TCONS_00068044 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068044
Unique NameTCONS_00068044
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1286

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068044 ID=TCONS_00068044|Name=TCONS_00068044|organism=Clytia hemisphaerica|type=transcript|length=1286bp
ATAGCTTTCAGGACCGGAGTTGGATCGTGAACGTCCAAAAGATGTCGAAA
CGATGTTCGATAAAGTCCGTGATTTTTACATCGATTCCAATACAACCAAT
GTTTTACCAGAAGAAGTGAGGAAAAGCATCTGGGCTGTATACAAATTACA
TACAAGAGACTGGGACCGAAGTACGTCTCCTGTTTCACCGATCCCCACAT
CACCCCGATTCCCGACATACCCCAAAAATAATGTATGGATAAATCCGAAA
TTGCTGGAGGAAAGAAATCGAAAACTTAGCTCCGGATCTACAGTTGATTG
GAATGATTTTTACATGGGAGACGATTCCGAATTGGCAGGTTTCCATAGCG
ACGGTGGACAATATCATGACCAAGGatcaTCAACAGAAGACGAAGCATTA
GATGATTATGAGGAATTTCTCCGTCAAACTGGTCAAATTTGAAAAGAGGG
CGTCACCACAGACGCCCCTTGAACACCCTATGTGGCCCAGCCATCCACCA
ATCAACAAAAAATGGGTGTGTTCAACCACATCGTGAAATTCTTGACCCGC
CATCATTACCATGTGGTGACCAAACAACAGAGTATTTTAACTTCATCACT
GCAACATGATTGGTTCATTGAAGCAACCTTTTGTTTTAgccttcaaattt
tttttggatgtaAAAATCGCCGATTTTATTAGAATTTAATGATAAGAAGC
ATGGAATGTGTTTACCGATTTTATCTAAAGATAGTATCTTTTTCGAGTTT
TTTGAGGTTTTCCAGTTGCCTGagttttacttaattttgcacTGTTATAC
AAGAAATCtgtaaatttctaaattttctgaAAACGAAAATCCTGCTAGTT
AGAGCGTAACCTTTCCTATAATAATCTACCCTTACCTGACCTTTTgtgtt
cttttttaaaaaagtctGTCAGGTATTAGGTACAGTAAAGGGTTACATTT
TATACTTTGCTAACCTCAATATTTCTACCCATGTGGAATACCCACGTTTA
TTCAACGTTCATGTAAAgatgttagatggacgttgCTGACGTGACGTTTA
GTGTTGACTGGGCAGCTTTCCTTGTCTTTCCACTGcctatttttgttttt
ctacagtctttttttcaactttctgcactttttataagattcTATAAgag
aaatttatatttatatataaaGTTTATAAAGTTTAAGATTTACATATTTC
GTAGACAATAAGGATTGAtttgaaatacaaaaatagGTATATTATAGTAA
TCGTTCTGGTAagaaatttgtgtttttattgTCTAC
Run BLAST on NCBI

protein sequence of TCONS_00068044-protein

>TCONS_00068044-protein ID=TCONS_00068044-protein|Name=TCONS_00068044-protein|organism=Clytia hemisphaerica|type=polypeptide|length=129bp
MFDKVRDFYIDSNTTNVLPEEVRKSIWAVYKLHTRDWDRSTSPVSPIPTS
PRFPTYPKNNVWINPKLLEERNRKLSSGSTVDWNDFYMGDDSELAGFHSD
GGQYHDQGSSTEDEALDDYEEFLRQTGQI
Run BLAST on NCBI

transcript from alignment at scaffold_478:578892..582297-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068044 ID=TCONS_00068044|Name=TCONS_00068044|organism=Clytia hemisphaerica|type=transcript|length=3406bp|location=Sequence derived from alignment at scaffold_478:578892..582297- (Clytia hemisphaerica)
ATAGCTTTCAGGACCGGAGTTGGATCGTGAACGTCCAAAAGATGTCGAAA
CGATGTTCGATAAAGTCCGTGATTTTTACATCGATTCCAATACAACCAAT
GTTTTACCAGAGTAAGCTCTTCCCTTTTAACGTTGTTTGAAATGAGCTGA
TATATTACTTTGGTAAAAAATATTTATTGGCAAAAATCTTTATTGGCAAC
AATTTTCACCGGCTAAAACTTCGTCGGTAAAAATCTTCGTTACCCAACGA
TATTTTTTCGTCACTTGTTTTTAATTAAATTTTACCGACAAAGGAGAAAA
CTTTTTAAATTCATAACCTATATGCTGCTATCTACTATGTACATCTGAAA
TGTCCAAGGTTCAAACTCGTTTCTTTTCATATAGAGAAGTGAGGAAAAGC
