTTTAGAAGAAACCGATGGAAAGGAGGCCAT
TGAGTGAATCTGAAGAAGAAGATGAGAAAGATGAACCAGTAGCCAAGAAG
AGTAGAAAAGAAGAAAGTCCCAAGAAGAAGAAGCAGGAAAGTAGCAGCAG
TGGTAGTGGTAGTAAAATGGTCACAACCAAAGATGGTGAAGTCTACTGGG
AGGTTATTCTCATTATTTTCTTTCTCTTACATTTTCAAGATCAATGTGTC
GAAACTTATTTTAAAAGGTTTTCTACGGGAATATAAAAAGCTTATTTTAG
GCAGTGTCTTCATACTGAGTCAGATAAATTAAAGCTACTTTTTACGCAAC
GATATCCTGCAAACAAGTGAAAGATTTAAAGTTGTTTCGAGATGTGACCT
CACATTCTATTGCTTTTGTAAACAAATGAAAATAGCGAAGTTGATTGCGA
GCAAATTTGCAATCGAATGTTTTGATTATAAGATAGAAAACTTTCTATTT
ATTATAAACATAAAAATATTCGAAAGAGTATCAGTAAAAGGCCCTTTGTT
TGAGGAATGTTTTTTTTATTCAATGTATTTTCATTTTTTCAAAACCTCAG
TGCTTTGTTCAACACTTTACAAACTCGTTGATATGTTTCTAATTTTTTAG
GCTTTCATCTAATGGACTCTAAATCATTTTTTTTTACTGTAGCTTACACA
CAATCGACGCGTTGGTTTATCAGAGTTCAGAGGGAAGATGTTCGTCAACA
TCAGGGAGTATTATGAGAAAAATGGAGAACTTCTGCCTGGGAGGAAAGGT
ATTGATCCGTTGCCGTTTTAAATTTGATTTCTCACAAAAATATAATTTTT
CGTCTTTTAAAAACACATGTCAAAGGCTATAGAACCCATTCTGAATAGAC
TTTATTTCACTTGATCCGATCATTGGACTTAGAAATAACACTTCTCCGCC
GTCATAAGTTTTTAACTTCTTTTTTATCTCCATATTTTTAGGCATCAGTC
TACCTATGGAACAATGGAAAAAGTTGAGCAAACTTTCCAAAGAAATCAAT
CATCATATAGAAGAAGAGGGGTATTAAAGGAAAACACCAAACAGTGGTTG
GTGTTGCTGGTGCTTTTTACTGAGTAGGGATGAGTGACTACTCATGTTGG
TTACTGCTGCAGTTTCCCATTACCTTGTAAAGTGTGTTTTTAATACTGTA
AATATTATTAGGTTTAAACAAGTGATTGTTCTTAATTATGTCATCAGAGC
AATTTT Coding sequence (CDS) from alignment at scaffold_48:396845..402500- >TCONS_00068176 ID=TCONS_00068176|Name=TCONS_00068176|organism=Clytia hemisphaerica|type=CDS|length=7785bp|location=Sequence derived from alignment at scaffold_48:396845..402500- (Clytia hemisphaerica)
GTGCAATGAAAGAGGAGAAGCCTTCACCTTTGGATAGCATGACTGAAGAA
GAGAAGGAGATCGAAGCAGAGAAGTTGATGCACATGTTTGAAAGGTTGAA
GGAGTTGAACGCAATCAAACCTATGACTGTCACCAAAGATGGAAAATTAG
TGGAATTCACCGGTCCAAAGGATGATGAGTGAAATATGGCAGCAGACTTT
CTGTTTGTATTATGTAAAGAGAACACAGAGCGATTGATCCGATACACTGG
ATATGGTAATTCTGCGGGTTTCCTTGCAACAAGAGGGTTGATGGTACCTG
GTCGACATGTTGATGGTGATTATTCTGAAGATGAGTTGACTGATGTGGAT
GATGAGCAAGTGGACGTCACTACTGGAACATGACATGACAAGCGTCATTA
TACTTTTGAAAGAACTGAGAGAGAGAATCAAGATTCAAGATTACAGTAAA
ATGAAAGAAAAGACGATGGCCATTTTGACAGCATTTAGCTACATTTGTCG
