TCONS_00067801 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067801
Unique NameTCONS_00067801
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1649

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067801 ID=TCONS_00067801|Name=TCONS_00067801|organism=Clytia hemisphaerica|type=transcript|length=1649bp
AGAAATTCTTGGACACTTCAACCAAACCAATTTACattacaaaattcaaa
ataccATGAAGTTCTGGATGATGTCTTGTCTAAAGTTGCAGAAGAATTAG
ACTACAAACTCGAAAATGTCCAGGTTAAAATCAACAAACTTATGCTGTAT
CAAGAGAGTGATGATAACGATGATAATGATGATgggtttgtttttgaaaa
taacaacgAGACAGATAAAACATGCTTTGCCACACTTCTGATGCAACTGC
CATCTGTCTTCAAAGGTCATAAAGTTATTGTGTATTCTAAGGGAAAGCTC
CAAAGAATATTGATATCAGtgaatcaaaatatgaaataatttACACAGCT
TTCTTCAACAGTTGTCAAAGAAAGATGACATCATTAAAAGAAGGGTATCG
AATTGTTTTGATGTATGATTTGTTATGGATTGGTGATTGTCAACCTCCCA
ATGACCAAATGTTTCAGCAAAGTATCCAGAAGGCCTCCCTTCTTCTTGAA
AAGatTGATGAGGGTATTTTGTGGACGCTTGATGGAAAGTATGATAATGT
ATCACTTTCTGAACAACTTGCTCAAAATTATGGTGAAGATGTTTTGAATG
GCAAAGATCATCAAGTAATTTCTTGTTTGGCAAGAGCTAACGAGTTACTG
AGTACGTAGTATATCAATGTCATGATAGTtCGATGAGAAGAAGTACGAGT
TTCATTTGCTGGAAATTCAACGAGCTTTGGATGAAGAAGGGAGCTTCCGT
GGAGAAGGAGAAAGCAGAACTTTCAGAGGAAATATGGATTACACAGAAGA
TCACATCAAAATCTTTTCTTCACGTGAATTGTCAACTGGTGaaatgaagt
atgatttcaaAAACCTTCTCATCCAACCTGAATACCATTTACTTGATTTC
GAAGAGAAATTCAATGGAAGTTTGAATGAATTTTGGGGACAGTGTGACGA
TGAGAAAATCAACGAAGGTGAGCGTGAACACACTGAATCATTTTACGGTG
GCATGTATTGGGATCCCTATAGATGTGATATGAGAGAACGAAAGCATTAT
CAAACTTACCGAGAAAAATACACCAAACGGCTTGCTTCGTTGAAAGACCT
TACCAACAACGATTATAGAAACTTATATCATAACAATAAAGAAAGGTCCG
TTCTGGAAAATCTTCTGGCTGCTTTCAAAAATCACCGCAACACCGATTTC
TTTGCCGCCCTCCAGCTCTCTCGCTCAAGGAGTTTGCAAATCTTGAAAGA
TTATGGTCCCCCTAAATTCACCTGGGAGCAACCTGATGCGAATATCGATC
ACGCCAAAGTTCAGGAGTTTCTCCGAAGTAAACGCGAAACAATCATATTG
CGAACTTTCCGATCCTATAAAAGCGCTAATAACCGGATCAAAAAGCATAG
TGGATATAACAAAGACGGGAAATACAGTTTTACCGCCCAAATTCGTACCG
CCAAAAACGGGTGGAAGAGTTTAGTGGATGTTAAGAAAGGGCGTCACATT
CACGAAGATAGAGAGGAAAGATTTCAGAATCTTATAAATGAATTGGAAGA
AAttcttgaaagtttgaaaatatcaaACGTTGAAAATCCATTAGCTGCGT
AATTTGAATCAATTTCTTTAGGGTTATCTTCATATTCATTTAATCTTTA
Run BLAST on NCBI

transcript from alignment at scaffold_476:184492..191167+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067801 ID=TCONS_00067801|Name=TCONS_00067801|organism=Clytia hemisphaerica|type=transcript|length=6676bp|location=Sequence derived from alignment at scaffold_476:184492..191167+ (Clytia hemisphaerica)
AGAAATTCTTGGACACTTCAACCAAACCAATTTACattacaaaattcaaa
ataccATGAAGTTCTGGATGATGTCTTGTCTAAAGTTGCAGAAGAATTAG
