TCONS_00068135-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00068135-protein
Unique NameTCONS_00068135-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1630

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00068135-protein ID=TCONS_00068135-protein|Name=TCONS_00068135-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1630bp
MNTFSFIISFFVISSTQLDCTLVLKNQRLYFLINGNRYILYPTDQSDNSR
IKVEIESTLLTTPRAREATFLPDGKIEFDFEFSSYCIGLDDNVFVIKQNP
SSCSSFTVDEYKLKVLSGNKYTCTDTESFDFRRIPSGSCPYSFFHESIVA
STSSSSAPSPQQSSTSLLPSSSSPDEMLTITPVADILQSTRYNLPPSTEV
INPTRSTPTPLQDQATTITSSIPIAGDLESTLPIVPSLKDDVVQVMTSSA
TAHHNIDTLVEPIEPTFSQLTQNSVSSSTESSGSFTNVASATLSIDKAAT
LSPSPSTKNIQSSSSSASSFKPGFYAIYSDWITARCPIKCKRAQSKRFRK
CGIDIEWFDEHNSTICYDNKDLEMDIDCLDLNGCTGTRNYLANEGSSCQN
FCTSKGMQCTNPIQTGNLPDVFDDVILNYQIDQTHTKWQKEYAPYCLNST
CAEYIDVPAVVNCSVQPPQGYRRLCYCQEKVDIGFGDWSPWSQCSASCSG
TRKRTRQCYDYCQGDDEEIEKCGARRCPVHGGFSNWSHWTRCDRTCGGGH
RNKTRQCNQPLPRFRGNGCVGSKIVAERCNVHFCPVDAFWSGWTSWSGCD
KPCNNGSFVRTRYCNKALYGGKEYCSPHNVSPNGRMAEERRSCNEFPCTE
TFATLELKFDGVFTKSLSNRSSQDFKKLEELLLKEFNETFTNAFGSSSIK
KMVLNNVRNGSIIANTTLTFSSFDSFQFIIIQDSIEIENSIGKLDLTAAS
ASGLQTMYNIGPEVPIYPPTNISIQSLDSSTLLVTWEKPFTSSNYTITGY
IVFFRSTFSSSVDYSKYATNHTMASLTGLSAGTEYIVRILSYTKDGNGVA
SKSITYRTDELIPDSAPTDLQTVGFDSNSILLEWKGLPREGWNGRPIGYR
INTFIDDNLIKNESSDFMQTFHLIENLVPSSRYSFEVCAFNSKGKGPCDR
TMGSTLHSKPTRGPPNFKALINRTHDSLMLHWQPPPVETIHGDFLSYTLT
WFLQSPPDGKRNSISLHPSLTSYHVTGLQPNIMYRLVIQAVNQYGEGVSS
EIIEKTCACPEKVSTSYYLLSPYVTQSKHSAAGIFLDILKQMIPSICGQC
QRSNGVLNTVIDEKHNGRNAFAQKSSELQAVQEIDEYTDLTFPIIGTKYL
DVFMDYPFISIIQHPGVVLIARDKLWNEIINEMIFAILDVWPLVVLNNLI
MLVAGFIVWLLDGRIVRKGDFSNKVLQGLQEGWYWAFITQGTHGYGDFKP
TQFISRLAAVFYIFIALVMSSLMVGSIVTSITTIEDASNVKIYGTKIGAI
NGSFEERVGLLRNGKMNQDGVYFTTDQLRDVLLAREVEGILVDAYTAGSR
SQLFERPELRAVNVYKYLRSYGFVMSGNLVNLAVESRDWVSANQQEILRL
VQESTVRMEASEAKPIKSIFSADSEAYQLSIMVLLLCLVVATIVGVVYQC
WKNKRKRRVSALRSKTKRTMWKIQYDARVARIEESNEIIKNFYDQFTENV
CNLEEEHAKRLVQYYERERGRCDVANMKPLLRLKRRLFRSTKDRKRARSF
IYWENEGFEDCSLPSPKLRMSVRQRGHPSIQVTNEEDRTWVVPFGDDGQS
RFSDDDVDSNEGSSARSVDGKISINSLTIE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_042530XLOC_042530Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00068135TCONS_00068135Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
IPR003961FN3_dom
IPR013783Ig-like_fold
IPR000082SEA_dom
IPR013099K_chnl_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 485..528
e-value: 1.2E-8
score: 44.7
coord: 533..585
e-value: 6.5E-7
score: 39.0
coord: 590..649
e-value: 7.3E-6
score: 35.5
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 479..528
e-value: 2.0E-7
score: 30.8
coord: 586..648
e-value: 2.5E-8
score: 33.7
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 529..584
e-value: 1.5E-11
score: 44.0
IPR000884Thrombospondin type-1 (TSP1) repeatPFAMPF00090TSP_1coord: 534..584
e-value: 5.2E-8
score: 32.9
coord: 486..527
e-value: 3.8E-5
score: 23.7
coord: 591..625
e-value: 8.6E-5
score: 22.6
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 482..528
score: 11.633
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 587..649
score: 10.119
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 530..585
score: 11.379
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 527..584
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 584..648
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 484..522
IPR003961Fibronectin type IIISMARTSM00060FN3_2coord: 864..946
e-value: 7.8E-8
score: 42.0
coord: 962..1047
e-value: 2.2E-8
score: 43.8
coord: 765..848
e-value: 1.5E-9
score: 47.7
IPR003961Fibronectin type IIIPFAMPF00041fn3coord: 970..1050
e-value: 3.6E-14
score: 52.8
coord: 865..947
e-value: 2.6E-7
score: 30.8
coord: 768..851
e-value: 4.9E-12
score: 45.9
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 768..861
score: 20.458
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 963..1061
score: 19.669
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 866..961
score: 14.777
IPR003961Fibronectin type IIICDDcd00063FN3coord: 768..858
e-value: 2.42072E-15
score: 73.2995
IPR003961Fibronectin type IIICDDcd00063FN3coord: 865..947
e-value: 3.22344E-9
score: 55.1951
IPR003961Fibronectin type IIICDDcd00063FN3coord: 964..1054
e-value: 1.54697E-11
score: 62.1287
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 768..947
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 918..1056
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 956..1065
e-value: 2.8E-15
score: 55.8
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 861..955
e-value: 3.6E-13
score: 49.1
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 763..860
e-value: 7.7E-18
score: 64.4
NoneNo IPR availableGENE3D1.10.287.70coord: 1184..1511
e-value: 2.5E-12
score: 46.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1596..1617
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 154..175
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 1191..1281
IPR000082SEA domainGENE3D3.30.70.960coord: 649..730
e-value: 1.2E-8
score: 34.5
IPR013099Potassium channel domainPFAMPF07885Ion_trans_2coord: 1231..1281
e-value: 1.1E-5
score: 25.2