AGATGTACCTCTTATGAGAAAGTATTTGCGTGGTGAAGTGTTACCTCCAT
TGAGCATCACAAAGGAGCGACCGGAAGAACGACAAGATGCTTGCGGTGAT
ATTGTCCGCTTGATGACCACTGTTGATGTCATGCTAAAATTCTAACCATG
TGATGGATGCACAAGGCTGTAAGATATTTTGTGAAGTGTTTAGAGCCTCA
TTCAATATAACACTTGCATTACAAGAATGTTCTTCAGATGGTACAATTGA
AAGTTGTTCTTCACTTGTTCTATGTTGTACTGAAGTTCTGCATCTAGACC
TTCACAAGAATGCACCAGAAGACATTGTGACACCAATAGTCCATCTAATG
GTCAATCTACCAAAAGCATGTCTGGAGAAGCTTTGTCCTCCTGTTTCAAC
AGAAAATAATGAATCACTAGTCAATGATCAAAAGGTTTTTAAGATGGATG
TCATAAAAAAGTTAAATATTTTGAAGACAGATTTCAATAATGATGAGGTT
GTAACCCAATGCAAAATGGTTGCTCGAGAGTTTTACCAACAAAATCAACA
GTTGTTTGAATTCAGCTCAATATTAAACATTGATGATCACGCTGAATTAC
TCTGTCTTATATTTGATTTATTTGAAAAGAATGGCTTTAATGAAGAACTG
AAATTGAATTTGTTGTCCGTCTTACGCTTATTGAGTAGAGATCGTAAACT
TGTTCTTAGTATAAAAGATATTGGAAAGTGTATTCAAAGCTTTGTCAAAT
ATTTCCAAGGACAAGATACGCATGGTAATAATGTCGAAAATGACTGTGTC
ATCGAAGTGCTTAGATGTATATGCAATTGGGTATACCACAGTAAACCTGT
AAGAGATTTTCTTCTGAAGATCAAATTGGCTGAGAATCTTATCAAGAACA
TGAAGACTTTCATATTAAATGATCATTTATATTTCAAATTACGCTTGATA
TTTTTGATGTCAGCACACGAGAATGAATTTCGTTTAGCTATGGTTGAATG
CAGTGCAATGAGTTTGATGCTACAAATTATTCAAAAGATTATCTCCCAAG
CTAAAAAGTGCAATGAAAGAGGAGAAGCCTTCACCTTTGGATAGCATGAC
TGAAGAAGAGAAGGAGATCGAAGCAGAGAAGTTGATGCACATGTTTGAAA
GGTTGAAGGAGTTGAACGCAATCAAACCTATGACTGTCACCAAAGATGGA
AAATTAGTGGAATTCACCGGTCCAAAGGATGATGAGTGAAATATGGCAGC
AGACTTTCTGTTTGTATTATGTAAAGAGAACACAGAGCGATTGATCCGAT
ACACTGGATATGGTAATTCTGCGGGTTTCCTTGCAACAAGAGGGTTGATG
GTACCTGGTCGACATGTTGATGGTGATTATTCTGAAGATGAGTTGACTGA
TGTGGATGATGAGCAAGTGGACGTCACTACTGGAACATGACATGACAAGC
GTCATTATACTTTTGAAAGAACTGAGAGAGAGAATCAAGATTCAAGATTA
CAGTAAAATGAAAGAAAAGACGATGGCCATTTTGACAGCATTTAGCTACA
TTTGTCGAGATGTACCTCTTATGAGAAAGTATTTGCGTGGTGAAGTGTTA
CCTCCATTGAGCATCACAAAGGAGCGACCGGAAGAACGACAAGATGCTTG
CGGTGATATTGTCCGCTTGATGACCACTGTTGATGTCATGCTAAAATTCT
AACCATGTGATGGATGCACAAGGCTGTAAGATATTTTGTGAAGTGTTTAG
AGCCTCATTCAATATAACACTTGCATTACAAGAATGTTCTTCAGATGGTA
CAATTGAAAGTTGTTCTTCACTTGTTCTATGTTGTACTGAAGTTCTGCAT
CTAGACCTTCACAAGAATGCACCAGAAGACATTGTGACACCAATAGTCCA
TCTAATGGTCAATCTACCAAAAGCATGTCTGGAGAAGCTTTGTCCTCCTG
TTTCAACAGAAAATAATGAATCACTAGTCAATGATCAAAAGGTTTTTAAG
