|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068044 ID=TCONS_00068044|Name=TCONS_00068044|organism=Clytia hemisphaerica|type=transcript|length=1286bp ATAGCTTTCAGGACCGGAGTTGGATCGTGAACGTCCAAAAGATGTCGAAA CGATGTTCGATAAAGTCCGTGATTTTTACATCGATTCCAATACAACCAAT GTTTTACCAGAAGAAGTGAGGAAAAGCATCTGGGCTGTATACAAATTACA TACAAGAGACTGGGACCGAAGTACGTCTCCTGTTTCACCGATCCCCACAT CACCCCGATTCCCGACATACCCCAAAAATAATGTATGGATAAATCCGAAA TTGCTGGAGGAAAGAAATCGAAAACTTAGCTCCGGATCTACAGTTGATTG GAATGATTTTTACATGGGAGACGATTCCGAATTGGCAGGTTTCCATAGCG ACGGTGGACAATATCATGACCAAGGatcaTCAACAGAAGACGAAGCATTA GATGATTATGAGGAATTTCTCCGTCAAACTGGTCAAATTTGAAAAGAGGG CGTCACCACAGACGCCCCTTGAACACCCTATGTGGCCCAGCCATCCACCA ATCAACAAAAAATGGGTGTGTTCAACCACATCGTGAAATTCTTGACCCGC CATCATTACCATGTGGTGACCAAACAACAGAGTATTTTAACTTCATCACT GCAACATGATTGGTTCATTGAAGCAACCTTTTGTTTTAgccttcaaattt tttttggatgtaAAAATCGCCGATTTTATTAGAATTTAATGATAAGAAGC ATGGAATGTGTTTACCGATTTTATCTAAAGATAGTATCTTTTTCGAGTTT TTTGAGGTTTTCCAGTTGCCTGagttttacttaattttgcacTGTTATAC AAGAAATCtgtaaatttctaaattttctgaAAACGAAAATCCTGCTAGTT AGAGCGTAACCTTTCCTATAATAATCTACCCTTACCTGACCTTTTgtgtt cttttttaaaaaagtctGTCAGGTATTAGGTACAGTAAAGGGTTACATTT TATACTTTGCTAACCTCAATATTTCTACCCATGTGGAATACCCACGTTTA TTCAACGTTCATGTAAAgatgttagatggacgttgCTGACGTGACGTTTA GTGTTGACTGGGCAGCTTTCCTTGTCTTTCCACTGcctatttttgttttt ctacagtctttttttcaactttctgcactttttataagattcTATAAgag aaatttatatttatatataaaGTTTATAAAGTTTAAGATTTACATATTTC GTAGACAATAAGGATTGAtttgaaatacaaaaatagGTATATTATAGTAA TCGTTCTGGTAagaaatttgtgtttttattgTCTAC Run BLAST on NCBI protein sequence of TCONS_00068044-protein >TCONS_00068044-protein ID=TCONS_00068044-protein|Name=TCONS_00068044-protein|organism=Clytia hemisphaerica|type=polypeptide|length=129bp
MFDKVRDFYIDSNTTNVLPEEVRKSIWAVYKLHTRDWDRSTSPVSPIPTS PRFPTYPKNNVWINPKLLEERNRKLSSGSTVDWNDFYMGDDSELAGFHSD GGQYHDQGSSTEDEALDDYEEFLRQTGQI Run BLAST on NCBI transcript from alignment at scaffold_478:578892..582297- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068044 ID=TCONS_00068044|Name=TCONS_00068044|organism=Clytia hemisphaerica|type=transcript|length=3406bp|location=Sequence derived from alignment at scaffold_478:578892..582297- (Clytia hemisphaerica) ATAGCTTTCAGGACCGGAGTTGGATCGTGAACGTCCAAAAGATGTCGAAA
CGATGTTCGATAAAGTCCGTGATTTTTACATCGATTCCAATACAACCAAT
GTTTTACCAGAGTAAGCTCTTCCCTTTTAACGTTGTTTGAAATGAGCTGA
TATATTACTTTGGTAAAAAATATTTATTGGCAAAAATCTTTATTGGCAAC
AATTTTCACCGGCTAAAACTTCGTCGGTAAAAATCTTCGTTACCCAACGA
TATTTTTTCGTCACTTGTTTTTAATTAAATTTTACCGACAAAGGAGAAAA
CTTTTTAAATTCATAACCTATATGCTGCTATCTACTATGTACATCTGAAA
TGTCCAAGGTTCAAACTCGTTTCTTTTCATATAGAGAAGTGAGGAAAAGC
ATCTGGGCTGTATACAAATTACATACAAGAGACTGGGACCGAAGTACGTC