ACTACAAACTCGAAAATGTCCAGGCTAAAATCAACAAACTTGNGATTTCT
CTCATCAGAAATTCTTGGACACTTCAACCAAACCAATTTACattacaaaa
ttcaaaataccATGAAGTTCTGGATGATGTCTTGTCTAAAGTTGCAGAAG
AATTAGACTACAAACTCGAAAATGTTCAGGTTAAAATCAACAAACTTATG
CTGTATCAAGAGAGTGATGATAACGATGATAATGATGATgggtttgtttt
tgaaaataacaacgAGACAGATAAAACATGCTTTGCCACACTTCTGATGC
AACTGCCATCTGTCTTCAAAGGTCATAAAGTTATTGTGTATTCTAAGGGA
AAGCTCCAAAGAATATTGATATCAGtgaatcaaaatatgaaataatttAC
ACAGCTTTCTTCAACAGTTGTCAAAGAAAGATGACATCATTAAAAGAAGG
GTATCGAATTGTTTTGATGTATGATTTGTTATGGATTGGTGATTGTCAAC
CTCCCAATGACCAAATGTTTCAGCAAAGTATCCAGAAGGCCTCCCTTCTT
CTTGAAAAGGTACAGTAGCTTAAATGTTACAGCTTTAAAACACNAATGAT
GATgggtttgtttttgaaaataacaacgAGACAGATAAAACATGCTTTGC
CACACTTCTGATGCAACTGCCATCTGTCTTCAAAGGCCATGAAATTATAG
TGTATTCTGAAGGGAAAGCTCCAAAGAAGATACAATTTGATATCAGggaa
tcaaaatatgaaataatttATACAGCTTTCTTCAACAGTTGTCAAAGAAA
GATGGCATCATTAAAAGAAGGGTATCGAATGGTTTTGGTGTATGATTTGT
TATGGATTGGTGATTGTCCACCTCCCAATGACCAAATATTTCAGCAAAGT
ATTAAGAAGGCCTCCTTTCTTCTTGAAAAGGTACGGAAAATGCCTGACCA
TTTGACCTTTTTCTCACTCGggttttttataagtttgtcGCTACTGATAC
AAAGAAAGTTGTGTGTCCGTTCATTTGCTTtgctaaaaaattgaaacaaa
tcgATTGTAAAGATTTAAGTGCTTGAGTCCTGTTATGGAGGGTGTTTGAG
CTAGAATATGtatttctcaacttcagttgagttagaaNgattttttcact
gttccgcgtcgcacccaagactcgttttttcactgttccgcgtcgcaccc
aagactcgtttgttcactgttccgcgtcgcacccaagactagtttgttca
ctgttccgcgtcgcacccaagactcgtttgttaactgttccgcgtcgcac
ccaagaccgattttttcactgttccgcgtcgcacccaagactgatttttt
cactgttccgcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtt
ttttatttttcaaaaattttgatttttggggcctggggacgagttttcgc
caaaacgaggctaaaactttggggcagcctggagacttcaaagattgttc
gatttggctgaaattttgcacacttgttccttgggtgaatatctgggggt
gtttttttcattttttttNTGTTCCGCGTCatacccaagaccgatttttt
cactgttccgcgtcgcacccaagactgttttattcactgttccgcgtcgc
acccaagactggtTTTTTCACTATTCcgcttcgcacccaagactgatttt
ttcactgttccgcgtcgcacccaagactgatttttttacTGTTCCACGTC
GTActcaagactcgtttgttcactgttccacgtcgcacccaagacttgtt
tgttcactgttccgcgttgcacccaagaccaattttttcactgttccgcg
tcgcacccaagactgattttttcactgttccgcgtcgcacccaagactcg
ttttttcactgttccNaaaacgaggctaaaactttggggcagcctggaga
cttcaaaaattgttcgatttggctgaaattttgcacacttgttccttggg
tgaatatctgggtgtggttttttgcatttttcagaaattttgttttttgg
ggcatggggacgagttttttgccaaaacgaggctaaaactttggagcagc
ctacaggcctccaaattggtcggatttggttgaaatttggcacatttgtt
cattgggtgaatatctgggtgtggttttttgcatttttcagaaatttttt
tttccggtggaaaaatgcctgaaatatgccggaaaaactggttttttggc
attttctcgagattttatcattagttttttctgattttttactcAAAGAT
GCGTGTTAACAATGCcctaaacatggccgagtccgatttttcagaaattt
ttttttccggtggaaaaatgcctgaaatatgccggaaatcgccttTTTTC