ATGGATGTCATAAAAAAGTTAAATATTTTGAAGACAGATTTCAATAATGA
TGAGGTTGTAACCCAATGCAAAATGGTTGCTCGAGAGTTTTACCAACAAA
ATCAACAGTTGTTTGAATTCAGCTCAATATTAAACATTGATGATCACGCT
GAATTACTCTGTCTTATATTTGATTTATTTGAAAAGAATGGCTTTAATGA
AGAACTGAAATTGAATTTGTTGTCCGTCTTACGCTTATTGAGTAGAGATC
GTAAACTTGTTCTTAGTATAAAAGATATTGGAAAGTGTATTCAAAGCTTT
GTCAAATATTTCCAAGGACAAGATACGCATGGTAATAATGTCGAAAATGA
CTGTGTCATCGAAGTGCTTAGATGTATATGCAATTGGGTATACCACAGTA
AACCTGTAAGAGATTTTCTTCTGAAGATCAAATTGGCTGAGAATCTTATC
AAGAACATGAAGACTTTCATATTAAATGATCATTTATATTTCAAATTACG
CTTGATATTTTTGATGTCAGCACACGAGAATGAATTTCGTTTAGCTATGG
TTGAATGCAGTGCAATGAGTTTGATGCTACAAATTATTCAAAAGATTATC
TCCCAAGCTAAAAAGTGCAATGAAAGAGGAGAAGCCTTCACCTTTGGATA
GCATGACTGAAGAAGAGAAGGAGATCGAAGCAGAGAAGTTGATGCACATG
TTTGAAAGGTTGAAGGAGTTGAACGCAATCAAACCTATGACTGTCACCAA
AGATGGAAAATTAGTGGAATTCACCGGTCCAAAGGATGATGAGTGAAATA
TGGCAGCAGACTTTCTGTTTGTATTATGTAAAGAGAACACAGAGCGATTG
ATCCGATACACTGGATATGGTAATTCTGCGGGTTTCCTTGCAACAAGAGG
GTTGATGGTACCTGGTCGACATGTTGATGGTGATTATTCTGAAGATGAGT
TGACTGATGTGGATGATGAGCAAGTGGACGTCACTACTGGAACATGACAT
GACAAGCGTCATTATACTTTTGAAAGAACTGAGAGAGAGAATCAAGATTC
AAGATTACAGTAAAATGAAAGAAAAGACGATGGCCATTTTGACAGCATTT
AGCTACATTTGTCGAGATGTACCTCTTATGAGAAAGTATTTGCGTGGTGA
AGTGTTACCTCCATTGAGCATCACAAAGGAGCGACCGGAAGAACGACAAG
ATGCTTGCGGTGATATTGTCCGCTTGATGACCACTGTTGATGTCATGCTA
AAATTCTAACCATGTGATGGATGCACAAGGCTGTAAGATATTTTGTGAAG
TGTTTAGAGCCTCATTCAATATAACACTTGCATTACAAGAATGTTCTTCA
GATGGTACAATTGAAAGTTGTTCTTCACTTGTTCTATGTTGTACTGAAGT
TCTGCATCTAGACCTTCACAAGAATGCACCAGAAGACATTGTGACACCAA
TAGTCCATCTAATGGTCAATCTACCAAAAGCATGTCTGGAGAAGCTTTGT
CCTCCTGTTTCAACAGAAAATAATGAATCACTAGTCAATGATCAAAAGGT
TTTTAAGATGGATGTCATAAAAAAGTTAAATATTTTGAAGACAGATTTCA
ATAATGATGAGGTTGTAACCCAATGCAAAATGGTTGCTCGAGAGTTTTAC
CAACAAAATCAACAGTTGTTTGAATTCAGCTCAATATTAAACATTGATGA
TCACGCTGAATTACTCTGTCTTATATTTGATTTATTTGAAAAGAATGGCT
TTAATGAAGAACTGAAATTGAATTTGTTGTCCGTCTTACGCTTATTGAGT
AGAGATCGTAAACTTGTTCTTAGTATAAAAGATATTGGAAAGTGTATTCA
AAGCTTTGTCAAATATTTCCAAGGACAAGATACGCATGGTAATAATGTCG
AAAATGACTGTGTCATCGAAGTGCTTAGATGTATATGCAATTGGGTATAC
CACAGTAAACCTGTAAGAGATTTTCTTCTGAAGATCAAATTGGCTGAGAA