TCCTGTTTCACCGATCCCCACATCACCCCGATTCCCGACATACCCCAAAA
ATAATGTAAGTAGATATGCGGTTTATTTTGTTACGCTTGAATTTAAAGTA
AACTTTGCTTTCTAACTAGCCCGGGCTCCACTTAAGTAAGGCTTCTTAAT
AGACCGCATCAAGCAGAGAAGTGTCACAACCTTGCGCACCGTAGCCGAAT
GTTGGACCTTTATGTTGGACCTTAATTATAACTGGACTTGAGGAAGTAAA
TCTTAAAATCAAATATCACCCTATTATATTTACAGAACTTATTCATTACC
TATTAAATAATGGAATTTTGTCTTGAATTTTTTCAGGTATGGATAAATCC
GAAATTGCTGGAGGAAAGAAATCGAAAACTTAGCTCCGGATCTACAGTTG
GTAAGAAAAGTGAATTCTCAATTCCAAAAACAAGTATGGGAAATTAAACC
TCAAAGTGTAAGGAGATGCTAAAACAAAAAGCGTCTGCGCAGTAACGTCA
ATTCTACAAAACATTCGATTTTTGACGTCACTTTAAACTTTCGAGCTCTT
GCAGTAGGAAAAAATTGAAATGCGCCAAAACACTTTGAAAGGTTTCTTTT
TTGAGAAAATATCGAAGTGTAACTCACCAAGAAACGGAATGAAAAAATCC
CAGTGTTTAGTGAGGTACTCGCTTCTACCTAGGTTGAAATCCTCATTATC
TTTTACGTGACTTCATCATCGTTAAGCTCTAGTTTAGACGGCGCCCTTTT
TGCCCTGCCTATTCTAATTGTGAATTAAATTTGGCATAAAGTTGGCTGTC
TAAAGTCAATGCATAGCCCTCTTTTGACGTCAATGCAATGTCTTCTTTCA
ACCTTTTCCAAGCGAAGAAGTGGGCCGTCTAAACTAGAGCTCAGAGACTT
GAATTATGAATGTAACTTACGTACCCTTAAGGGAACATTTTTTTATTATC
AACTAAATCACCATTTAGCTCACTCATATTCTTTCTAATGAATTTGCAAA
CTGTCTTTTCTGTGAACTATTACTTAATACTCGTATTTTTGTCAGATTGG
AATGATTTTTACATGGGAGACGATTCCGAATTGGCAGGTTTCCATAGCGA
CGGTGGACAATATCATGACCAAGGGTACGTTTTTTTTCAAAGTTTCTGTA
CCAAAGTGCTTCTTTTACCATCTAGACGGAGGCCAAAAGTAATTTCTTTT
TAGTAGGTTGAATACACCTCCTTCTCACAGACCTGGTAGGAGTTTTTCAG
TCAATGGGAGTAAAAATAACGGACCTGAACTTGATAGGGATCGATACTCA
CATATTTCAATTCTTTTGTTTTAAAGTCAGAAAAATCAGCGAAGACGGAA
AAAATGGCATAACATTTTGCACTGAGGATTCGTTTATTTGATTATTTTCG
GTGGGGACCAAAATTGTAGGGTAATTTTCCACCGGGGACGATATTTTGGA
CAATTTTTCCAGTGGAAAGAGGTCCCAGTGGGTCTGTGAAAAGGGGGTGT
AACAGTTGCTGAACTAAATTACACTCCTTCTTGGACCTACCTGGGAGTTC
CTCAAAATATATACAATCTATAACTTGTGTTTAGTTGCCAACTGATTTTC
CTTGTGATTGGCGCGTTCAATTTTCTGTTTTTTTTGTACAAAATAAACAA
TCATAAAGCCTTGATGGATGTCAAAGTAAATTCATTCTAATAGGCTGAAC
AATGGACCTTTTCATGAATTATTTTGAGTGCAACGACTGTCTCGTTTTGA
AACCATTACAAAGCCAATTAAATCCCTTGAGTCTTCAAGCGTTACTTTTA
TGGATAGGGTAAACTAGTTACGAACTATGAACTTATGAACTCCCCTGGGA
CTCAATTACCATAGCAATATTTTGAAAGCGAGGTATGTGTTGCTCGTCAT
GTGATATATGGAAAGATCTATTGCTTAGTTATACTTCTCCTATCCATTTT
GGAGCTATTTGGGGAGGTCCTATAAAGTAAATTCGTTCTGTTGCTGAAAC
TAAATAACCTTCTTTCTCCTTCCTATGTTCTTTTTTCATTTTCAGATCAT
CAACAGAAGACGAAGCATTAGATGATTATGAGGAATTTCTCCGTCAAACT
GGTCAAATTTGAAAAGAGGGCGTCACCACAGACGCCCCTTGAACACCCTA
TGTGGCCCAGCCATCCACCAATCAACAAAAAATGGGTGTGTTCAACCACA
TCGTGAAATTCTTGACCCGCCATCATTACCATGTGGTGACCAAACAACAG
AGTATTTTAACTTCATCACTGCAACATGATTGGTTCATTGAAGCAACCTT
TTGTTTTAGCCTTCAAATTTTTTTTGGATGTAAAAATCGCCGATTTTATT
AGAATTTAATGATAAGAAGCATGGAATGTGTTTACCGATTTTATCTAAAG
ATAGTATCTTTTTCGAGTTTTTTGAGGTTTTCCAGTTGCCTGAGTTTTAC
TTAATTTTGCACTGTTATACAAGAAATCTGTAAATTTCTAAATTTTCTGA
AAACGAAAATCCTGCTAGTTAGAGCGTAACCTTTCCTATAATAATCTACC