GNggtgaatatctgggggtctacaattgggcctatgaataatttgaagcc
actgaagttgagcccagtgcgttgcgcacgttcgactattttgttttttt
cttcattagatTGATGAGGGTATTTTGTGGACGCTTGATGGAAAGTATGA
TAATGTATCACTTTCTGAACAACTTGCTCAAAATTATGGTGAAGATGTTT
TGAATGGCAAAGATCATCAAGTAATTTCTTGTTTGGCAAGAGCTAACGAG
TTACTGAGTACGTAGTATATCAATGTCATGATAGTGTAAAGGTCTTGTTA
GACGATAACATTCGGtaacatttttgtgtaacattttctaaaaatagcaa
atgtTGTACAAAGTGTTACCGTGTAACATCGATTAACATTCAGAAACATT
CAAATGTTAACGAATGNATGTTGTACAAAATGTTACCGTGTAACATCGAT
TAACATTCAGAAACATTCAAATGTTAACGAATGTTACGCGCAGAtagcaa
atcaaaaaaaaatgatttgctCTACATGGTTAACATTTTGAATCAAAGGA
TGCCGCcatttaaagggaatttaaaaggATACTTCAAGTGCGCACGTGTT
TTTTCGccgatttttctctctttttctctcNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNTACGCACAAAATGTTTGCGTGTA
ACATATGTTAACATTTCTTGagcacatttttgaaatcttctatttttaga
aatgttagcaaatgttacacaaaaatgttaCTGTCTAACAAGACCTTAAG
CtcttcttttgaaaattatgcTTCTAGTAATATCATTATGTATCAAgttt
gtttgatttgattttgaaataagctGTGCTTTAAGCAAGAAAAATCTAAT
TGAATCTGAAGCAGGATGATATCGACAAACAAATTTACATCAAATccttt
tttatcaatttcaaattcagtCGATGAGAAGAAGTACGAGTTTCATTTGC
TGGAAATTCAACGAGCTTTGGATGAAGAAGGGAGCTTCCGTGGAGAAGGA
GAAAGCAGAACTTTCAGAGGTTCGTAATCCGAAGGCTTCCACCTTCTCCG
TTTTTTCGTTGTATATTTTCTAAAGTCAAATGCTATATTTTTTACTCGAT
GATTAATATTATTGCATTTCTCCTAGCTATTGGCTTTATCTTCTAATGGT
GTTTATAATCTTCTCCtcttcttttttgtcttttcttttaGTTGTGCTGA
ATTCTAGCTTCGAATCTCTCGCACTAACTAAAAGCTCTCTCATTTCACTC
TAAAGTTAAGACTGGGGTCAGTTAAAAATCGAGCTAGCCTATGTCCTGCT
GTGTCTCATAAAAAGGTTGAAACTTTTGGCAGTTAGAGAGACAGTGCTGT
GTCTCAAAATGGTAGCCAGAGCCTGTAGATAATGATTAATTTCAATATCA
ATCTTTGTTCATAGGAAATATGGATTACACAGAAGATCACATCAAAATCT
TTTCTTCACGTGAATTGTCAACTGGTGaaatgaagtatgatttcaaAAAC
CTTCTCATCCAACCTGAATACCATTTACTTGATTTCGAAGAGAAATTCAA
TGGAAGTTTGAATGAATTTTGGGGACAGTGTGACGATGAGAAAATCAACG
AAGGTGAGCGTGAACACACTGAATCATTTTACGGTGGCATGTATTGGGAT
CCCTATAGATGTGATATGAGAGAACGAAAGCATTATCAAACTTACCGAGA
AAAATACACCAAACGGGtgagaaaatattcaaagtATCTATTGTTTGCTT
TCCCAAAATCTCAAAAAGCTCACATCCTTTCGAAATGTGGAATCAAAGAA
TCATTTAAGTTCCTCGTTGAAGAGTATGAAGCTGGCTCCTCAATGTTCAA
AGAATATTCCAACACCTTTCTAGAGGAAGTTCCCATTGAGGAATTTTTCG
AAAGTTGTGAAACGTTGGAGGAGGTAATTGATGAAAGATTGAATGTTACC
ATGGTTATGCAGTTTCTTTTGAAAGTCGGCGACGTTGAGTTAACAAAATC
TTTTATCGATAAGGTTATGGGAGCTGAAAAATATTCAGGTAAATATTACG
GcatcgaagaagaagaaatgataaaacctttaattaatTTGTTGAAGGCT
TTTCCATGGCAACCCCTTAGTGAGTCGGTTGAGACAGTTATTAGTCATTG
TCCAAAAGAACAGTATGAATTTTGGCTAGATGTGTTTTCATCTACCGGTA
TCACTGAGATTGCACATAAAGTTCTTGCGATCAGTTTGCAGAAAATGATG
GATGATAAAAGATTCCTTCCGTTATGgttgaaaatattcaagcttgtttt
tgaaaacgaagAATTTGGTAATCGTTGGTGGGATAAGATCATCTCCTGTG
