XLOC_042346 (gene) - C. hemisphaerica

Overview
NameXLOC_042346
Unique NameXLOC_042346
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_476:184492..191182+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_042346 ID=XLOC_042346|Name=XLOC_042346|organism=Clytia hemisphaerica|type=gene|length=6691bp|location=Sequence derived from alignment at scaffold_476:184492..191182+ (Clytia hemisphaerica)
AGAAATTCTTGGACACTTCAACCAAACCAATTTACattacaaaattcaaa ataccATGAAGTTCTGGATGATGTCTTGTCTAAAGTTGCAGAAGAATTAG ACTACAAACTCGAAAATGTCCAGGCTAAAATCAACAAACTTGNGATTTCT CTCATCAGAAATTCTTGGACACTTCAACCAAACCAATTTACattacaaaa ttcaaaataccATGAAGTTCTGGATGATGTCTTGTCTAAAGTTGCAGAAG AATTAGACTACAAACTCGAAAATGTTCAGGTTAAAATCAACAAACTTATG CTGTATCAAGAGAGTGATGATAACGATGATAATGATGATgggtttgtttt tgaaaataacaacgAGACAGATAAAACATGCTTTGCCACACTTCTGATGC AACTGCCATCTGTCTTCAAAGGTCATAAAGTTATTGTGTATTCTAAGGGA AAGCTCCAAAGAATATTGATATCAGtgaatcaaaatatgaaataatttAC ACAGCTTTCTTCAACAGTTGTCAAAGAAAGATGACATCATTAAAAGAAGG GTATCGAATTGTTTTGATGTATGATTTGTTATGGATTGGTGATTGTCAAC CTCCCAATGACCAAATGTTTCAGCAAAGTATCCAGAAGGCCTCCCTTCTT CTTGAAAAGGTACAGTAGCTTAAATGTTACAGCTTTAAAACACNAATGAT GATgggtttgtttttgaaaataacaacgAGACAGATAAAACATGCTTTGC CACACTTCTGATGCAACTGCCATCTGTCTTCAAAGGCCATGAAATTATAG TGTATTCTGAAGGGAAAGCTCCAAAGAAGATACAATTTGATATCAGggaa tcaaaatatgaaataatttATACAGCTTTCTTCAACAGTTGTCAAAGAAA GATGGCATCATTAAAAGAAGGGTATCGAATGGTTTTGGTGTATGATTTGT TATGGATTGGTGATTGTCCACCTCCCAATGACCAAATATTTCAGCAAAGT ATTAAGAAGGCCTCCTTTCTTCTTGAAAAGGTACGGAAAATGCCTGACCA TTTGACCTTTTTCTCACTCGggttttttataagtttgtcGCTACTGATAC AAAGAAAGTTGTGTGTCCGTTCATTTGCTTtgctaaaaaattgaaacaaa tcgATTGTAAAGATTTAAGTGCTTGAGTCCTGTTATGGAGGGTGTTTGAG CTAGAATATGtatttctcaacttcagttgagttagaaNgattttttcact gttccgcgtcgcacccaagactcgttttttcactgttccgcgtcgcaccc aagactcgtttgttcactgttccgcgtcgcacccaagactagtttgttca ctgttccgcgtcgcacccaagactcgtttgttaactgttccgcgtcgcac ccaagaccgattttttcactgttccgcgtcgcacccaagactgatttttt cactgttccgcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtt ttttatttttcaaaaattttgatttttggggcctggggacgagttttcgc caaaacgaggctaaaactttggggcagcctggagacttcaaagattgttc gatttggctgaaattttgcacacttgttccttgggtgaatatctgggggt gtttttttcattttttttNTGTTCCGCGTCatacccaagaccgatttttt cactgttccgcgtcgcacccaagactgttttattcactgttccgcgtcgc acccaagactggtTTTTTCACTATTCcgcttcgcacccaagactgatttt ttcactgttccgcgtcgcacccaagactgatttttttacTGTTCCACGTC GTActcaagactcgtttgttcactgttccacgtcgcacccaagacttgtt tgttcactgttccgcgttgcacccaagaccaattttttcactgttccgcg tcgcacccaagactgattttttcactgttccgcgtcgcacccaagactcg ttttttcactgttccNaaaacgaggctaaaactttggggcagcctggaga cttcaaaaattgttcgatttggctgaaattttgcacacttgttccttggg tgaatatctgggtgtggttttttgcatttttcagaaattttgttttttgg