ATCTGGGCTGTATACAAATTACATACAAGAGACTGGGACCGAAGTACGTC
TCCTGTTTCACCGATCCCCACATCACCCCGATTCCCGACATACCCCAAAA
ATAATGTAAGTAGATATGCGGTTTATTTTGTTACGCTTGAATTTAAAGTA
AACTTTGCTTTCTAACTAGCCCGGGCTCCACTTAAGTAAGGCTTCTTAAT
AGACCGCATCAAGCAGAGAAGTGTCACAACCTTGCGCACCGTAGCCGAAT
GTTGGACCTTTATGTTGGACCTTAATTATAACTGGACTTGAGGAAGTAAA
TCTTAAAATCAAATATCACCCTATTATATTTACAGAACTTATTCATTACC
TATTAAATAATGGAATTTTGTCTTGAATTTTTTCAGGTATGGATAAATCC
GAAATTGCTGGAGGAAAGAAATCGAAAACTTAGCTCCGGATCTACAGTTG
GTAAGAAAAGTGAATTCTCAATTCCAAAAACAAGTATGGGAAATTAAACC
TCAAAGTGTAAGGAGATGCTAAAACAAAAAGCGTCTGCGCAGTAACGTCA
ATTCTACAAAACATTCGATTTTTGACGTCACTTTAAACTTTCGAGCTCTT
GCAGTAGGAAAAAATTGAAATGCGCCAAAACACTTTGAAAGGTTTCTTTT
TTGAGAAAATATCGAAGTGTAACTCACCAAGAAACGGAATGAAAAAATCC
CAGTGTTTAGTGAGGTACTCGCTTCTACCTAGGTTGAAATCCTCATTATC
TTTTACGTGACTTCATCATCGTTAAGCTCTAGTTTAGACGGCGCCCTTTT
TGCCCTGCCTATTCTAATTGTGAATTAAATTTGGCATAAAGTTGGCTGTC
TAAAGTCAATGCATAGCCCTCTTTTGACGTCAATGCAATGTCTTCTTTCA
ACCTTTTCCAAGCGAAGAAGTGGGCCGTCTAAACTAGAGCTCAGAGACTT
GAATTATGAATGTAACTTACGTACCCTTAAGGGAACATTTTTTTATTATC
AACTAAATCACCATTTAGCTCACTCATATTCTTTCTAATGAATTTGCAAA
CTGTCTTTTCTGTGAACTATTACTTAATACTCGTATTTTTGTCAGATTGG
AATGATTTTTACATGGGAGACGATTCCGAATTGGCAGGTTTCCATAGCGA
CGGTGGACAATATCATGACCAAGGGTACGTTTTTTTTCAAAGTTTCTGTA
CCAAAGTGCTTCTTTTACCATCTAGACGGAGGCCAAAAGTAATTTCTTTT
TAGTAGGTTGAATACACCTCCTTCTCACAGACCTGGTAGGAGTTTTTCAG
TCAATGGGAGTAAAAATAACGGACCTGAACTTGATAGGGATCGATACTCA
CATATTTCAATTCTTTTGTTTTAAAGTCAGAAAAATCAGCGAAGACGGAA
AAAATGGCATAACATTTTGCACTGAGGATTCGTTTATTTGATTATTTTCG
GTGGGGACCAAAATTGTAGGGTAATTTTCCACCGGGGACGATATTTTGGA
CAATTTTTCCAGTGGAAAGAGGTCCCAGTGGGTCTGTGAAAAGGGGGTGT
AACAGTTGCTGAACTAAATTACACTCCTTCTTGGACCTACCTGGGAGTTC
CTCAAAATATATACAATCTATAACTTGTGTTTAGTTGCCAACTGATTTTC
CTTGTGATTGGCGCGTTCAATTTTCTGTTTTTTTTGTACAAAATAAACAA
TCATAAAGCCTTGATGGATGTCAAAGTAAATTCATTCTAATAGGCTGAAC
AATGGACCTTTTCATGAATTATTTTGAGTGCAACGACTGTCTCGTTTTGA
AACCATTACAAAGCCAATTAAATCCCTTGAGTCTTCAAGCGTTACTTTTA
TGGATAGGGTAAACTAGTTACGAACTATGAACTTATGAACTCCCCTGGGA
CTCAATTACCATAGCAATATTTTGAAAGCGAGGTATGTGTTGCTCGTCAT
GTGATATATGGAAAGATCTATTGCTTAGTTATACTTCTCCTATCCATTTT
GGAGCTATTTGGGGAGGTCCTATAAAGTAAATTCGTTCTGTTGCTGAAAC
TAAATAACCTTCTTTCTCCTTCCTATGTTCTTTTTTCATTTTCAGATCAT
CAACAGAAGACGAAGCATTAGATGATTATGAGGAATTTCTCCGTCAAACT
GGTCAAATTTGAAAAGAGGGCGTCACCACAGACGCCCCTTGAACACCCTA
TGTGGCCCAGCCATCCACCAATCAACAAAAAATGGGTGTGTTCAACCACA
TCGTGAAATTCTTGACCCGCCATCATTACCATGTGGTGACCAAACAACAG
AGTATTTTAACTTCATCACTGCAACATGATTGGTTCATTGAAGCAACCTT
TTGTTTTAGCCTTCAAATTTTTTTTGGATGTAAAAATCGCCGATTTTATT
AGAATTTAATGATAAGAAGCATGGAATGTGTTTACCGATTTTATCTAAAG
ATAGTATCTTTTTCGAGTTTTTTGAGGTTTTCCAGTTGCCTGAGTTTTAC
TTAATTTTGCACTGTTATACAAGAAATCTGTAAATTTCTAAATTTTCTGA
AAACGAAAATCCTGCTAGTTAGAGCGTAACCTTTCCTATAATAATCTACC
CTTACCTGACCTTTTGTGTTCTTTTTTAAAAAAGTCTGTCAGGTATTAGG
TACAGTAAAGGGTTACATTTTATACTTTGCTAACCTCAATATTTCTACCC