TCTTATCAAGAACATGAAGACTTTCATATTAAATGATCATTTATATTTCA
AATTACGCTTGATATTTTTGATGTCAGCACACGAGAATGAATTTCGTTTA
GCTATGGTTGAATGCAGTGCAATGAGTTTGATGCTACAAATTATTCAAAA
GATTATCTCCCAAGCTAAAAAGTGCAATGAAAGAGGAGAAGCCTTCACCT
TTGGATAGCATGACTGAAGAAGAGAAGGAGATCGAAGCAGAGAAGTTGAT
GCACATGTTTGAAAGGTTGAAGGAGTTGAACGCAATCAAACCTATGACTG
TCACCAAAGATGGAAAATTAGTGGAATTCACCGGTCCAAAGGATGATGAG
TGAAATATGGCAGCAGACTTTCTGTTTGTATTATGTAAAGAGAACACAGA
GCGATTGATCCGATACACTGGATATGGTAATTCTGCGGGTTTCCTTGCAA
CAAGAGGGTTGATGGTACCTGGTCGACATGTTGATGGTGATTATTCTGAA
GATGAGTTGACTGATGTGGATGATGAGCAAGTGGACGTCACTACTGGAAC
ATGACATGACAAGCGTCATTATACTTTTGAAAGAACTGAGAGAGAGAATC
AAGATTCAAGATTACAGTAAAATGAAAGAAAAGACGATGGCCATTTTGAC
AGCATTTAGCTACATTTGTCGAGATGTACCTCTTATGAGAAAGTATTTGC
GTGGTGAAGTGTTACCTCCATTGAGCATCACAAAGGAGCGACCGGAAGAA
CGACAAGATGCTTGCGGTGATATTGTCCGCTTGATGACCACTGTTGATGT
CATGCTAAAATTCTAACCATGTGATGGATGCACAAGGCTGTAAGATATTT
TGTGAAGTGTTTAGAGCCTCATTCAATATAACACTTGCATTACAAGAATG
TTCTTCAGATGGTACAATTGAAAGTTGTTCTTCACTTGTTCTATGTTGTA
CTGAAGTTCTGCATCTAGACCTTCACAAGAATGCACCAGAAGACATTGTG
ACACCAATAGTCCATCTAATGGTCAATCTACCAAAAGCATGTCTGGAGAA
GCTTTGTCCTCCTGTTTCAACAGAAAATAATGAATCACTAGTCAATGATC
AAAAGGTTTTTAAGATGGATGTCATAAAAAAGTTAAATATTTTGAAGACA
GATTTCAATAATGATGAGGTTGTAACCCAATGCAAAATGGTTGCTCGAGA
GTTTTACCAACAAAATCAACAGTTGTTTGAATTCAGCTCAATATTAAACA
TTGATGATCACGCTGAATTACTCTGTCTTATATTTGATTTATTTGAAAAG
AATGGCTTTAATGAAGAACTGAAATTGAATTTGTTGTCCGTCTTACGCTT
ATTGAGTAGAGATCGTAAACTTGTTCTTAGTATAAAAGATATTGGAAAGT
GTATTCAAAGCTTTGTCAAATATTTCCAAGGACAAGATACGCATGGTAAT
AATGTCGAAAATGACTGTGTCATCGAAGTGCTTAGATGTATATGCAATTG
GGTATACCACAGTAAACCTGTAAGAGATTTTCTTCTGAAGATCAAATTGG
CTGAGAATCTTATCAAGAACATGAAGACTTTCATATTAAATGATCATTTA
TATTTCAAATTACGCTTGATATTTTTGATGTCAGCACACGAGAATGAATT
TCGTTTAGCTATGGTTGAATGCAGTGCAATGAGTTTGATGCTACAAATTA
TTCAAAAGATTATCTCCCAAGCTAAAAAGTGCAATGAAAGAGGAGAAGCC
TTCACCTTTGGATAGCATGACTGAAGAAGAGAAGGAGATCGAAGCAGAGA
AGTTGATGCACATGTTTGAAAGGTTGAAGGAGTTGAACGCAATCAAACCT
ATGACTGTCACCAAAGATGGAAAATTAGTGGAATTCACCGGTCCAAAGGA
TGATGAGTGAAATATGGCAGCAGACTTTCTGTTTGTATTATGTAAAGAGA