AAGATCTTGTCAACAAAGAATTCGATATCATTTCTCATATTTGTTTGAAT
CTACCCATTGAAACAAACCCAGTAAAGTTTCCTTCTCTTTTAACCGCTTT
GGTGACTTCAATGACAACCGAGGACAACCCATATTGTGTTAAGAGGTATG
CGGAAAAGTTACTTGATGTTATCGCCAAAATCAAAGGGAGTGAATTTTTC
GAAAGTGCTCTCACTAATTTAAGTAATCAGCTTGTTTCTGAAGGTCGTAT
CTCAACCTTGATAAAACTAGCAGAACTCTGTGCACCGAAAGATCAACATT
CTCGCCACAATGAAGAAGTTGTTAAACTATTTCTGGAAGGGTGTTTTGAT
TGGTTATCAAAAGCAACTTTCGAAAGGAAACATATACAAAGTGTTGTCGA
TATAGTTGTCCTTTTGAACCAGCACAAACAATTGTATAATGGTCCTATGA
TTGAGAAATACATAGAGTCGTGTCAGAAAATATCCGATCCTGATTTTATT
TGTAATGTTGTCAACAAGTTATTTACCATGTCATGTTCGTTTTACTTTCT
CAAGCCGTTACTTCAATCACTTGCCAATTTGTTAAGCACCAAAACATTCA
CCGATCACAAAGCAATGTCTTCAACTATCAACCACATGTTCATCCAAGGA
CCTGAGTTTGATCATCTATTGACTCTTCTGTTGACTAACGAAAAAATTCT
CTCTTCCATTGATCTTCTCAATGAAATTCTACATTCACTTCTCAGCAAGG
ACGACAACATCGAACAATTGAAAACCAGTATCAATTTCCATGGATTGTTG
ACCAGCTTCGTCTCTCTAATGCAACAACCGAATAACACAAACAAAGAATT
TTCATCTCTCCGTCTGGTTCATGAATTTCTACTCAGCTTAAGCGACGAAT
CTCCTTTACATCAACTGGTTCCTCAAATAATTGACACAAGTTTGCTGAAA
AACGATTTCCCTAAGTGTATACAATATCTATCCAAACTTTCCATCCGTGA
AACTGAGACATTCAAAACCTTCCTCACAACGACAATTCATGCTTTGGGAA
TCTTCCTCCGCCGATATAATACAATCATCGATGCTGAATACCAACTTATT
TATGACTTCATAAAACTATTGCTTAAGAACGACCACTTCACGCCCTTTGC
TTTACAGCTTGCTTCGTTGAAAGACCTTACCAACAACGATTATAGAAACT
TATATCATAACAATAAAGAAAGGTCCGTTCTGGAAAATCTTCTGGCTGCT
TTCAAAAATCACCGCAACACCGATTTCTTTGCCGCCCTCCAGCTCTCTCG
CTCAAGGAGTTTGCAAATCTTGAAAGATTATGGTCCCCCTAAATTCACCT
GGGAGCAACCTGATGCGAATATCGATCACGCCAAAGTTCAGGAGTTTCTC
CGAAGTAAACGCGAAACAATCATATTGCGAACTTTCCGATCCTATAAAAG
CGCTAATAACCGGATCAAAAAGCATAGTGGATATAACAAAGACGGGAAAT
ACAGTTTTACCGCCCAAATTCGTACCGCCAAAAACGGGTGGAAGAGTTTA
GTGGATGTTAAGAAAGGGCGTCACATTCACGAAGATAGAGAGGAAAGATT
TCAGAATCTTATAAATGAATTGGAAGAAAttcttgaaagtttgaaaatat
caaACGTTGAAAATCCATTAGCTGCGTAATTTGAATCAATTTCTTTAGGG
TTATCTTCATATTCATTTAATCTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042346XLOC_042346Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067801-exon-scaffold_476-1491911889:184492..184614TCONS_00067801-exon-scaffold_476-1491911889:184492..184614Clytia hemisphaericaexon
TCONS_00067801-exon-scaffold_476-1510915933:184492..184614TCONS_00067801-exon-scaffold_476-1510915933:184492..184614Clytia hemisphaericaexon
TCONS_00067801-exon-scaffold_476-1575043694:184492..184614TCONS_00067801-exon-scaffold_476-1575043694:184492..184614Clytia hemisphaericaexon
TCONS_00067801-exon-scaffold_476-1491911889:184771..185150TCONS_00067801-exon-scaffold_476-1491911889:184771..185150Clytia hemisphaericaexon