ggcatggggacgagttttttgccaaaacgaggctaaaactttggagcagc ctacaggcctccaaattggtcggatttggttgaaatttggcacatttgtt cattgggtgaatatctgggtgtggttttttgcatttttcagaaatttttt tttccggtggaaaaatgcctgaaatatgccggaaaaactggttttttggc attttctcgagattttatcattagttttttctgattttttactcAAAGAT GCGTGTTAACAATGCcctaaacatggccgagtccgatttttcagaaattt ttttttccggtggaaaaatgcctgaaatatgccggaaatcgccttTTTTC GNggtgaatatctgggggtctacaattgggcctatgaataatttgaagcc actgaagttgagcccagtgcgttgcgcacgttcgactattttgttttttt cttcattagatTGATGAGGGTATTTTGTGGACGCTTGATGGAAAGTATGA TAATGTATCACTTTCTGAACAACTTGCTCAAAATTATGGTGAAGATGTTT TGAATGGCAAAGATCATCAAGTAATTTCTTGTTTGGCAAGAGCTAACGAG TTACTGAGTACGTAGTATATCAATGTCATGATAGTGTAAAGGTCTTGTTA GACGATAACATTCGGtaacatttttgtgtaacattttctaaaaatagcaa atgtTGTACAAAGTGTTACCGTGTAACATCGATTAACATTCAGAAACATT CAAATGTTAACGAATGNATGTTGTACAAAATGTTACCGTGTAACATCGAT TAACATTCAGAAACATTCAAATGTTAACGAATGTTACGCGCAGAtagcaa atcaaaaaaaaatgatttgctCTACATGGTTAACATTTTGAATCAAAGGA TGCCGCcatttaaagggaatttaaaaggATACTTCAAGTGCGCACGTGTT TTTTCGccgatttttctctctttttctctcNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNTACGCACAAAATGTTTGCGTGTA ACATATGTTAACATTTCTTGagcacatttttgaaatcttctatttttaga aatgttagcaaatgttacacaaaaatgttaCTGTCTAACAAGACCTTAAG CtcttcttttgaaaattatgcTTCTAGTAATATCATTATGTATCAAgttt gtttgatttgattttgaaataagctGTGCTTTAAGCAAGAAAAATCTAAT TGAATCTGAAGCAGGATGATATCGACAAACAAATTTACATCAAATccttt tttatcaatttcaaattcagtCGATGAGAAGAAGTACGAGTTTCATTTGC TGGAAATTCAACGAGCTTTGGATGAAGAAGGGAGCTTCCGTGGAGAAGGA GAAAGCAGAACTTTCAGAGGTTCGTAATCCGAAGGCTTCCACCTTCTCCG TTTTTTCGTTGTATATTTTCTAAAGTCAAATGCTATATTTTTTACTCGAT GATTAATATTATTGCATTTCTCCTAGCTATTGGCTTTATCTTCTAATGGT GTTTATAATCTTCTCCtcttcttttttgtcttttcttttaGTTGTGCTGA ATTCTAGCTTCGAATCTCTCGCACTAACTAAAAGCTCTCTCATTTCACTC TAAAGTTAAGACTGGGGTCAGTTAAAAATCGAGCTAGCCTATGTCCTGCT GTGTCTCATAAAAAGGTTGAAACTTTTGGCAGTTAGAGAGACAGTGCTGT GTCTCAAAATGGTAGCCAGAGCCTGTAGATAATGATTAATTTCAATATCA ATCTTTGTTCATAGGAAATATGGATTACACAGAAGATCACATCAAAATCT TTTCTTCACGTGAATTGTCAACTGGTGaaatgaagtatgatttcaaAAAC CTTCTCATCCAACCTGAATACCATTTACTTGATTTCGAAGAGAAATTCAA TGGAAGTTTGAATGAATTTTGGGGACAGTGTGACGATGAGAAAATCAACG AAGGTGAGCGTGAACACACTGAATCATTTTACGGTGGCATGTATTGGGAT CCCTATAGATGTGATATGAGAGAACGAAAGCATTATCAAACTTACCGAGA AAAATACACCAAACGGGtgagaaaatattcaaagtATCTATTGTTTGCTT TCCCAAAATCTCAAAAAGCTCACATCCTTTCGAAATGTGGAATCAAAGAA TCATTTAAGTTCCTCGTTGAAGAGTATGAAGCTGGCTCCTCAATGTTCAA AGAATATTCCAACACCTTTCTAGAGGAAGTTCCCATTGAGGAATTTTTCG AAAGTTGTGAAACGTTGGAGGAGGTAATTGATGAAAGATTGAATGTTACC ATGGTTATGCAGTTTCTTTTGAAAGTCGGCGACGTTGAGTTAACAAAATC TTTTATCGATAAGGTTATGGGAGCTGAAAAATATTCAGGTAAATATTACG GcatcgaagaagaagaaatgataaaacctttaattaatTTGTTGAAGGCT TTTCCATGGCAACCCCTTAGTGAGTCGGTTGAGACAGTTATTAGTCATTG TCCAAAAGAACAGTATGAATTTTGGCTAGATGTGTTTTCATCTACCGGTA