ACACAGAGCGATTGATCCGATACACTGGATATGGTAATTCTGCGGGTTTC
CTTGCAACAAGAGGGTTGATGGTACCTGGTCGACATGTTGATGGTGATTA
TTCTGAAGATGAGTTGACTGATGTGGATGATGAGCAAGTGGACGTCACTA
CTGGAACATGACATGACAAGCGTCATTATACTTTTGAAAGAACTGAGAGA
GAGAATCAAGATTCAAGATTACAGTAAAATGAAAGAAAAGACGATGGCCA
TTTTGACAGCATTTAGCTACATTTGTCGAGATGTACCTCTTATGAGAAAG
TATTTGCGTGGTGAAGTGTTACCTCCATTGAGCATCACAAAGGAGCGACC
GGAAGAACGACAAGATGCTTGCGGTGATATTGTCCGCTTGATGACCACTG
TTGATGTCATGCTAAAATTCTAACCATGTGATGGATGCACAAGGCTGTAA
GATATTTTGTGAAGTGTTTAGAGCCTCATTCAATATAACACTTGCATTAC
AAGAATGTTCTTCAGATGGTACAATTGAAAGTTGTTCTTCACTTGTTCTA
TGTTGTACTGAAGTTCTGCATCTAGACCTTCACAAGAATGCACCAGAAGA
CATTGTGACACCAATAGTCCATCTAATGGTCAATCTACCAAAAGCATGTC
TGGAGAAGCTTTGTCCTCCTGTTTCAACAGAAAATAATGAATCACTAGTC
AATGATCAAAAGGTTTTTAAGATGGATGTCATAAAAAAGTTAAATATTTT
GAAGACAGATTTCAATAATGATGAGGTTGTAACCCAATGCAAAATGGTTG
CTCGAGAGTTTTACCAACAAAATCAACAGTTGTTTGAATTCAGCTCAATA
TTAAACATTGATGATCACGCTGAATTACTCTGTCTTATATTTGATTTATT
TGAAAAGAATGGCTTTAATGAAGAACTGAAATTGAATTTGTTGTCCGTCT
TACGCTTATTGAGTAGAGATCGTAAACTTGTTCTTAGTATAAAAGATATT
GGAAAGTGTATTCAAAGCTTTGTCAAATATTTCCAAGGACAAGATACGCA
TGGTAATAATGTCGAAAATGACTGTGTCATCGAAGTGCTTAGATGTATAT
GCAATTGGGTATACCACAGTAAACCTGTAAGAGATTTTCTTCTGAAGATC
AAATTGGCTGAGAATCTTATCAAGAACATGAAGACTTTCATATTAAATGA
TCATTTATATTTCAAATTACGCTTGATATTTTTGATGTCAGCACACGAGA
ATGAATTTCGTTTAGCTATGGTTGAATGCAGTGCAATGAGTTTGATGCTA
CAAATTATTCAAAAGATTATCTCCCAAGCTAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068176-exon-scaffold_48-1575043694:401763..402500 | TCONS_00068176-exon-scaffold_48-1575043694:401763..402500 | Clytia hemisphaerica | exon |
| TCONS_00068176-exon-scaffold_48-1575043694:401260..401563 | TCONS_00068176-exon-scaffold_48-1575043694:401260..401563 | Clytia hemisphaerica | exon |
| TCONS_00068176-exon-scaffold_48-1575043694:400877..401140 | TCONS_00068176-exon-scaffold_48-1575043694:400877..401140 | Clytia hemisphaerica | exon |
| TCONS_00068176-exon-scaffold_48-1575043694:400544..400736 | TCONS_00068176-exon-scaffold_48-1575043694:400544..400736 | Clytia hemisphaerica | exon |
