TCONS_00068176-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00068176-protein
Unique NameTCONS_00068176-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length518

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00068176-protein ID=TCONS_00068176-protein|Name=TCONS_00068176-protein|organism=Clytia hemisphaerica|type=polypeptide|length=518bp
MDVIKKLNILKTDFNNDEVVTQCKMVAREFYQQNQQLFEFSSILNIDDHA
ELLCLIFDLFEKNGFNEELKLNLLSVLRLLSRDRKLVLSIKDIGKCIQSF
VKYFQGQDTHGNNVENDCVIEVLRCICNWVYHSKPVRDFLLKIKLAENLI
KNMKTFILNDHLYFKLRLIFLMSAHENEFRLAMVECSAMSLMLQIIQKII
SQAKNSNHVMDAQGCKIFCEVFRASFNITLALQECSSDGTIESCSSLVLC
CTEVLHLDLHKNAPEDIVTPIVHLMVNLPKACLEKLCPPVSTENNESLVN
DQKVFKEHDMTSVIILLKELRERIKIQDYSKMKEKTMAILTAFSYICRDV
PLMRKYLRGEVLPPLSITKERPEERQDACGDIVRLMTTVDVMLKNMAADF
LFVLCKENTERLIRYTGYGNSAGFLATRGLMVPGRHVDGDYSEDELTDVD
DEQVDVTTGAMKEEKPSPLDSMTEEEKEIEAEKLMHMFERLKELNAIKPM
TVTKDGKLVEFTGPKDDE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_042552XLOC_042552Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00068176TCONS_00068176Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019318Gua_nucleotide_exch_fac_Ric8
IPR011989ARM-like
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 474..494
IPR019318Guanine nucleotide exchange factor, Ric8PFAMPF10165Ric8coord: 74..507
e-value: 1.7E-79
score: 267.9
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 2..490
e-value: 1.1E-4
score: 20.3
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 52..195
coord: 326..411

Blast
[Close]
BLAST of TCONS_00068176-protein vs. Swiss-Prot (Human)
Match: RIC8A (Synembryn-A OS=Homo sapiens GN=RIC8A PE=1 SV=3)

HSP 1 Score: 174.481 bits (441), Expect = 3.830e-48
Identity = 155/505 (30.69%), Postives = 251/505 (49.70%), Query Frame = 0 
Query:   28 REFYQQNQQLFEFSSILNIDDHAELLCLIFDLFEKNGFNEELKLNLLSVLRLLSRDRKLVLSIKDIGKCIQSFVKYFQGQDTHGNNVEN---DCVIEVLRCICNWVYHSKPVRDFL-----LKIKLAENLIKNMKTFILNDHLYFKLRLIFLMSAHENEFRLAMVE----CSAMSLMLQIIQKIISQAKNSNHVMDAQGCKIFCEVFRASFNITLALQECSSD----GTIESCSSLVLCCTEVLHLDLHKNAPEDIVTPIVHLMVNLPKACLEKLCPPVSTENNESLVNDQKVFKEHDMTSVIILLKELRERIKIQDYSKMKEKTMAILTAFSYICRDVPLMRKYLRGEVLPPLSITKERPEERQDACGDIVRLMTTVDVMLKNMAADFLFVLCKENTERLIRYTGYGNSAGFLATRGLMVPGRHVDGDYSEDELTDVDD-----EQVDVTTGAMKEEKPSPLDSMTEEEKEIEAEKLMHMFERLKELNAIKPMTVTKDGKLVEF 511
            R + Q++ Q F F      +D   L  L+  + E+ G     ++  L  +R+LSRDR  +       + +Q+   Y     + G+  E+   D V+E L+C+CN V  S PV   L     L +KL E +    +    +D  +F LRL+FL++A   + R  + +       ++  L++   +  +      ++ +Q  +   E+ +  FNITL   +   D           +L+  C   + +    +  E+     V+L+ NLP  CL+ L   ++ E +     D   F   +M  +  LL  L +R+      ++KE    +L+  +   R     RK+L+ +VLPPL   + RPE  +     +VRLMT +D  +K +AA+FLFVLC E+  R I+YTGYGN+AG LA RGLM  GR  +G YSEDE TD D+       ++  TG ++E+ P+P++ MTEE+KE EA KL+ MF++L     I+PM ++  G L   
Sbjct:   23 RSYNQEHSQSFTFDDAQQ-EDRKRLAELLVSVLEQ-GLPPSHRVIWLQSVRILSRDRNCLDPFTS-RQSLQALACYADISVSEGSVPESADMDVVLESLKCLCNLVL-SSPVAQMLAAEARLVVKLTERVGLYRERSFPHDVQFFDLRLLFLLTALRTDVRQQLFQELKGVRLLTDTLELTLGVTPEGNPPPTLLPSQETERAMEILKVLFNITLDSIKGEVDEEDAALYRHLGTLLRHC---VMIATAGDRTEEFHGHAVNLLGNLPLKCLDVL---LTLEPH----GDSTEFMGVNMDVIRALLIFLEKRL--HKTHRLKESVAPVLSVLTECARMHRPARKFLKAQVLPPLRDVRTRPEVGEMLRNKLVRLMTHLDTDVKRVAAEFLFVLCSESVPRFIKYTGYGNAAGLLAARGLMAGGR-PEGQYSEDEDTDTDEYKEAKASINPVTGRVEEKPPNPMEGMTEEQKEHEAMKLVTMFDKLSRNRVIQPMGMSPRGHLTSL 510
The following BLAST results are available for this feature:
BLAST of TCONS_00068176-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RIC8A3.830e-4830.69Synembryn-A OS=Homo sapiens GN=RIC8A PE=1 SV=3[more]
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