CTTACCTGACCTTTTGTGTTCTTTTTTAAAAAAGTCTGTCAGGTATTAGG
TACAGTAAAGGGTTACATTTTATACTTTGCTAACCTCAATATTTCTACCC
ATGTGGAATACCCACGTTTATTCAACGTTCATGTAAAGATGTTAGATGGA
CGTTGCTGACGTGACGTTTAGTGTTGACTGGGCAGCTTTCCTTGTCTTTC
CACTGCCTATTTTTGTTTTTCTACAGTCTTTTTTTCAACTTTCTGCACTT
TTTATAAGATTCTATAAGAGAAATTTATATTTATATATAAAGTTTATAAA
GTTTAAGATTTACATATTTCGTAGACAATAAGGATTGATTTGAAATACAA
AAATAGGTATATTATAGTAATCGTTCTGGTAAGAAATTTGTGTTTTTATT
GTCTAC Coding sequence (CDS) from alignment at scaffold_478:578892..582297- >TCONS_00068044 ID=TCONS_00068044|Name=TCONS_00068044|organism=Clytia hemisphaerica|type=CDS|length=1950bp|location=Sequence derived from alignment at scaffold_478:578892..582297- (Clytia hemisphaerica) ATCATCAACAGAAGACGAAGCATTAGATGATTATGAGGAATTTCTCCGTC AAACTGGTCAAATTTGAATTGGAATGATTTTTACATGGGAGACGATTCCG AATTGGCAGGTTTCCATAGCGACGGTGGACAATATCATGACCAAGGGTAT GGATAAATCCGAAATTGCTGGAGGAAAGAAATCGAAAACTTAGCTCCGGA TCTACAGTTGAGAAGTGAGGAAAAGCATCTGGGCTGTATACAAATTACAT ACAAGAGACTGGGACCGAAGTACGTCTCCTGTTTCACCGATCCCCACATC ACCCCGATTCCCGACATACCCCAAAAATAATATGTTCGATAAAGTCCGTG ATTTTTACATCGATTCCAATACAACCAATGTTTTACCAGAATCATCAACA GAAGACGAAGCATTAGATGATTATGAGGAATTTCTCCGTCAAACTGGTCA AATTTGAATTGGAATGATTTTTACATGGGAGACGATTCCGAATTGGCAGG TTTCCATAGCGACGGTGGACAATATCATGACCAAGGGTATGGATAAATCC GAAATTGCTGGAGGAAAGAAATCGAAAACTTAGCTCCGGATCTACAGTTG AGAAGTGAGGAAAAGCATCTGGGCTGTATACAAATTACATACAAGAGACT GGGACCGAAGTACGTCTCCTGTTTCACCGATCCCCACATCACCCCGATTC CCGACATACCCCAAAAATAATATGTTCGATAAAGTCCGTGATTTTTACAT CGATTCCAATACAACCAATGTTTTACCAGAATCATCAACAGAAGACGAAG CATTAGATGATTATGAGGAATTTCTCCGTCAAACTGGTCAAATTTGAATT GGAATGATTTTTACATGGGAGACGATTCCGAATTGGCAGGTTTCCATAGC GACGGTGGACAATATCATGACCAAGGGTATGGATAAATCCGAAATTGCTG GAGGAAAGAAATCGAAAACTTAGCTCCGGATCTACAGTTGAGAAGTGAGG AAAAGCATCTGGGCTGTATACAAATTACATACAAGAGACTGGGACCGAAG TACGTCTCCTGTTTCACCGATCCCCACATCACCCCGATTCCCGACATACC CCAAAAATAATATGTTCGATAAAGTCCGTGATTTTTACATCGATTCCAAT ACAACCAATGTTTTACCAGAATCATCAACAGAAGACGAAGCATTAGATGA TTATGAGGAATTTCTCCGTCAAACTGGTCAAATTTGAATTGGAATGATTT TTACATGGGAGACGATTCCGAATTGGCAGGTTTCCATAGCGACGGTGGAC AATATCATGACCAAGGGTATGGATAAATCCGAAATTGCTGGAGGAAAGAA ATCGAAAACTTAGCTCCGGATCTACAGTTGAGAAGTGAGGAAAAGCATCT GGGCTGTATACAAATTACATACAAGAGACTGGGACCGAAGTACGTCTCCT GTTTCACCGATCCCCACATCACCCCGATTCCCGACATACCCCAAAAATAA TATGTTCGATAAAGTCCGTGATTTTTACATCGATTCCAATACAACCAATG TTTTACCAGAATCATCAACAGAAGACGAAGCATTAGATGATTATGAGGAA TTTCTCCGTCAAACTGGTCAAATTTGAATTGGAATGATTTTTACATGGGA GACGATTCCGAATTGGCAGGTTTCCATAGCGACGGTGGACAATATCATGA CCAAGGGTATGGATAAATCCGAAATTGCTGGAGGAAAGAAATCGAAAACT TAGCTCCGGATCTACAGTTGAGAAGTGAGGAAAAGCATCTGGGCTGTATA CAAATTACATACAAGAGACTGGGACCGAAGTACGTCTCCTGTTTCACCGA TCCCCACATCACCCCGATTCCCGACATACCCCAAAAATAATATGTTCGAT AAAGTCCGTGATTTTTACATCGATTCCAATACAACCAATGTTTTACCAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00068044-exon-scaffold_478-1575043694:582187..582297 | TCONS_00068044-exon-scaffold_478-1575043694:582187..582297 | Clytia hemisphaerica | exon |