| TCONS_00068176-exon-scaffold_48-1575043694:399037..400341 | TCONS_00068176-exon-scaffold_48-1575043694:399037..400341 | Clytia hemisphaerica | exon |
| TCONS_00068176-exon-scaffold_48-1575043694:397303..397408 | TCONS_00068176-exon-scaffold_48-1575043694:397303..397408 | Clytia hemisphaerica | exon |
| TCONS_00068176-exon-scaffold_48-1575043694:396845..397109 | TCONS_00068176-exon-scaffold_48-1575043694:396845..397109 | Clytia hemisphaerica | exon |
| TCONS_00068176-exon-scaffold_48-1510915933:401763..402500 | TCONS_00068176-exon-scaffold_48-1510915933:401763..402500 | Clytia hemisphaerica | exon |
| TCONS_00068176-exon-scaffold_48-1510915933:401260..401563 | TCONS_00068176-exon-scaffold_48-1510915933:401260..401563 | Clytia hemisphaerica | exon |
| TCONS_00068176-exon-scaffold_48-1510915933:400877..401140 | TCONS_00068176-exon-scaffold_48-1510915933:400877..401140 | Clytia hemisphaerica | exon |
| TCONS_00068176-exon-scaffold_48-1510915933:400544..400736 | TCONS_00068176-exon-scaffold_48-1510915933:400544..400736 | Clytia hemisphaerica | exon |
| TCONS_00068176-exon-scaffold_48-1510915933:399037..400341 | TCONS_00068176-exon-scaffold_48-1510915933:399037..400341 | Clytia hemisphaerica | exon |
| TCONS_00068176-exon-scaffold_48-1510915933:397303..397408 | TCONS_00068176-exon-scaffold_48-1510915933:397303..397408 | Clytia hemisphaerica | exon |
| TCONS_00068176-exon-scaffold_48-1510915933:396845..397109 | TCONS_00068176-exon-scaffold_48-1510915933:396845..397109 | Clytia hemisphaerica | exon |
| TCONS_00068176-exon-scaffold_48-1491911889:401763..402500 | TCONS_00068176-exon-scaffold_48-1491911889:401763..402500 | Clytia hemisphaerica | exon |
| TCONS_00068176-exon-scaffold_48-1491911889:401260..401563 | TCONS_00068176-exon-scaffold_48-1491911889:401260..401563 | Clytia hemisphaerica | exon |
| TCONS_00068176-exon-scaffold_48-1491911889:400877..401140 | TCONS_00068176-exon-scaffold_48-1491911889:400877..401140 | Clytia hemisphaerica | exon |
| TCONS_00068176-exon-scaffold_48-1491911889:400544..400736 | TCONS_00068176-exon-scaffold_48-1491911889:400544..400736 | Clytia hemisphaerica | exon |
