|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067804 ID=TCONS_00067804|Name=TCONS_00067804|organism=Clytia hemisphaerica|type=transcript|length=2941bp
GTTTATAATCTTCTCCtcttcttttttgtcttttcttttaGTTGTGCTGA
ATTCTAGCTTCGAATCTCTCGCACTAACTAAAAGCTCTCTCATTTCACTC
TAAAGTTAAGACTGGGGTCAGTTAAAAATCGAGCTAGCCTATGTCCTGCT
GTGTCTCATAAAAAGGTTGAAACTTTTGGCAGTTAGAGAGACAGTGCTGT
GTCTCAAAATGGTAGCCAGAGCCTGTAGATAATGATTAATTTCAATATCA
ATCTTTGTTCATAGGAAATATGGATTACACAGAAGATCACATCAAAATCT
TTTCTTCACGTGAATTGTCAACTGGTGaaatgaagtatgatttcaaAAAC
CTTCTCATCCAACCTGAATACCATTTACTTGATTTCGAAGAGAAATTCAA
TGGAAGTTTGAATGAATTTTGGGGACAGTGTGACGATGAGAAAATCAACG
AAGGTGAGCGTGAACACACTGAATCATTTTACGGTGGCATGTATTGGGAT
CCCTATAGATGTGATATGAGAGAACGAAAGCATTATCAAACTTACCGAGA
AAAATACACCAAACGGGtgagaaaatattcaaagtATCTATTGTTTGCTT
TCCCAAAATCTCAAAAAGCTCACATCCTTTCGAAATGTGGAATCAAAGAA
TCATTTAAGTTCCTCGTTGAAGAGTATGAAGCTGGCTCCTCAATGTTCAA
AGAATATTCCAACACCTTTCTAGAGGAAGTTCCCATTGAGGAATTTTTCG
AAAGTTGTGAAACGTTGGAGGAGGTAATTGATGAAAGATTGAATGTTACC
ATGGTTATGCAGTTTCTTTTGAAAGTCGGCGACGTTGAGTTAACAAAATC
TTTTATCGATAAGGTTATGGGAGCTGAAAAATATTCAGGTAAATATTACG
GcatcgaagaagaagaaatgataaaacctttaattaatTTGTTGAAGGCT
TTTCCATGGCAACCCCTTAGTGAGTCGGTTGAGACAGTTATTAGTCATTG
TCCAAAAGAACAGTATGAATTTTGGCTAGATGTGTTTTCATCTACCGGTA
TCACTGAGATTGCACATAAAGTTCTTGCGATCAGTTTGCAGAAAATGATG
GATGATAAAAGATTCCTTCCGTTATGgttgaaaatattcaagcttgtttt
tgaaaacgaagAATTTGGTAATCGTTGGTGGGATAAGATCATCTCCTGTG
AAGATCTTGTCAACAAAGAATTCGATATCATTTCTCATATTTGTTTGAAT
CTACCCATTGAAACAAACCCAGTAAAGTTTCCTTCTCTTTTAACCGCTTT
GGTGACTTCAATGACAACCGAGGACAACCCATATTGTGTTAAGAGGTATG
CGGAAAAGTTACTTGATGTTATCGCCAAAATCAAAGGGAGTGAATTTTTC
GAAAGTGCTCTCACTAATTTAAGTAATCAGCTTGTTTCTGAAGGTCGTAT
CTCAACCTTGATAAAACTAGCAGAACTCTGTGCACCGAAAGATCAACATT
CTCGCCACAATGAAGAAGTTGTTAAACTATTTCTGGAAGGGTGTTTTGAT
TGGTTATCAAAAGCAACTTTCGAAAGGAAACATATACAAAGTGTTGTCGA
TATAGTTGTCCTTTTGAACCAGCACAAACAATTGTATAATGGTCCTATGA
TTGAGAAATACATAGAGTCGTGTCAGAAAATATCCGATCCTGATTTTATT
TGTAATGTTGTCAACAAGTTATTTACCATGTCATGTTCGTTTTACTTTCT
CAAGCCGTTACTTCAATCACTTGCCAATTTGTTAAGCACCAAAACATTCA
CCGATCACAAAGCAATGTCTTCAACTATCAACCACATGTTCATCCAAGGA
CCTGAGTTTGATCATCTATTGACTCTTCTGTTGACTAACGAAAAAATTCT
CTCTTCCATTGATCTTCTCAATGAAATTCTACATTCACTTCTCAGCAAGG
ACGACAACATCGAACAATTGAAAACCAGTATCAATTTCCATGGATTGTTG
ACCAGCTTCGTCTCTCTAATGCAACAACCGAATAACACAAACAAAGAATT
TTCATCTCTCCGTCTGGTTCATGAATTTCTACTCAGCTTAAGCGACGAAT
CTCCTTTACATCAACTGGTTCCTCAAATAATTGACACAAGTTTGCTGAAA