TCONS_00067801-exon-scaffold_476-1510915933:184771..185150TCONS_00067801-exon-scaffold_476-1510915933:184771..185150Clytia hemisphaericaexon
TCONS_00067801-exon-scaffold_476-1575043694:184771..185150TCONS_00067801-exon-scaffold_476-1575043694:184771..185150Clytia hemisphaericaexon
TCONS_00067801-exon-scaffold_476-1491911889:187101..187276TCONS_00067801-exon-scaffold_476-1491911889:187101..187276Clytia hemisphaericaexon
TCONS_00067801-exon-scaffold_476-1510915933:187101..187276TCONS_00067801-exon-scaffold_476-1510915933:187101..187276Clytia hemisphaericaexon
TCONS_00067801-exon-scaffold_476-1575043694:187101..187276TCONS_00067801-exon-scaffold_476-1575043694:187101..187276Clytia hemisphaericaexon
TCONS_00067801-exon-scaffold_476-1491911889:188012..188110TCONS_00067801-exon-scaffold_476-1491911889:188012..188110Clytia hemisphaericaexon
TCONS_00067801-exon-scaffold_476-1510915933:188012..188110TCONS_00067801-exon-scaffold_476-1510915933:188012..188110Clytia hemisphaericaexon
TCONS_00067801-exon-scaffold_476-1575043694:188012..188110TCONS_00067801-exon-scaffold_476-1575043694:188012..188110Clytia hemisphaericaexon
TCONS_00067801-exon-scaffold_476-1491911889:188506..188807TCONS_00067801-exon-scaffold_476-1491911889:188506..188807Clytia hemisphaericaexon
TCONS_00067801-exon-scaffold_476-1510915933:188506..188807TCONS_00067801-exon-scaffold_476-1510915933:188506..188807Clytia hemisphaericaexon
TCONS_00067801-exon-scaffold_476-1575043694:188506..188807TCONS_00067801-exon-scaffold_476-1575043694:188506..188807Clytia hemisphaericaexon
TCONS_00067801-exon-scaffold_476-1491911889:190599..191167TCONS_00067801-exon-scaffold_476-1491911889:190599..191167Clytia hemisphaericaexon
TCONS_00067801-exon-scaffold_476-1510915933:190599..191167TCONS_00067801-exon-scaffold_476-1510915933:190599..191167Clytia hemisphaericaexon
TCONS_00067801-exon-scaffold_476-1575043694:190599..191167TCONS_00067801-exon-scaffold_476-1575043694:190599..191167Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_476supercontigscaffold_476:184492..191167 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.56137	0	0	0	0.13432	0.0263863	0	0	0.120548	0.0633535	0.411667	0	1.11702e-05	0.269041	0	0.165756	0.104414	0	0.0351031	0	0	0	4.36462e-07	0	0.0739395	0	0	0	0	8.54636e-09
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067801 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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