| TCONS_00068176-exon-scaffold_48-1491911889:399037..400341 | TCONS_00068176-exon-scaffold_48-1491911889:399037..400341 | Clytia hemisphaerica | exon |
| TCONS_00068176-exon-scaffold_48-1491911889:397303..397408 | TCONS_00068176-exon-scaffold_48-1491911889:397303..397408 | Clytia hemisphaerica | exon |
| TCONS_00068176-exon-scaffold_48-1491911889:396845..397109 | TCONS_00068176-exon-scaffold_48-1491911889:396845..397109 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_48 | supercontig | scaffold_48:396845..402500 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005488 | binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005488 |
binding |
Blast
BLAST of TCONS_00068176 vs. Swiss-Prot (Human)
Match: RIC8B (Synembryn-B OS=Homo sapiens GN=RIC8B PE=1 SV=2) HSP 1 Score: 129.028 bits (323), Expect = 5.081e-31 Identity = 116/370 (31.35%), Postives = 182/370 (49.19%), Query Frame = 2
Query: 479 VIEVLRCICNWVYHSKPVRDFLLKIKLAE---NLIKNMKTF-ILNDHLYFKLRLIFLMSAHENEFRLAM-VECSAMSLMLQIIQKIISQAKNSNH--VMDAQG---------CKIFCEVFRASFNITLALQECSSD----------GTIESCSSLVLCCTEVLHLDLHKNAPEDIVTPIVHLMVNLPKACLEKLCPPVSTENNES-------------------LVNDQKVFKEHDMTSVIILLKELRERI-KIQDYSKMKEKTMAILTAFSYICRDVPLMRKYLRGEVLPPLSITKERPEERQDACGDIVRLMTTVDVMLKNMAADFLFVLCKENTERLIRYTGYGNSAGFLATRGLMVPGRHVDGDYS 1450
++E L+C+CN V++S+ + L++ LA NL++ K +ND F LRL+FL+S + R + E + L+ QI++ S + +D G C I E +A FN+T+ + + + C L++ TE +LH NA V+L+ N+P +CL+ L P++ E L N+ V+ +M ++ +LL + +RI K Y + +++LT S R++ RK+L+ +VLPPL RPE +VRLMT VD+ +K +AA+FLFVLCKE + L++YTGYGN+AG LA RGL+ GR D YS
Sbjct: 114 IVESLKCLCNIVFNSQMAQQLSLELNLAAKLCNLLRKCKDRKFINDIKCFDLRLLFLLSLLHTDIRSQLRYELQGLPLLTQILESAFSIKWTDEYESAIDHNGPPLSPQETDCAI--EALKALFNVTVDSWKVHKESDSHQFRVMAAVLRHCL-LIVGPTEDKTEELHSNA--------VNLLSNVPVSCLDVLICPLTHEETAQEATTLDELPSNKTAEKETVLKNNTMVYNGMNMEAIHVLLNFMEKRIDKGSSYREGLTPVLSLLTECSRAHRNI---RKFLKDQVLPPLRDVTNRPEVGSTVRNKLVRLMTHVDLGVKQIAAEFLFVLCKERVDSLLKYTGYGNAAGLLAARGLLAGGRG-DNWYS 468
The following BLAST results are available for this feature:
|