AACGATTTCCCTAAGTGTATACAATATCTATCCAAACTTTCCATCCGTGA
AACTGAGACATTCAAAACCTTCCTCACAACGACAATTCATGCTTTGGGAA
TCTTCCTCCGCCGATATAATACAATCATCGATGCTGAATACCAACTTATT
TATGACTTCATAAAACTATTGCTTAAGAACGACCACTTCACGCCCTTTGC
TTTACAGCTTGCTTCGTTGAAAGACCTTACCAACAACGATTATAGAAACT
TATATCATAACAATAAAGAAAGGTCCGTTCTGGAAAATCTTCTGGCTGCT
TTCAAAAATCACCGCAACACCGATTTCTTTGCCGCCCTCCAGCTCTCTCG
CTCAAGGAGTTTGCAAATCTTGAAAGATTATGGTCCCCCTAAATTCACCT
GGGAGCAACCTGATGCGAATATCGATCACGCCAAAGTTCAGGAGTTTCTC
CGAAGTAAACGCGAAACAATCATATTGCGAACTTTCCGATCCTATAAAAG
CGCTAATAACCGGATCAAAAAGCATAGTGGATATAACAAAGACGGGAAAT
ACAGTTTTACCGCCCAAATTCGTACCGCCAAAAACGGGTGGAAGAGTTTA
GTGGATGTTAAGAAAGGGCGTCACATTCACGAAGATAGAGAGGAAAGATT
TCAGAATCTTATAAATGAATTGGAAGAAAttcttgaaagtttgaaaatat
caaACGTTGAAAATCCATTAGCTGCGTAATTTGAATCAATTTCTTTAGGG
TTATCTTCATATTCATTTAATCTTTATACTAATAAAACTAG Run BLAST on NCBI transcript from alignment at scaffold_476:188242..191182+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067804 ID=TCONS_00067804|Name=TCONS_00067804|organism=Clytia hemisphaerica|type=transcript|length=2941bp|location=Sequence derived from alignment at scaffold_476:188242..191182+ (Clytia hemisphaerica)
GTTTATAATCTTCTCCtcttcttttttgtcttttcttttaGTTGTGCTGA
ATTCTAGCTTCGAATCTCTCGCACTAACTAAAAGCTCTCTCATTTCACTC
TAAAGTTAAGACTGGGGTCAGTTAAAAATCGAGCTAGCCTATGTCCTGCT
GTGTCTCATAAAAAGGTTGAAACTTTTGGCAGTTAGAGAGACAGTGCTGT
GTCTCAAAATGGTAGCCAGAGCCTGTAGATAATGATTAATTTCAATATCA
ATCTTTGTTCATAGGAAATATGGATTACACAGAAGATCACATCAAAATCT
TTTCTTCACGTGAATTGTCAACTGGTGaaatgaagtatgatttcaaAAAC
CTTCTCATCCAACCTGAATACCATTTACTTGATTTCGAAGAGAAATTCAA
TGGAAGTTTGAATGAATTTTGGGGACAGTGTGACGATGAGAAAATCAACG
AAGGTGAGCGTGAACACACTGAATCATTTTACGGTGGCATGTATTGGGAT
CCCTATAGATGTGATATGAGAGAACGAAAGCATTATCAAACTTACCGAGA
AAAATACACCAAACGGGtgagaaaatattcaaagtATCTATTGTTTGCTT
TCCCAAAATCTCAAAAAGCTCACATCCTTTCGAAATGTGGAATCAAAGAA
TCATTTAAGTTCCTCGTTGAAGAGTATGAAGCTGGCTCCTCAATGTTCAA
AGAATATTCCAACACCTTTCTAGAGGAAGTTCCCATTGAGGAATTTTTCG
AAAGTTGTGAAACGTTGGAGGAGGTAATTGATGAAAGATTGAATGTTACC
ATGGTTATGCAGTTTCTTTTGAAAGTCGGCGACGTTGAGTTAACAAAATC
TTTTATCGATAAGGTTATGGGAGCTGAAAAATATTCAGGTAAATATTACG
GcatcgaagaagaagaaatgataaaacctttaattaatTTGTTGAAGGCT
TTTCCATGGCAACCCCTTAGTGAGTCGGTTGAGACAGTTATTAGTCATTG
TCCAAAAGAACAGTATGAATTTTGGCTAGATGTGTTTTCATCTACCGGTA
TCACTGAGATTGCACATAAAGTTCTTGCGATCAGTTTGCAGAAAATGATG
GATGATAAAAGATTCCTTCCGTTATGgttgaaaatattcaagcttgtttt
tgaaaacgaagAATTTGGTAATCGTTGGTGGGATAAGATCATCTCCTGTG
AAGATCTTGTCAACAAAGAATTCGATATCATTTCTCATATTTGTTTGAAT