TCONS_00068044-exon-scaffold_478-1575043694:581793..581913 | TCONS_00068044-exon-scaffold_478-1575043694:581793..581913 | Clytia hemisphaerica | exon |
TCONS_00068044-exon-scaffold_478-1575043694:581448..581511 | TCONS_00068044-exon-scaffold_478-1575043694:581448..581511 | Clytia hemisphaerica | exon |
TCONS_00068044-exon-scaffold_478-1575043694:580724..580802 | TCONS_00068044-exon-scaffold_478-1575043694:580724..580802 | Clytia hemisphaerica | exon |
TCONS_00068044-exon-scaffold_478-1575043694:578892..579802 | TCONS_00068044-exon-scaffold_478-1575043694:578892..579802 | Clytia hemisphaerica | exon |
TCONS_00068044-exon-scaffold_478-1510915933:582187..582297 | TCONS_00068044-exon-scaffold_478-1510915933:582187..582297 | Clytia hemisphaerica | exon |
TCONS_00068044-exon-scaffold_478-1510915933:581793..581913 | TCONS_00068044-exon-scaffold_478-1510915933:581793..581913 | Clytia hemisphaerica | exon |
TCONS_00068044-exon-scaffold_478-1510915933:581448..581511 | TCONS_00068044-exon-scaffold_478-1510915933:581448..581511 | Clytia hemisphaerica | exon |
TCONS_00068044-exon-scaffold_478-1510915933:580724..580802 | TCONS_00068044-exon-scaffold_478-1510915933:580724..580802 | Clytia hemisphaerica | exon |
TCONS_00068044-exon-scaffold_478-1510915933:578892..579802 | TCONS_00068044-exon-scaffold_478-1510915933:578892..579802 | Clytia hemisphaerica | exon |
TCONS_00068044-exon-scaffold_478-1491911889:582187..582297 | TCONS_00068044-exon-scaffold_478-1491911889:582187..582297 | Clytia hemisphaerica | exon |
TCONS_00068044-exon-scaffold_478-1491911889:581793..581913 | TCONS_00068044-exon-scaffold_478-1491911889:581793..581913 | Clytia hemisphaerica | exon |
TCONS_00068044-exon-scaffold_478-1491911889:581448..581511 | TCONS_00068044-exon-scaffold_478-1491911889:581448..581511 | Clytia hemisphaerica | exon |
TCONS_00068044-exon-scaffold_478-1491911889:580724..580802 | TCONS_00068044-exon-scaffold_478-1491911889:580724..580802 | Clytia hemisphaerica | exon |
TCONS_00068044-exon-scaffold_478-1491911889:578892..579802 | TCONS_00068044-exon-scaffold_478-1491911889:578892..579802 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_478 | supercontig | scaffold_478:578892..582297 - |
Blast
The following BLAST results are available for this feature:
|