ATGTGGAATACCCACGTTTATTCAACGTTCATGTAAAGATGTTAGATGGA
CGTTGCTGACGTGACGTTTAGTGTTGACTGGGCAGCTTTCCTTGTCTTTC
CACTGCCTATTTTTGTTTTTCTACAGTCTTTTTTTCAACTTTCTGCACTT
TTTATAAGATTCTATAAGAGAAATTTATATTTATATATAAAGTTTATAAA
GTTTAAGATTTACATATTTCGTAGACAATAAGGATTGATTTGAAATACAA
AAATAGGTATATTATAGTAATCGTTCTGGTAAGAAATTTGTGTTTTTATT
GTCTAC

Coding sequence (CDS) from alignment at scaffold_478:578892..582297-

>TCONS_00068044 ID=TCONS_00068044|Name=TCONS_00068044|organism=Clytia hemisphaerica|type=CDS|length=1950bp|location=Sequence derived from alignment at scaffold_478:578892..582297- (Clytia hemisphaerica)
ATCATCAACAGAAGACGAAGCATTAGATGATTATGAGGAATTTCTCCGTC
AAACTGGTCAAATTTGAATTGGAATGATTTTTACATGGGAGACGATTCCG
AATTGGCAGGTTTCCATAGCGACGGTGGACAATATCATGACCAAGGGTAT
GGATAAATCCGAAATTGCTGGAGGAAAGAAATCGAAAACTTAGCTCCGGA
TCTACAGTTGAGAAGTGAGGAAAAGCATCTGGGCTGTATACAAATTACAT
ACAAGAGACTGGGACCGAAGTACGTCTCCTGTTTCACCGATCCCCACATC
ACCCCGATTCCCGACATACCCCAAAAATAATATGTTCGATAAAGTCCGTG
ATTTTTACATCGATTCCAATACAACCAATGTTTTACCAGAATCATCAACA
GAAGACGAAGCATTAGATGATTATGAGGAATTTCTCCGTCAAACTGGTCA
AATTTGAATTGGAATGATTTTTACATGGGAGACGATTCCGAATTGGCAGG
TTTCCATAGCGACGGTGGACAATATCATGACCAAGGGTATGGATAAATCC
GAAATTGCTGGAGGAAAGAAATCGAAAACTTAGCTCCGGATCTACAGTTG
AGAAGTGAGGAAAAGCATCTGGGCTGTATACAAATTACATACAAGAGACT
GGGACCGAAGTACGTCTCCTGTTTCACCGATCCCCACATCACCCCGATTC
CCGACATACCCCAAAAATAATATGTTCGATAAAGTCCGTGATTTTTACAT
CGATTCCAATACAACCAATGTTTTACCAGAATCATCAACAGAAGACGAAG
CATTAGATGATTATGAGGAATTTCTCCGTCAAACTGGTCAAATTTGAATT
GGAATGATTTTTACATGGGAGACGATTCCGAATTGGCAGGTTTCCATAGC
GACGGTGGACAATATCATGACCAAGGGTATGGATAAATCCGAAATTGCTG
GAGGAAAGAAATCGAAAACTTAGCTCCGGATCTACAGTTGAGAAGTGAGG
AAAAGCATCTGGGCTGTATACAAATTACATACAAGAGACTGGGACCGAAG
TACGTCTCCTGTTTCACCGATCCCCACATCACCCCGATTCCCGACATACC
CCAAAAATAATATGTTCGATAAAGTCCGTGATTTTTACATCGATTCCAAT
ACAACCAATGTTTTACCAGAATCATCAACAGAAGACGAAGCATTAGATGA
TTATGAGGAATTTCTCCGTCAAACTGGTCAAATTTGAATTGGAATGATTT
TTACATGGGAGACGATTCCGAATTGGCAGGTTTCCATAGCGACGGTGGAC
AATATCATGACCAAGGGTATGGATAAATCCGAAATTGCTGGAGGAAAGAA
ATCGAAAACTTAGCTCCGGATCTACAGTTGAGAAGTGAGGAAAAGCATCT
GGGCTGTATACAAATTACATACAAGAGACTGGGACCGAAGTACGTCTCCT
GTTTCACCGATCCCCACATCACCCCGATTCCCGACATACCCCAAAAATAA
TATGTTCGATAAAGTCCGTGATTTTTACATCGATTCCAATACAACCAATG
TTTTACCAGAATCATCAACAGAAGACGAAGCATTAGATGATTATGAGGAA
TTTCTCCGTCAAACTGGTCAAATTTGAATTGGAATGATTTTTACATGGGA
GACGATTCCGAATTGGCAGGTTTCCATAGCGACGGTGGACAATATCATGA
CCAAGGGTATGGATAAATCCGAAATTGCTGGAGGAAAGAAATCGAAAACT
TAGCTCCGGATCTACAGTTGAGAAGTGAGGAAAAGCATCTGGGCTGTATA
CAAATTACATACAAGAGACTGGGACCGAAGTACGTCTCCTGTTTCACCGA
TCCCCACATCACCCCGATTCCCGACATACCCCAAAAATAATATGTTCGAT
AAAGTCCGTGATTTTTACATCGATTCCAATACAACCAATGTTTTACCAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042479XLOC_042479Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068044-exon-scaffold_478-1575043694:582187..582297TCONS_00068044-exon-scaffold_478-1575043694:582187..582297Clytia hemisphaericaexon