CTACCCATTGAAACAAACCCAGTAAAGTTTCCTTCTCTTTTAACCGCTTT
GGTGACTTCAATGACAACCGAGGACAACCCATATTGTGTTAAGAGGTATG
CGGAAAAGTTACTTGATGTTATCGCCAAAATCAAAGGGAGTGAATTTTTC
GAAAGTGCTCTCACTAATTTAAGTAATCAGCTTGTTTCTGAAGGTCGTAT
CTCAACCTTGATAAAACTAGCAGAACTCTGTGCACCGAAAGATCAACATT
CTCGCCACAATGAAGAAGTTGTTAAACTATTTCTGGAAGGGTGTTTTGAT
TGGTTATCAAAAGCAACTTTCGAAAGGAAACATATACAAAGTGTTGTCGA
TATAGTTGTCCTTTTGAACCAGCACAAACAATTGTATAATGGTCCTATGA
TTGAGAAATACATAGAGTCGTGTCAGAAAATATCCGATCCTGATTTTATT
TGTAATGTTGTCAACAAGTTATTTACCATGTCATGTTCGTTTTACTTTCT
CAAGCCGTTACTTCAATCACTTGCCAATTTGTTAAGCACCAAAACATTCA
CCGATCACAAAGCAATGTCTTCAACTATCAACCACATGTTCATCCAAGGA
CCTGAGTTTGATCATCTATTGACTCTTCTGTTGACTAACGAAAAAATTCT
CTCTTCCATTGATCTTCTCAATGAAATTCTACATTCACTTCTCAGCAAGG
ACGACAACATCGAACAATTGAAAACCAGTATCAATTTCCATGGATTGTTG
ACCAGCTTCGTCTCTCTAATGCAACAACCGAATAACACAAACAAAGAATT
TTCATCTCTCCGTCTGGTTCATGAATTTCTACTCAGCTTAAGCGACGAAT
CTCCTTTACATCAACTGGTTCCTCAAATAATTGACACAAGTTTGCTGAAA
AACGATTTCCCTAAGTGTATACAATATCTATCCAAACTTTCCATCCGTGA
AACTGAGACATTCAAAACCTTCCTCACAACGACAATTCATGCTTTGGGAA
TCTTCCTCCGCCGATATAATACAATCATCGATGCTGAATACCAACTTATT
TATGACTTCATAAAACTATTGCTTAAGAACGACCACTTCACGCCCTTTGC
TTTACAGCTTGCTTCGTTGAAAGACCTTACCAACAACGATTATAGAAACT
TATATCATAACAATAAAGAAAGGTCCGTTCTGGAAAATCTTCTGGCTGCT
TTCAAAAATCACCGCAACACCGATTTCTTTGCCGCCCTCCAGCTCTCTCG
CTCAAGGAGTTTGCAAATCTTGAAAGATTATGGTCCCCCTAAATTCACCT
GGGAGCAACCTGATGCGAATATCGATCACGCCAAAGTTCAGGAGTTTCTC
CGAAGTAAACGCGAAACAATCATATTGCGAACTTTCCGATCCTATAAAAG
CGCTAATAACCGGATCAAAAAGCATAGTGGATATAACAAAGACGGGAAAT
ACAGTTTTACCGCCCAAATTCGTACCGCCAAAAACGGGTGGAAGAGTTTA
GTGGATGTTAAGAAAGGGCGTCACATTCACGAAGATAGAGAGGAAAGATT
TCAGAATCTTATAAATGAATTGGAAGAAAttcttgaaagtttgaaaatat
caaACGTTGAAAATCCATTAGCTGCGTAATTTGAATCAATTTCTTTAGGG
TTATCTTCATATTCATTTAATCTTTATACTAATAAAACTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067804-exon-scaffold_476-1491911889:188242..191182 | TCONS_00067804-exon-scaffold_476-1491911889:188242..191182 | Clytia hemisphaerica | exon |
| TCONS_00067804-exon-scaffold_476-1510915933:188242..191182 | TCONS_00067804-exon-scaffold_476-1510915933:188242..191182 | Clytia hemisphaerica | exon |
| TCONS_00067804-exon-scaffold_476-1575043694:188242..191182 | TCONS_00067804-exon-scaffold_476-1575043694:188242..191182 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_476 | supercontig | scaffold_476:188242..191182 + |
Blast
The following BLAST results are available for this feature:
|
