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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068135 ID=TCONS_00068135|Name=TCONS_00068135|organism=Clytia hemisphaerica|type=transcript|length=6524bpRun BLAST on NCBI protein sequence of TCONS_00068135-protein >TCONS_00068135-protein ID=TCONS_00068135-protein|Name=TCONS_00068135-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1630bp MNTFSFIISFFVISSTQLDCTLVLKNQRLYFLINGNRYILYPTDQSDNSRRun BLAST on NCBI transcript from alignment at scaffold_48:351539..371714+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00068135 ID=TCONS_00068135|Name=TCONS_00068135|organism=Clytia hemisphaerica|type=transcript|length=20176bp|location=Sequence derived from alignment at scaffold_48:351539..371714+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_48:351539..371714+ >TCONS_00068135 ID=TCONS_00068135|Name=TCONS_00068135|organism=Clytia hemisphaerica|type=CDS|length=122325bp|location=Sequence derived from alignment at scaffold_48:351539..371714+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00068135 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 127.487 bits (319), Expect = 8.027e-29 Identity = 53/137 (38.69%), Postives = 76/137 (55.47%), Query Frame = 2
Query: 1859 WSPWSQCSASCS-GTRKRTRQCYD--------YCQGDDEEIEKCGARRCPVHGGFSNWSHWTRCDRTCGGGHRNKTRQCNQPLPRFRGNGCVGSKIVAERCNVHFCPVDAFWSGWTSWSGCDKPCNNGSFVRTRYCN 2242
W PW CS SC GT+ R R C + YC G + +++ C R CP+HG ++ W+ W+ C +CGGG R +TR C+ P+P++ G C GS + ++ CN CP WS W+ W C + CN G R R C+
Sbjct: 4649 WQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCD 4785 HSP 2 Score: 124.405 bits (311), Expect = 6.169e-28 Identity = 93/326 (28.53%), Postives = 134/326 (41.10%), Query Frame = 2
Query: 1379 YSDWITAR-CPIKCKRAQSKRFRKCGIDIEWFDEHNSTICYDNKDLEMDIDCLD----LNGCTGTRNYLANEGSSCQNFCTSKGMQCTNP-IQTGNLP---DVFDDVILNYQIDQTHTKWQKEYAPYCLNSTCAEYIDVPAVVNCSVQPPQ--------GYRRLCYCQEK---VDIGFGDWSPWSQCSASCSG-TRKRTRQCYD--------YCQGDDEEIEKCGARRCPVHGGFSNWSHWTRCDRTCGGGHRNKTRQCNQPLPRFRGNGCVGSKIVAERCNVHFCPVDAFWSGWTSWSGCDKPCNNGSFVRTRYCNK--ALYGGK 2263
+S W R C + C + KR R C + + C DLEM +C + ++G + SC ++ C NP +Q G P + + ++ N + H W + +C + A + C+ PP ++ C E+ + + W+ WS CS SC G R+RTR C D C+G D + + C + CP HG +S WS W C RTC GG + R C+ P P G C G +RCN CPVD W W SWS C C G R R C+ + GG+
Sbjct: 4532 FSQWSAWRACSVTCGKGIQKRSRLCN---QPLPANGGKPC-QGSDLEMR-NCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARL-CNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGR 4851 HSP 3 Score: 124.02 bits (310), Expect = 9.624e-28 Identity = 61/157 (38.85%), Postives = 79/157 (50.32%), Query Frame = 2
Query: 1835 KVDIGFGDWSPWSQCSASCS-GTRKRTRQCYDY--------CQGDDEEIEKCGARRCPVHGGFSNWSHWTRCDRTCGGGHRNKTRQCNQPLPRFRGNGCVGSKIVAERCNVHFCPVDAFWSGWTSWSGCDKPCNNGSFVRTRYCNK--ALYGGKEYC 2272
+V GF WS W CS +C G +KR+R C CQG D E+ C + CPV G +S WS W C R+CG G++ +TR CN P + G C G+ + CN+ CPV WS W W C + C G+ R R CN +GG YC
Sbjct: 4527 QVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGS-YC 4682 HSP 4 Score: 97.4413 bits (241), Expect = 1.000e-19 Identity = 51/122 (41.80%), Postives = 60/122 (49.18%), Query Frame = 2
Query: 1982 VHGGFSNWSHWTRCDRTCGGGHRNKTRQCNQPLPRFRGNGCVGSKIVAERCNVHFCPVDAFWSGWTSWSGCDKPCNNGSFVRTRYCNK--ALYGGKEYCSPHNVSPNGRMAEERRSCNEFPC 2341
VHGGFS WS W C TCG G + ++R CNQPLP G C GS + C CPVD WS W+ W C + C G+ RTR CN +GG+ P A E CN PC
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGR---------PCEGNAVEIIMCNIRPC 4640 HSP 5 Score: 89.7373 bits (221), Expect = 1.924e-17 Identity = 42/112 (37.50%), Postives = 60/112 (53.57%), Query Frame = 2
Query: 1853 GDWSPWS---QCSASCSGTR-KRTRQCYD--------YCQGDDEEIEKCGARRCPVHGGFSNWSHWTRCDRTCGGGHRNKTRQCNQPLPRFRGNGCVGSKIVAERCNVHFCP 2152
G+WSPWS CS +C+G + +R R C + C G D +I++C CPV G + +W W++C +CGGG + + R C+ P+P G C G RCNV CP
Sbjct: 4758 GNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869 The following BLAST results are available for this feature:
BLAST of TCONS_00068135 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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