TCONS_00068044-exon-scaffold_478-1575043694:581793..581913TCONS_00068044-exon-scaffold_478-1575043694:581793..581913Clytia hemisphaericaexon
TCONS_00068044-exon-scaffold_478-1575043694:581448..581511TCONS_00068044-exon-scaffold_478-1575043694:581448..581511Clytia hemisphaericaexon
TCONS_00068044-exon-scaffold_478-1575043694:580724..580802TCONS_00068044-exon-scaffold_478-1575043694:580724..580802Clytia hemisphaericaexon
TCONS_00068044-exon-scaffold_478-1575043694:578892..579802TCONS_00068044-exon-scaffold_478-1575043694:578892..579802Clytia hemisphaericaexon
TCONS_00068044-exon-scaffold_478-1510915933:582187..582297TCONS_00068044-exon-scaffold_478-1510915933:582187..582297Clytia hemisphaericaexon
TCONS_00068044-exon-scaffold_478-1510915933:581793..581913TCONS_00068044-exon-scaffold_478-1510915933:581793..581913Clytia hemisphaericaexon
TCONS_00068044-exon-scaffold_478-1510915933:581448..581511TCONS_00068044-exon-scaffold_478-1510915933:581448..581511Clytia hemisphaericaexon
TCONS_00068044-exon-scaffold_478-1510915933:580724..580802TCONS_00068044-exon-scaffold_478-1510915933:580724..580802Clytia hemisphaericaexon
TCONS_00068044-exon-scaffold_478-1510915933:578892..579802TCONS_00068044-exon-scaffold_478-1510915933:578892..579802Clytia hemisphaericaexon
TCONS_00068044-exon-scaffold_478-1491911889:582187..582297TCONS_00068044-exon-scaffold_478-1491911889:582187..582297Clytia hemisphaericaexon
TCONS_00068044-exon-scaffold_478-1491911889:581793..581913TCONS_00068044-exon-scaffold_478-1491911889:581793..581913Clytia hemisphaericaexon
TCONS_00068044-exon-scaffold_478-1491911889:581448..581511TCONS_00068044-exon-scaffold_478-1491911889:581448..581511Clytia hemisphaericaexon
TCONS_00068044-exon-scaffold_478-1491911889:580724..580802TCONS_00068044-exon-scaffold_478-1491911889:580724..580802Clytia hemisphaericaexon
TCONS_00068044-exon-scaffold_478-1491911889:578892..579802TCONS_00068044-exon-scaffold_478-1491911889:578892..579802Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068044-proteinTCONS_00068044-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_478supercontigscaffold_478:578892..582297 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
24.4754	21.94	6.45252	5.03563	14.4819	10.1099	8.51259	9.95182	8.21666	8.28654	12.2816	8.35864	11.3923	12.6045	9.89502	11.1809	13.3783	14.3714	8.68429	8.24469	9.58669	10.2065	22.8885	19.7788	17.7192	17.9603	4.29106	3.66362	11.6268	12.1066
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068044 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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