Blast
[Close]
BLAST of TCONS_00068135-protein vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 1.742e-31
Identity = 94/330 (28.48%), Postives = 134/330 (40.61%), Query Frame = 0 
Query:  324 FYAIYSDWITAR-CPIKCKRAQSKRFRKCGIDIEWFDEHNSTICYDNKDLEMDIDCLD----LNGCTGTRNYLANEGSSCQNFCTSKGMQCTNP-IQTGNLP---DVFDDVILNYQIDQTHTKWQKEYAPYCLNSTCAEYIDVPAVVNCSVQPPQGYRRLC--------YCQEK---VDIGFGDWSPWSQCSASCSG-TRKRTRQCYD--------YCQGDDEEIEKCGARRCPVHGGFSNWSHWTRCDRTCGGGHRNKTRQCNQPLPRFRGNGCVGSKIVAERCNVHFCPVDAFWSGWTSWSGCDKPCNNGSFVRTRYCNK--ALYGGK 622
             +  +S W   R C + C +   KR R C    +    +    C    DLEM  +C +    ++G     +       SC     ++   C NP +Q G  P   +  + ++ N +    H  W         + +C +     A + C+  PP      C         C E+   +   +  W+ WS CS SC G  R+RTR C D         C+G D + + C +  CP HG +S WS W  C RTC GG   + R C+ P P   G  C G     +RCN   CPVD  W  W SWS C   C  G   R R C+    + GG+
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCN---QPLPANGGKPC-QGSDLEMR-NCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARL-CNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGR 4851

HSP 2 Score: 128.642 bits (322), Expect = 1.811e-29
Identity = 61/157 (38.85%), Postives = 79/157 (50.32%), Query Frame = 0 
Query:  480 KVDIGFGDWSPWSQCSASCS-GTRKRTRQCYDY--------CQGDDEEIEKCGARRCPVHGGFSNWSHWTRCDRTCGGGHRNKTRQCNQPLPRFRGNGCVGSKIVAERCNVHFCPVDAFWSGWTSWSGCDKPCNNGSFVRTRYCNK--ALYGGKEYC 625
            +V  GF  WS W  CS +C  G +KR+R C           CQG D E+  C  + CPV G +S WS W  C R+CG G++ +TR CN P  +  G  C G+ +    CN+  CPV   WS W  W  C + C  G+  R R CN     +GG  YC
Sbjct: 4527 QVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGS-YC 4682

HSP 3 Score: 100.523 bits (249), Expect = 6.351e-21
Identity = 51/122 (41.80%), Postives = 60/122 (49.18%), Query Frame = 0 
Query:  529 VHGGFSNWSHWTRCDRTCGGGHRNKTRQCNQPLPRFRGNGCVGSKIVAERCNVHFCPVDAFWSGWTSWSGCDKPCNNGSFVRTRYCNK--ALYGGKEYCSPHNVSPNGRMAEERRSCNEFPC 648
            VHGGFS WS W  C  TCG G + ++R CNQPLP   G  C GS +    C    CPVD  WS W+ W  C + C  G+  RTR CN     +GG+         P    A E   CN  PC
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGR---------PCEGNAVEIIMCNIRPC 4640

HSP 4 Score: 95.1301 bits (235), Expect = 2.651e-19
Identity = 49/143 (34.27%), Postives = 68/143 (47.55%), Query Frame = 0 
Query:  463 CSVQPPQGYRRLC--------YCQEKVDIGFGDWSPWS---QCSASCSGTR-KRTRQCYD--------YCQGDDEEIEKCGARRCPVHGGFSNWSHWTRCDRTCGGGHRNKTRQCNQPLPRFRGNGCVGSKIVAERCNVHFCP 585
            CS   PQ   R C        +C        G+WSPWS    CS +C+G + +R R C +         C G D +I++C    CPV G + +W  W++C  +CGGG + + R C+ P+P   G  C G      RCNV  CP
Sbjct: 4727 CSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869
The following BLAST results are available for this feature:
BLAST of TCONS_00068135-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN11.742e-3128.48Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2[more]
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