TCACTGAGATTGCACATAAAGTTCTTGCGATCAGTTTGCAGAAAATGATG GATGATAAAAGATTCCTTCCGTTATGgttgaaaatattcaagcttgtttt tgaaaacgaagAATTTGGTAATCGTTGGTGGGATAAGATCATCTCCTGTG AAGATCTTGTCAACAAAGAATTCGATATCATTTCTCATATTTGTTTGAAT CTACCCATTGAAACAAACCCAGTAAAGTTTCCTTCTCTTTTAACCGCTTT GGTGACTTCAATGACAACCGAGGACAACCCATATTGTGTTAAGAGGTATG CGGAAAAGTTACTTGATGTTATCGCCAAAATCAAAGGGAGTGAATTTTTC GAAAGTGCTCTCACTAATTTAAGTAATCAGCTTGTTTCTGAAGGTCGTAT CTCAACCTTGATAAAACTAGCAGAACTCTGTGCACCGAAAGATCAACATT CTCGCCACAATGAAGAAGTTGTTAAACTATTTCTGGAAGGGTGTTTTGAT TGGTTATCAAAAGCAACTTTCGAAAGGAAACATATACAAAGTGTTGTCGA TATAGTTGTCCTTTTGAACCAGCACAAACAATTGTATAATGGTCCTATGA TTGAGAAATACATAGAGTCGTGTCAGAAAATATCCGATCCTGATTTTATT TGTAATGTTGTCAACAAGTTATTTACCATGTCATGTTCGTTTTACTTTCT CAAGCCGTTACTTCAATCACTTGCCAATTTGTTAAGCACCAAAACATTCA CCGATCACAAAGCAATGTCTTCAACTATCAACCACATGTTCATCCAAGGA CCTGAGTTTGATCATCTATTGACTCTTCTGTTGACTAACGAAAAAATTCT CTCTTCCATTGATCTTCTCAATGAAATTCTACATTCACTTCTCAGCAAGG ACGACAACATCGAACAATTGAAAACCAGTATCAATTTCCATGGATTGTTG ACCAGCTTCGTCTCTCTAATGCAACAACCGAATAACACAAACAAAGAATT TTCATCTCTCCGTCTGGTTCATGAATTTCTACTCAGCTTAAGCGACGAAT CTCCTTTACATCAACTGGTTCCTCAAATAATTGACACAAGTTTGCTGAAA AACGATTTCCCTAAGTGTATACAATATCTATCCAAACTTTCCATCCGTGA AACTGAGACATTCAAAACCTTCCTCACAACGACAATTCATGCTTTGGGAA TCTTCCTCCGCCGATATAATACAATCATCGATGCTGAATACCAACTTATT TATGACTTCATAAAACTATTGCTTAAGAACGACCACTTCACGCCCTTTGC TTTACAGCTTGCTTCGTTGAAAGACCTTACCAACAACGATTATAGAAACT TATATCATAACAATAAAGAAAGGTCCGTTCTGGAAAATCTTCTGGCTGCT TTCAAAAATCACCGCAACACCGATTTCTTTGCCGCCCTCCAGCTCTCTCG CTCAAGGAGTTTGCAAATCTTGAAAGATTATGGTCCCCCTAAATTCACCT GGGAGCAACCTGATGCGAATATCGATCACGCCAAAGTTCAGGAGTTTCTC CGAAGTAAACGCGAAACAATCATATTGCGAACTTTCCGATCCTATAAAAG CGCTAATAACCGGATCAAAAAGCATAGTGGATATAACAAAGACGGGAAAT ACAGTTTTACCGCCCAAATTCGTACCGCCAAAAACGGGTGGAAGAGTTTA GTGGATGTTAAGAAAGGGCGTCACATTCACGAAGATAGAGAGGAAAGATT TCAGAATCTTATAAATGAATTGGAAGAAAttcttgaaagtttgaaaatat caaACGTTGAAAATCCATTAGCTGCGTAATTTGAATCAATTTCTTTAGGG TTATCTTCATATTCATTTAATCTTTATACTAATAAAACTAG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00067800TCONS_00067800Clytia hemisphaericatranscript
TCONS_00067801TCONS_00067801Clytia hemisphaericatranscript
TCONS_00067802TCONS_00067802Clytia hemisphaericatranscript
TCONS_00067803TCONS_00067803Clytia hemisphaericatranscript
TCONS_00067804TCONS_00067804Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00067803-proteinTCONS_00067803-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_476supercontigscaffold_476:184492..191182 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
34.34 30.46 15.39 12.96 5.29 3.23 6.09 6.15 3.28 4.58 2.38 2.36 2.36 1.48 3.27 2.83 2.88 3.41 1.67 1.66 3.54 2.9 12.27 12.94 1.25 2 3.26 2.25 10.36 11.01